Planaria EST Database

DrC_00914

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00914
         (1228 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q99613|IF38_HUMAN  Eukaryotic translation initiation fact...   181   4e-45
sp|O02328|IF38_CAEEL  Probable eukaryotic translation initia...   172   2e-42
sp|O14164|IF38_SCHPO  Probable eukaryotic translation initia...   119   1e-26
sp|O49160|IF38_ARATH  Eukaryotic translation initiation fact...   104   5e-22
sp|Q9XHM1|IF38_MEDTR  Eukaryotic translation initiation fact...    98   6e-20
sp|P32497|IF38_YEAST  Eukaryotic translation initiation fact...    93   2e-18
sp|P53339|YG61_YEAST  Hypothetical 16.8 kDa protein in AGT1-...    32   3.7  
sp|Q49V33|Y2232_STAS1  Hypothetical ATP:guanido phosphotrans...    31   6.4  
sp|O13799|YE02_SCHPO  Putative helicase C17H9.02                   31   8.3  

>sp|Q99613|IF38_HUMAN Eukaryotic translation initiation factor 3 subunit 8 (eIF3 p110)
            (eIF3c)
          Length = 913

 Score =  181 bits (459), Expect = 4e-45
 Identities = 110/293 (37%), Positives = 166/293 (56%), Gaps = 20/293 (6%)
 Frame = +3

Query: 6    SQVDILQQLIELVISRGFGIGLQVKIMVSLVSLLLQYKCSASNPCMTLENWKKILDCTFN 185
            +Q+++LQ L+++      G G+ VKI  ++++ L  Y  + +   M  E W K LDC   
Sbjct: 349  AQIELLQLLVQIAAENNLGEGVIVKIKFNIIASLYDYNPNLAT-YMKPEMWGKCLDCINE 407

Query: 186  IMDILNKNLTDISMRISDIDENERLDTA--PYFVSGCIVGFLEHLEDEYTKILTYHDFSS 359
            +MDIL  N  +I +  + ++E+E L  A  P  V GCI+  +E +++E+TKI+   D  S
Sbjct: 408  LMDILFAN-PNIFVGENILEESENLHNADQPLRVRGCILTLVERMDEEFTKIMQNTDPHS 466

Query: 360  DKEVEYRDKLHYETKMMSLCSVVSDYLNKKNYGDDEKCRVYMRQLEHIYYRFDPTVDIKE 539
             + VE+   L  E ++ ++   V  YL +K    +E CR+Y+ ++ H YY+FD     ++
Sbjct: 467  QEYVEH---LKDEAQVCAIIERVQRYLEEKGT-TEEVCRIYLLRILHTYYKFDYKAHQRQ 522

Query: 540  EIP------------------SYKEMRRLSGYITSRDETDRLRTRAILCHIYYLALHDYW 665
              P                  S   M RL  YI ++D TDR+RT AILCHIY+ ALH  W
Sbjct: 523  LTPPEGSSKSEQDQAENEGEDSAVLMERLCKYIYAKDRTDRIRTCAILCHIYHHALHSRW 582

Query: 666  FEARDMMAMSALTNLIDRADASTQILFNRVTVQLGLCAFRRGCIKEAHQALAE 824
            ++ARD+M MS L + I  AD   QIL+NR  VQLG+CAFR+G  K+AH AL +
Sbjct: 583  YQARDLMLMSHLQDNIQHADPPVQILYNRTMVQLGICAFRQGLTKDAHNALLD 635


 Score = 97.4 bits (241), Expect = 7e-20
 Identities = 49/110 (44%), Positives = 73/110 (66%), Gaps = 1/110 (0%)
 Frame = +1

Query: 823  NLQGSGRVKEILAQGTRLNR-NEATAEELYREKMFLQPYHKHINVDVIECAYLVSAMLTD 999
            ++Q SGR KE+L QG  L    E   E+   E+    P+H HIN++++EC YLVSAML +
Sbjct: 635  DIQSSGRAKELLGQGLLLRSLQERNQEQEKVERRRQVPFHLHINLELLECVYLVSAMLLE 694

