Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_022_N12
(730 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P36022|DYHC_YEAST Dynein heavy chain, cytosolic (DYHC) 37 0.070
sp|Q91VW5|GOGA4_MOUSE Golgin subfamily A member 4 (tGolgin-1) 34 0.45
sp|Q24143|HR96_DROME Nuclear hormone receptor HR96 (dHR96) 32 1.3
sp|Q94HW3|DRL11_ARATH Probable disease resistance protein R... 32 1.3
sp|Q92764|K1H5_HUMAN Keratin, type I cuticular Ha5 (Hair ke... 32 1.3
sp|Q8DC90|YF51_VIBVU Hypothetical UPF0149 protein VV11551 32 1.3
sp|Q9CFV2|CARB_LACLA Carbamoyl-phosphate synthase large cha... 32 1.7
sp|Q40392|TMVRN_NICGU TMV resistance protein N 31 2.9
sp|O25597|Y943_HELPY Hypothetical oxidoreductase HP0943 31 2.9
sp|Q5JFR5|HISX_PYRKO Histidinol dehydrogenase (HDH) 30 5.0
>sp|P36022|DYHC_YEAST Dynein heavy chain, cytosolic (DYHC)
Length = 4092
Score = 36.6 bits (83), Expect = 0.070
Identities = 23/59 (38%), Positives = 34/59 (57%)
Frame = +1
Query: 202 LPEALKFVNEGLEESAEEMITTCDLSAELRIKSAEILFELELLEDARSVLDTILIEDEE 378
L E +FVN GLE+ E ++ +L+ L KS E+ E ++ARS LD +L+E E
Sbjct: 3010 LQENQRFVNVGLEKLNESVLKVNELNKTLSKKSTEL---TEKEKEARSTLDKMLMEQNE 3065
>sp|Q91VW5|GOGA4_MOUSE Golgin subfamily A member 4 (tGolgin-1)
Length = 2238
Score = 33.9 bits (76), Expect = 0.45
Identities = 39/178 (21%), Positives = 78/178 (43%)
Frame = +1
Query: 7 SLCELYMTDLCDEETAELKCNEFIKNAIEYDETNPAAWQSLASLNLIKNESELAKENIKK 186
SL + ++ D+ +E+T E + K +E + + ++L + + + E + + + K
Sbjct: 682 SLFQAHIQDM-NEKTLE----KLDKKQMELESVSSELSEALRARDQLAEELSVLRGDADK 736
Query: 187 SIGFWLPEALKFVNEGLEESAEEMITTCDLSAELRIKSAEILFELELLEDARSVLDTILI 366
+ +AL+ E + + + EL ++ AE + L+D S L +L
Sbjct: 737 -----MKQALEAELEEQRRHHQREVGSISEQQELTVRRAE-----KALKDELSRLGALLD 786
Query: 367 EDEEHFQAHYLMALIIESILDKSGEENKEELLGLIEDHAEMAIALANPVVESEAVAEM 540
E +EH + +E+ L KS E ++ L L H+E + A E +A+M
Sbjct: 787 ERDEHLRERQARVQDLEAHLQKSAGELQQALAKLDLLHSEQSAAREQAGAYEEQLAQM 844
>sp|Q24143|HR96_DROME Nuclear hormone receptor HR96 (dHR96)
Length = 723
Score = 32.3 bits (72), Expect = 1.3
Identities = 38/156 (24%), Positives = 67/156 (42%), Gaps = 8/156 (5%)
Frame = +1
Query: 31 DLCDEETAELK---CNEFI--KNAIEYDETNPAAWQSLASLNLIKNESELAKENIKKSIG 195
D+C E+ L C E + ++ + YD+ AAW+ + K+++G
Sbjct: 552 DMCQEDQVALLKGGCTEMMIMRSVMIYDDDR-AAWKV---------------PHTKENMG 595
Query: 196 FWLPEALKFVNEGLEESAEEMITTCDLSAELRIKSAEILFELELLEDARSVL---DTILI 366
+ LKF + E ++ ITT D + I+ + L ARS + D I +
Sbjct: 596 NIRTDLLKFAEGNIYEEHQKFITTFDEKWRMDENIILIMCAIVLFTSARSRVIHKDVIRL 655
Query: 367 EDEEHFQAHYLMALIIESILDKSGEENKEELLGLIE 474
E ++ YL+ +ES+ SG E + + LI+
Sbjct: 656 EQNSYY---YLLRRYLESVY--SGCEARNAFIKLIQ 686
>sp|Q94HW3|DRL11_ARATH Probable disease resistance protein RDL6/RF9
Length = 1049
Score = 32.3 bits (72), Expect = 1.3
