Planaria EST Database

DrC_00911

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00911
         (736 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P36022|DYHC_YEAST  Dynein heavy chain, cytosolic (DYHC)         37   0.071
sp|Q899S2|TRME_CLOTE  tRNA modification GTPase trmE                36   0.12 
sp|Q91VW5|GOGA4_MOUSE  Golgin subfamily A member 4 (tGolgin-1)     33   0.60 
sp|Q24143|HR96_DROME  Nuclear hormone receptor HR96 (dHR96)        32   1.3  
sp|Q94HW3|DRL11_ARATH  Probable disease resistance protein R...    32   1.3  
sp|Q92764|K1H5_HUMAN  Keratin, type I cuticular Ha5 (Hair ke...    32   1.3  
sp|Q9CFV2|CARB_LACLA  Carbamoyl-phosphate synthase large cha...    32   1.8  
sp|Q40392|TMVRN_NICGU  TMV resistance protein N                    31   3.0  
sp|O25597|Y943_HELPY  Hypothetical oxidoreductase HP0943           31   3.0  
sp|O13284|CPSKS_PHASA  Ent-kaurene synthase (Ent-copalyl dip...    30   5.1  

>sp|P36022|DYHC_YEAST Dynein heavy chain, cytosolic (DYHC)
          Length = 4092

 Score = 36.6 bits (83), Expect = 0.071
 Identities = 23/59 (38%), Positives = 34/59 (57%)
 Frame = +1

Query: 202  LPEALKFVNEGLEESAEEMITTCDLSAELRIKSAEILFELELLEDARSVLDTILIEDEE 378
            L E  +FVN GLE+  E ++   +L+  L  KS E+    E  ++ARS LD +L+E  E
Sbjct: 3010 LQENQRFVNVGLEKLNESVLKVNELNKTLSKKSTEL---TEKEKEARSTLDKMLMEQNE 3065

>sp|Q899S2|TRME_CLOTE tRNA modification GTPase trmE
          Length = 459

 Score = 35.8 bits (81), Expect = 0.12
 Identities = 43/170 (25%), Positives = 79/170 (46%), Gaps = 20/170 (11%)
 Frame = +1

Query: 121 QSLASLNLIKNESELA-KENIKKSIGFWLPEALKFVNEGLEESAEEMITTCDL------- 276
           Q+ A +++I++++EL+ K  + +SIG  + E +  + E L E+   +  T D        
Sbjct: 132 QAEAVIDIIRSKTELSMKSAVSQSIGK-VSEEINVLRENLIETIAHIEATVDYPEEDLEE 190

Query: 277 --SAELRIKSAEILFELELLEDA-------RSVLDTILIEDEEHFQAHYLMALIIESILD 429
             S++++ K  +I+ ELE L D        R  LD +++      ++  L AL+ E    
Sbjct: 191 ITSSQVQEKIEKIIEELERLLDTSEEGKIIREGLDVVIVGKPNVGKSSLLNALLSEK--- 247

Query: 430 KSGEENKEELLGLIEDHAEMAIALAN---PVVESEAVAKMTRLLEKIGVE 570
                   E+ G   D  E  I L      ++++  + +   L+EKIGVE
Sbjct: 248 ---RAIVTEIPGTTRDVIEEYINLDGIPIKIIDTAGIRETEDLVEKIGVE 294

>sp|Q91VW5|GOGA4_MOUSE Golgin subfamily A member 4 (tGolgin-1)
          Length = 2238

 Score = 33.5 bits (75), Expect = 0.60
 Identities = 39/178 (21%), Positives = 78/178 (43%)
 Frame = +1

Query: 7    SLCELYMTDLCDEETAELKCNEFIKNAIEYDETNPAAWQSLASLNLIKNESELAKENIKK 186
            SL + ++ D+ +E+T E    +  K  +E +  +    ++L + + +  E  + + +  K
Sbjct: 682  SLFQAHIQDM-NEKTLE----KLDKKQMELESVSSELSEALRARDQLAEELSVLRGDADK 736

Query: 187  SIGFWLPEALKFVNEGLEESAEEMITTCDLSAELRIKSAEILFELELLEDARSVLDTILI 366
                 + +AL+   E      +  + +     EL ++ AE     + L+D  S L  +L 
Sbjct: 737  -----MKQALEAELEEQRRHHQREVGSISEQQELTVRRAE-----KALKDELSRLGALLD 786