Query: 1000 VNHCHMQQADGRRVMISRNFHYVLKNNDRTTLNGRPDNLKEHVVAASKAL 1149
            + +    ++D RR MIS+ FH+ L+  +R  L G P++++EHVVAASKA+
Sbjct: 695  IPYMAAHESDARRRMISKQFHHQLRVGERQPLLGPPESMREHVVAASKAM 744

>sp|O02328|IF38_CAEEL Probable eukaryotic translation initiation factor 3 subunit 8 (eIF3
            p110) (eIF3c)
          Length = 898

 Score =  172 bits (435), Expect = 2e-42
 Identities = 100/281 (35%), Positives = 158/281 (56%), Gaps = 5/281 (1%)
 Frame = +3

Query: 21   LQQLIELVISRGFGIGLQVKIMVSLVSLLLQYKCSASNPCMTLENWKKILDCTFNIMDIL 200
            L++L+E+   +  G+G+ VKI   ++S L +     S+  M  E +   L    +++D+L
Sbjct: 329  LRKLLEVSEEKELGLGINVKISFCIISALFELNAKISDH-MEYETFMTTLQTVNSLLDLL 387

Query: 201  -NKNLTDISMRISDIDENERLDTAPYFVSGCIVGFLEHLEDEYTKILTYHDFSSDKEVEY 377
               +   +S+  ++ DEN + DT  Y + G I+  ++ L+ E  KIL   D  S+   +Y
Sbjct: 388  IGTDRVKLSVTYAEEDENLKDDTQEYRIQGSILIAVQRLDGELAKILQNADCHSN---DY 444

Query: 378  RDKLHYETKMMSLCSVVSDYLNKKN----YGDDEKCRVYMRQLEHIYYRFDPTVDIKEEI 545
             +KL  E  M SL      Y+  +N    +   E C+VYM ++EH YY++      + E 
Sbjct: 445  IEKLKAEKDMCSLIEKAEKYVELRNDSGIFDKHEVCKVYMMRIEHAYYKYQD----QNEE 500

Query: 546  PSYKEMRRLSGYITSRDETDRLRTRAILCHIYYLALHDYWFEARDMMAMSALTNLIDRAD 725
             + K M  L   I + D+  RLR RA+LCH+YYLA+HD W  ARD++ MS +  ++D +D
Sbjct: 501  DAGKLMDYLCNKIYTLDDEKRLRQRAMLCHVYYLAVHDKWHRARDLLLMSHMQAIVDHSD 560

Query: 726  ASTQILFNRVTVQLGLCAFRRGCIKEAHQALAEFARVRQSE 848
              TQIL+NR   QLGLCAFR G I+EAHQ L+E    ++++
Sbjct: 561  VDTQILYNRTICQLGLCAFRHGFIREAHQGLSEIQNTQRAK 601


 Score =  105 bits (263), Expect = 2e-22
 Identities = 50/116 (43%), Positives = 77/116 (66%)
 Frame = +1

Query: 826  LQGSGRVKEILAQGTRLNRNEATAEELYREKMFLQPYHKHINVDVIECAYLVSAMLTDVN 1005
            +Q + R KE+LAQ     ++E TAE+   ++    PYH HINV+++EC YL+ +ML ++ 
Sbjct: 594  IQNTQRAKELLAQAVGTRQHEKTAEQEKIDRSRQVPYHMHINVELMECVYLICSMLLEIP 653

Query: 1006 HCHMQQADGRRVMISRNFHYVLKNNDRTTLNGRPDNLKEHVVAASKALFNW*LENC 1173
            H    + + RR M+SR+FHY LK +++ +L G P+N +EHVVAASKA+ N   + C
Sbjct: 654  HMASCEFEMRRRMLSRSFHYQLKQSEKASLTGPPENTREHVVAASKAMLNGDWKKC 709

>sp|O14164|IF38_SCHPO Probable eukaryotic translation initiation factor 3 93 kDa subunit
            (eIF3 p93)
          Length = 918

 Score =  119 bits (299), Expect = 1e-26
 Identities = 87/281 (30%), Positives = 139/281 (49%), Gaps = 28/281 (9%)
 Frame = +3

Query: 72   QVKIMVSLVSLLLQYKCSASNPCMTLENWKKILDCTFNIMDILNKNLTDISMRISDIDEN 251
            ++++ V+L+++      + S   M ++ W   L    +I+DI + N   + +   + DEN
Sbjct: 371  RLRVKVALLAVRFDIN-TGSGQYMPIDQWNAALTELHSILDIFDANPKIVIVEQVE-DEN 428

Query: 252  ERLDTA---------PYFVSGCIVGFLEHLEDEYTKILTYHDFSSDKEVEYRDKLHYETK 404
            E  + A            V G +V FLE L+DE+T+ L   D  +    EY D+L  ET 
Sbjct: 429  EEEEEAIAAAENNNGVIQVQGSVVSFLERLDDEFTRSLQMIDPHTP---EYIDRLKDETS 485

Query: 405  MMSLCSVVSDYLNKKNYGDDEKCRVYMRQLEHIYYRFDPTVDIKEEIPSYKEMRRLSGYI 584
            + +L      YL +    ++   R+ MR+L+ +YY+ +  +   EE+            I
Sbjct: 486  LYTLLVRSQGYLERIGVVENT-ARLIMRRLDRVYYKPEQVIRANEEVAWRSFPPTFDLTI 544

Query: 585  TSRDETDR-------------------LRTRAILCHIYYLALHDYWFEARDMMAMSALTN 707
            T R  T                     LRTRA+LCHIY+ AL + +++ARDM+ MS L +
Sbjct: 545  TPRATTTTPDILIHSLCVYLYNNGVSLLRTRAMLCHIYHEALQNRFYKARDMLLMSHLQD 604

Query: 708  LIDRADASTQILFNRVTVQLGLCAFRRGCIKEAHQALAEFA 830
             +  AD +TQIL NR  VQ+GLCAFR G ++E   AL + +
Sbjct: 605  SVHAADIATQILHNRTMVQIGLCAFRNGMVQETQYALQDIS 645


 Score = 75.5 bits (184), Expect = 3e-13
 Identities = 40/114 (35%), Positives = 69/114 (60%), Gaps = 4/114 (3%)
 Frame = +1

Query: 820  QNLQGSGRVKEILAQGTRLNR-NEATAEELYREKMFLQPYHKHINVDVIECAYLVSAMLT 996
            Q++  +GRVKE+L QG +  +  + T ++   +K  + P+H HIN++++EC YL  +ML 
Sbjct: 642  QDISTTGRVKELLGQGIQAPKFGQFTPDQDRLDKQLVLPFHMHINLELLECVYLTCSMLM 701

Query: 997  DV---NHCHMQQADGRRVMISRNFHYVLKNNDRTTLNGRPDNLKEHVVAASKAL 1149
            ++          +D R+ +ISR F  +L+  DR    G P+N +E+++ ASKAL
Sbjct: 702  EIPAMAAASSTASDSRKRVISRPFRRMLEYIDRQLFVGPPENTREYIMQASKAL 755

>sp|O49160|IF38_ARATH Eukaryotic translation initiation factor 3 subunit 8 (eIF3 p110)
            (eIF3c) (p105)
          Length = 900

 Score =  104 bits (260), Expect = 5e-22
 Identities = 94/302 (31%), Positives = 137/302 (45%), Gaps = 45/302 (14%)
 Frame = +3

Query: 72   QVKIMVSLVSLLLQYKCSASNPCMTLENWKKILDCTFNIMDILNKNLTDISMRISDIDEN 251
            +++I+ S++S         S   M +  WKK +     I+DIL K    +     + DEN
Sbjct: 280  KLEILFSVISAQFDVNPGLSGH-MPINVWKKCVLNMLTILDILVKYSNIVVDDTVEPDEN 338

Query: 252  ERLDTAPYF----VSGCIVGFLEHLEDEYTKILTYHDFSSDKEVEYRDKLHYETKMMSLC 419
            E      Y     V G +V FLE ++ E+ K L   D  +    EY ++L  E   ++L 
Sbjct: 339  ETSKPTDYDGKIRVWGNLVAFLERVDTEFFKSLQCIDPHTR---EYVERLRDEPMFLALA 395