Query: 367  EDEEHFQAHYLMALIIESILDKSGEENKEELLGLIEDHAEMAIALANPVVESEAVAKM 540
            E +EH +        +E+ L KS  E ++ L  L   H+E + A        E +A+M
Sbjct: 787  ERDEHLRERQARVQDLEAHLQKSAGELQQALAKLDLLHSEQSAAREQAGAYEEQLAQM 844

>sp|Q24143|HR96_DROME Nuclear hormone receptor HR96 (dHR96)
          Length = 723

 Score = 32.3 bits (72), Expect = 1.3
 Identities = 38/156 (24%), Positives = 67/156 (42%), Gaps = 8/156 (5%)
 Frame = +1

Query: 31  DLCDEETAELK---CNEFI--KNAIEYDETNPAAWQSLASLNLIKNESELAKENIKKSIG 195
           D+C E+   L    C E +  ++ + YD+   AAW+                 + K+++G
Sbjct: 552 DMCQEDQVALLKGGCTEMMIMRSVMIYDDDR-AAWKV---------------PHTKENMG 595

Query: 196 FWLPEALKFVNEGLEESAEEMITTCDLSAELRIKSAEILFELELLEDARSVL---DTILI 366
               + LKF    + E  ++ ITT D    +      I+  + L   ARS +   D I +
Sbjct: 596 NIRTDLLKFAEGNIYEEHQKFITTFDEKWRMDENIILIMCAIVLFTSARSRVIHKDVIRL 655

Query: 367 EDEEHFQAHYLMALIIESILDKSGEENKEELLGLIE 474
           E   ++   YL+   +ES+   SG E +   + LI+
Sbjct: 656 EQNSYY---YLLRRYLESVY--SGCEARNAFIKLIQ 686

>sp|Q94HW3|DRL11_ARATH Probable disease resistance protein RDL6/RF9
          Length = 1049

 Score = 32.3 bits (72), Expect = 1.3
 Identities = 24/83 (28%), Positives = 38/83 (45%)
 Frame = +1

Query: 145 IKNESELAKENIKKSIGFWLPEALKFVNEGLEESAEEMITTCDLSAELRIKSAEILFELE 324
           I+   E + E +  SIG      LK++         E +T  DL +E+R K A I+F+  
Sbjct: 710 IELRKETSLETLAASIG-----GLKYL---------ESLTITDLGSEMRTKEAGIVFDFV 755

Query: 325 LLEDARSVLDTILIEDEEHFQAH 393
            L+     L    +  E+HF +H
Sbjct: 756 YLKTLTLKLYMPRLSKEQHFPSH 778

>sp|Q92764|K1H5_HUMAN Keratin, type I cuticular Ha5 (Hair keratin, type I Ha5)
          Length = 425

 Score = 32.3 bits (72), Expect = 1.3
 Identities = 26/117 (22%), Positives = 50/117 (42%)
 Frame = +1

Query: 40  DEETAELKCNEFIKNAIEYDETNPAAWQSLASLNLIKNESELAKENIKKSIGFWLPEALK 219
           +EE   L+C    +  +E D   P     +  L  ++ + E   EN ++    WL    +
Sbjct: 206 EEEVNSLRCQLGDRLNVEVDAAPPVDLNRV--LEEMRCQYETLVENNRRDAEDWLDTQSE 263

Query: 220 FVNEGLEESAEEMITTCDLSAELRIKSAEILFELELLEDARSVLDTILIEDEEHFQA 390
            +N+ +  S+E++ +      ELR     +  EL+     R  L++ L E E  + +
Sbjct: 264 ELNQQVVSSSEQLQSCQAEIIELRRTVNALEIELQAQHSMRDALESTLAETEARYSS 320

>sp|Q9CFV2|CARB_LACLA Carbamoyl-phosphate synthase large chain (Carbamoyl-phosphate
            synthetase ammonia chain)
          Length = 1064

 Score = 32.0 bits (71), Expect = 1.8
 Identities = 33/142 (23%), Positives = 64/142 (45%), Gaps = 8/142 (5%)
 Frame = +1

Query: 100  ETNPAAWQSLASLNLIKN--ESELAKENIK----KSIGFWLPEALKFVNEGLEESAEEMI 261
            E NP A +++  L+ + N   ++LA + I     K +G+          EGL E+ + + 
Sbjct: 832  EVNPRASRTVPFLSKVTNIPMAQLATQMILGKNLKDLGY---------TEGLAETPDMVH 882

Query: 262  TTCDLSAELRIKSAEILFELELLEDARSVLDTILIEDE--EHFQAHYLMALIIESILDKS 435
                + +  ++   + L   E+     ++   + +E    + F+A  L      S+L   
Sbjct: 883  VKAPVFSFTKLAKVDSLLGPEMKSTGEAMGSDVTLEKALYKSFEAAKLHMADYGSVLFTV 942

Query: 436  GEENKEELLGLIEDHAEMAIAL 501
             +E+KEE L L +D AE+  +L
Sbjct: 943  ADEDKEETLALAKDFAEIGYSL 964

>sp|Q40392|TMVRN_NICGU TMV resistance protein N
          Length = 1144

 Score = 31.2 bits (69), Expect = 3.0
 Identities = 34/132 (25%), Positives = 60/132 (45%), Gaps = 2/132 (1%)
 Frame = +1

Query: 88  IEYDETNPAAWQSLASL--NLIKNESELAKENIKKSIGFWLPEALKFVNEGLEESAEEMI 261
           + Y +  P A +   SL  NL   E + A E++K +    + + LK   +GLE   +EM 
Sbjct: 379 VNYAKGLPLALKVWGSLLHNLRLTEWKSAIEHMKNNSYSGIIDKLKISYDGLEPKQQEMF 438

Query: 262 TTCDLSAELRIKSAEILFELELLEDARSVLDTILIEDEEHFQAHYLMALIIESILDKSGE 441
              D++  LR +  + +  L++LE               H  A Y + ++I+  L    E
Sbjct: 439 --LDIACFLRGEEKDYI--LQILESC-------------HIGAEYGLRILIDKSLVFISE 481

Query: 442 ENKEELLGLIED 477
            N+ ++  LI+D
Sbjct: 482 YNQVQMHDLIQD 493

>sp|O25597|Y943_HELPY Hypothetical oxidoreductase HP0943
          Length = 410

 Score = 31.2 bits (69), Expect = 3.0
 Identities = 20/75 (26%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
 Frame = +1

Query: 160 ELAKENIKKSIGFWLPEALKFVNEGLEESAEEMITTCDLSAELRIKSAEILFE-LELLED 336
           ++  + +K  + FW  E    +   LEES E+ + TCD S   +I SA+   E + ++ D
Sbjct: 118 DMYHQMLKDGMDFWYKEDGLLMIYTLEESFEKKLKTCDNSGAYKILSAKETKEYMPVVND 177

Query: 337 ARSVLDTILIEDEEH 381
             ++  ++L+ +  H
Sbjct: 178 --NICGSVLLTENAH 190

>sp|O13284|CPSKS_PHASA Ent-kaurene synthase (Ent-copalyl diphosphate synthase) (CPS/KS)
            (FCPS/KS)
          Length = 946

 Score = 30.4 bits (67), Expect = 5.1
 Identities = 31/138 (22%), Positives = 58/138 (42%), Gaps = 3/138 (2%)
 Frame = +1

Query: 100  ETNPAAWQSLASLNLIKNE--SELAKENIKKSIGFWLPEAL-KFVNEGLEESAEEMITTC 270
            E  PA  Q +  L+ + ++   E+  E + K +G  + + + K V+E ++    E I  C
Sbjct: 662  EAAPAFAQCIGQLHQVVDKVVDEVIDEVVDKVVGKVVGKVVGKVVDERVDSPTHEAIAIC 721

Query: 271  DLSAELRIKSAEILFELELLEDARSVLDTILIEDEEHFQAHYLMALIIESILDKSGEENK 450
            ++ A LR     +L    +L  ++   D +  E      AH ++ +   S L   G    
Sbjct: 722  NIEASLRRFVDHVLHHQHVLHASQQEQDILWRELRAFLHAH-VVQMADNSTLAPPGRTFF 780

Query: 451  EELLGLIEDHAEMAIALA 504
            + +     DH   A + A
Sbjct: 781  DWVRTTAADHVACAYSFA 798

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,156,778
Number of Sequences: 369166
Number of extensions: 1287664
Number of successful extensions: 3999
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3899
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3997
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6582889600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00911

  1. Dr_sW_011_A09
  2. Dr_sW_022_N12