Query: 420  SVVSDYLNKKNYGDDEKC-RVYMRQLEHIYYRFDPTVD-------IKEEIPSYKEMRRLS 575
              + DY  +   GD +   +V +R++E IYY+     D       + EE    +E +  S
Sbjct: 396  QNIQDYFERM--GDFKAAAKVALRRVEAIYYKPQEVYDAMRKLAELVEEEEETEEAKEES 453

Query: 576  GYITS------------------------------RDETDRLRTRAILCHIYYLALHDYW 665
            G  TS                              R+  +R + RA+LC I + AL D +
Sbjct: 454  GPPTSFIVVPEVVPRKPTFPESSRAMMDILVSLIYRNGDERTKARAMLCDINHHALMDNF 513

Query: 666  FEARDMMAMSALTNLIDRADASTQILFNRVTVQLGLCAFRRGCIKEAHQALAEF---ARV 836
              ARD++ MS L + I   D STQILFNR   QLGLCAFR G I E+H  L+E     RV
Sbjct: 514  VTARDLLLMSHLQDNIQHMDISTQILFNRTMAQLGLCAFRAGMITESHSCLSELYSGQRV 573

Query: 837  RQ 842
            R+
Sbjct: 574  RE 575


 Score = 80.9 bits (198), Expect = 7e-15
 Identities = 40/109 (36%), Positives = 69/109 (63%), Gaps = 1/109 (0%)
 Frame = +1

Query: 826  LQGSGRVKEILAQGTRLNR-NEATAEELYREKMFLQPYHKHINVDVIECAYLVSAMLTDV 1002
            L    RV+E+LAQG   +R +E T E+   E+    PYH H+N++++E  +L+ AML +V
Sbjct: 567  LYSGQRVRELLAQGVSQSRYHEKTPEQERMERRRQMPYHMHLNLELLEAVHLICAMLLEV 626

Query: 1003 NHCHMQQADGRRVMISRNFHYVLKNNDRTTLNGRPDNLKEHVVAASKAL 1149
             +      D +R +IS+NF  +L+ ++R      P+N+++HV+AA++AL
Sbjct: 627  PNMAANSHDAKRRVISKNFRRLLEISERQAFTAPPENVRDHVMAATRAL 675

>sp|Q9XHM1|IF38_MEDTR Eukaryotic translation initiation factor 3 subunit 8 (eIF3 p110)
            (eIF3c)
          Length = 935

 Score = 97.8 bits (242), Expect = 6e-20
 Identities = 90/301 (29%), Positives = 141/301 (46%), Gaps = 50/301 (16%)
 Frame = +3

Query: 72   QVKIMVSLVSLLLQYKCSASNPCMTLENWKKILDCTFNIMDILNKNLTDISMRISD---I 242
            +++I+ S+VS         S   M +  WKK   C  N++ IL+  +   ++++ D   +
Sbjct: 295  KLQILFSVVSAQFDVNPGLSGH-MPISVWKK---CVQNMLVILDILVQHPNIKVDDSVEL 350

Query: 243  DENERLD----TAPYFVSGCIVGFLEHLEDEYTKILTYHDFSSDKEVEYRDKLHYETKMM 410
            DENE         P  V G +V FLE ++ E+ K L   D  +    EY ++L  E + +
Sbjct: 351  DENETKKGDDYNGPINVWGNLVAFLEKIDAEFFKSLQCIDPHTR---EYVERLRDEPQFV 407

Query: 411  SLCSVVSDYLNKKNYGDDE-KCRVYMRQLEHIYYR------------------------- 512
             L   V +YL  ++ GD +   +V ++++E IYY+                         
Sbjct: 408  VLAQNVQEYL--ESIGDFKASSKVALKRVELIYYKPHEVYEATRKLAEMTVEGDNGEMSE 465

Query: 513  -------------FDPTVDIKEEIPSYKE-MRRLSGYITS---RDETDRLRTRAILCHIY 641
                         F  T+++    P++ E  R L   + S   +   +R + RA+LC IY
Sbjct: 466  EPKGFEDTRIPAPFVVTLELVARKPTFPENSRTLMDVLVSLIYKYGDERTKARAMLCDIY 525

Query: 642  YLALHDYWFEARDMMAMSALTNLIDRADASTQILFNRVTVQLGLCAFRRGCIKEAHQALA 821
            + AL D +  ARD++ MS L   +   D STQILFNR   QLGLCAFR G + EAH  L+
Sbjct: 526  HHALLDEFAVARDLLLMSHLQENVHHMDISTQILFNRAMSQLGLCAFRAGLVSEAHGCLS 585

Query: 822  E 824
            E
Sbjct: 586  E 586


 Score = 87.0 bits (214), Expect = 1e-16
 Identities = 44/111 (39%), Positives = 71/111 (63%), Gaps = 1/111 (0%)
 Frame = +1

Query: 826  LQGSGRVKEILAQGTRLNR-NEATAEELYREKMFLQPYHKHINVDVIECAYLVSAMLTDV 1002
            L   GRVKE+LAQG   +R +E T E+   E+    PYH HIN++++E  +L SAML +V
Sbjct: 587  LYSGGRVKELLAQGVSQSRYHEKTPEQERLERRRQMPYHMHINLELLESVHLTSAMLLEV 646

Query: 1003 NHCHMQQADGRRVMISRNFHYVLKNNDRTTLNGRPDNLKEHVVAASKALFN 1155
             +      D +R +IS+NF  +L+ +++ T  G P+ +++HV+AA++ L N
Sbjct: 647  PNMAANVHDAKRKIISKNFRRLLEVSEKQTFTGPPETVRDHVMAATRVLIN 697

>sp|P32497|IF38_YEAST Eukaryotic translation initiation factor 3 93 kDa subunit (eIF3 p93)
            (Nuclear transport protein NIP1)
          Length = 812

 Score = 92.8 bits (229), Expect = 2e-18
 Identities = 74/275 (26%), Positives = 127/275 (46%), Gaps = 29/275 (10%)
 Frame = +3

Query: 81   IMVSLVSLLLQYKCSASNPCMTLENWKKILDCTFNIMDILNKNLTDISMR-----ISDID 245
            IM  L  +  ++  SA+     ++ WK   +    ++ IL++ +    +      I  I+
Sbjct: 293  IMAYLTLIPSRFDASANLSYQPIDQWKSSFNDISKLLSILDQTIDTYQVNEFADPIDFIE 352

Query: 246  ENERLDT-APYFVSGCIVGFLEHLEDEYTK-ILTYHDFSSDKEVEYRDKLHYETKMMSLC 419
            +  + D+     + G I  F+E L+DE+ K +L     SSD  +  RD+      ++   
Sbjct: 353  DEPKEDSDGVKRILGSIFSFVERLDDEFMKSLLNIDPHSSDYLIRLRDEQSIYNLILRTQ 412

Query: 420  SVVSDYLNKKNYGDDEKCRVYMRQLEHIYYRFDPTVDIKEEIPSYKEMRRLSGYITSRDE 599
                  L  ++  +    R ++++L+HIYY+ +  + I E         +     TS+D+
Sbjct: 413  LYFEATLKDEHDLERALTRPFVKRLDHIYYKSENLIKIMETAAWNIIPAQFKSKFTSKDQ 472

Query: 600  TDR----------------------LRTRAILCHIYYLALHDYWFEARDMMAMSALTNLI 713
             D                       ++ RAIL +IYY AL+  +  A+DM+  S +   I
Sbjct: 473  LDSADYVDNLIDGLSTILSKQNNIAVQKRAILYNIYYTALNKDFQTAKDMLLTSQVQTNI 532

Query: 714  DRADASTQILFNRVTVQLGLCAFRRGCIKEAHQAL 818
            ++ D+S QILFNRV VQLGL AF+   I+E HQ L
Sbjct: 533  NQFDSSLQILFNRVVVQLGLSAFKLCLIEECHQIL 567


 Score = 49.3 bits (116), Expect = 2e-05
 Identities = 35/127 (27%), Positives = 71/127 (55%), Gaps = 11/127 (8%)
 Frame = +1

Query: 811  KLWQNLQGSGRVKEILAQGTRLNR------NEATAEELYREKMFLQPYHKHINVDVIECA 972
            ++  +L  S  ++EIL Q + L+R      N A+A+E  R+ +   PYH+HIN+D+I+  
Sbjct: 565  QILNDLLSSSHLREILGQQS-LHRISLNSSNNASADERARQCL---PYHQHINLDLIDVV 620

Query: 973  YLVSAMLTDVNH--CHMQQADGRRVMIS-RNFHYVLKNNDRTTLNGRPDNLKEHVVAASK 1143
            +L  ++L ++            +R+  S ++    L++ D+ +  G P+ L+++V+ A+K
Sbjct: 621  FLTCSLLIEIPRMTAFYSGIKVKRIPYSPKSIRRSLEHYDKLSFQGPPETLRDYVLFAAK 680

Query: 1144 AL--FNW 1158
            ++   NW
Sbjct: 681  SMQKGNW 687

>sp|P53339|YG61_YEAST Hypothetical 16.8 kDa protein in AGT1-MAL1S intergenic region
           precursor
          Length = 147

 Score = 32.0 bits (71), Expect = 3.7
 Identities = 33/126 (26%), Positives = 54/126 (42%), Gaps = 2/126 (1%)
 Frame = -1

Query: 430 LTTLHNDIIFVS*CNLSRYSTSLSEEKSWYVKIFVYSSSKCSKKPTMQPLTKYGAVSNLS 251
           L +  + + F+S   L  +S S SE  +W  ++ V S    SK  +  P +K   +    
Sbjct: 24  LASFASSVAFIS---LITFSLSSSESPNW-AELVVNSKWSSSKALSFFPSSKSSVLKTSC 79

Query: 250 FSSISLIRIEMSVRFLFNMSIILNVQSKIFFQFSSVMHGFDALHLYCNSSD--TNETIIF 77
           + +ISL   EM +   F  +  L     IFF    + + F  L  +  +S+  TN  I+ 
Sbjct: 80  WFTISLEDSEMFLSSFFEAAFFLLTNEMIFF---ILYYFFSCLMFFYVASERNTNPKILQ 136

Query: 76  TCKPIP 59
           T    P
Sbjct: 137 TINTKP 142

>sp|Q49V33|Y2232_STAS1 Hypothetical ATP:guanido phosphotransferase SSP2232
          Length = 336

 Score = 31.2 bits (69), Expect = 6.4
 Identities = 26/119 (21%), Positives = 58/119 (48%), Gaps = 3/119 (2%)
 Frame = +1

Query: 781  SEEDVLKKPTKLWQNLQGSGRVKEILAQGTRLNRNE--ATAEELYREKMFLQPYHKHINV 954
            +EED+++  +++ Q +     + E +    RLNR+    T + +YR    L+ Y + I++
Sbjct: 223  TEEDIIESLSEVVQQI-----INEEMQIRERLNRHNYTETLDRVYRSLGILK-YSRLISM 276

Query: 955  DVIECAYLVSAMLTDVNHCHMQQADGRRVMISRNFHYVLKNNDRTTLNG-RPDNLKEHV 1128
            +          +  D+ +  ++      +M++    ++L + D  T+N  R D L+EH+
Sbjct: 277  EEASLRLSEVKLGIDLEYIELEDFKFNELMVAIQSPFLLDDEDDRTVNEKRADILREHI 335

>sp|O13799|YE02_SCHPO Putative helicase C17H9.02
          Length = 1030

 Score = 30.8 bits (68), Expect = 8.3
 Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 5/62 (8%)
 Frame = +1

Query: 778 LSEEDVLKKPTKLWQNLQGSGRVKEILAQ----GTRLN-RNEATAEELYREKMFLQPYHK 942
           +S ED+LKK    +QN++    +KE L Q     T +N  NE   +E +  K+ L+ Y +
Sbjct: 563 ISPEDILKKSFYQFQNMESLPLIKEELMQLKNEETSINIPNETAVKEFHDLKLQLEKYGE 622

Query: 943 HI 948
            I
Sbjct: 623 EI 624

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 140,448,249
Number of Sequences: 369166
Number of extensions: 2907302
Number of successful extensions: 7975
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 7555
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7960
length of database: 68,354,980
effective HSP length: 113
effective length of database: 47,479,925
effective search space used: 14006577875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00914

  1. Dr_sW_023_A09
  2. Dr_sW_001_I14