Identities = 24/83 (28%), Positives = 38/83 (45%)
Frame = +1
Query: 145 IKNESELAKENIKKSIGFWLPEALKFVNEGLEESAEEMITTCDLSAELRIKSAEILFELE 324
I+ E + E + SIG LK++ E +T DL +E+R K A I+F+
Sbjct: 710 IELRKETSLETLAASIG-----GLKYL---------ESLTITDLGSEMRTKEAGIVFDFV 755
Query: 325 LLEDARSVLDTILIEDEEHFQAH 393
L+ L + E+HF +H
Sbjct: 756 YLKTLTLKLYMPRLSKEQHFPSH 778
>sp|Q92764|K1H5_HUMAN Keratin, type I cuticular Ha5 (Hair keratin, type I Ha5)
Length = 425
Score = 32.3 bits (72), Expect = 1.3
Identities = 26/117 (22%), Positives = 50/117 (42%)
Frame = +1
Query: 40 DEETAELKCNEFIKNAIEYDETNPAAWQSLASLNLIKNESELAKENIKKSIGFWLPEALK 219
+EE L+C + +E D P + L ++ + E EN ++ WL +
Sbjct: 206 EEEVNSLRCQLGDRLNVEVDAAPPVDLNRV--LEEMRCQYETLVENNRRDAEDWLDTQSE 263
Query: 220 FVNEGLEESAEEMITTCDLSAELRIKSAEILFELELLEDARSVLDTILIEDEEHFQA 390
+N+ + S+E++ + ELR + EL+ R L++ L E E + +
Sbjct: 264 ELNQQVVSSSEQLQSCQAEIIELRRTVNALEIELQAQHSMRDALESTLAETEARYSS 320
>sp|Q8DC90|YF51_VIBVU Hypothetical UPF0149 protein VV11551
Length = 191
Score = 32.3 bits (72), Expect = 1.3
Identities = 35/139 (25%), Positives = 63/139 (45%), Gaps = 5/139 (3%)
Frame = +1
Query: 199 WLPEALKFVNEGL--EESAEEMITTCDLSAELRIKSAEILFELELLEDARSVLDTILIED 372
W P + N+G+ +A E ++ S E++ L LL +A + D
Sbjct: 47 WQPMLFDYTNDGMGWPSAALEQAQALFNVTSAQLTSDEMVLNL-LLPNAEGEEAIFALAD 105
Query: 373 E-EHFQAHYLMAL-IIESILDKSGEENKEELLGLIEDHAEMAIALANPVVESEAVAEMTR 546
+ HY+ L + + +K+ EE KE L L E+ A + + E + + E
Sbjct: 106 ALSDWVNHYISGLGLAGAAFNKASEEAKEALADL-EEMARLGVD------EDDDLQEQAE 158
Query: 547 LLETIGVEH-RSCTVIVQA 600
LLE + +EH ++CT+++ A
Sbjct: 159 LLEQV-IEHVKACTLLIHA 176
>sp|Q9CFV2|CARB_LACLA Carbamoyl-phosphate synthase large chain (Carbamoyl-phosphate
synthetase ammonia chain)
Length = 1064
Score = 32.0 bits (71), Expect = 1.7
Identities = 33/142 (23%), Positives = 64/142 (45%), Gaps = 8/142 (5%)
Frame = +1
Query: 100 ETNPAAWQSLASLNLIKN--ESELAKENIK----KSIGFWLPEALKFVNEGLEESAEEMI 261
E NP A +++ L+ + N ++LA + I K +G+ EGL E+ + +
Sbjct: 832 EVNPRASRTVPFLSKVTNIPMAQLATQMILGKNLKDLGY---------TEGLAETPDMVH 882
Query: 262 TTCDLSAELRIKSAEILFELELLEDARSVLDTILIEDE--EHFQAHYLMALIIESILDKS 435
+ + ++ + L E+ ++ + +E + F+A L S+L
Sbjct: 883 VKAPVFSFTKLAKVDSLLGPEMKSTGEAMGSDVTLEKALYKSFEAAKLHMADYGSVLFTV 942
Query: 436 GEENKEELLGLIEDHAEMAIAL 501
+E+KEE L L +D AE+ +L
Sbjct: 943 ADEDKEETLALAKDFAEIGYSL 964
>sp|Q40392|TMVRN_NICGU TMV resistance protein N
Length = 1144
Score = 31.2 bits (69), Expect = 2.9
Identities = 34/132 (25%), Positives = 60/132 (45%), Gaps = 2/132 (1%)
Frame = +1
Query: 88 IEYDETNPAAWQSLASL--NLIKNESELAKENIKKSIGFWLPEALKFVNEGLEESAEEMI 261
+ Y + P A + SL NL E + A E++K + + + LK +GLE +EM
Sbjct: 379 VNYAKGLPLALKVWGSLLHNLRLTEWKSAIEHMKNNSYSGIIDKLKISYDGLEPKQQEMF 438
Query: 262 TTCDLSAELRIKSAEILFELELLEDARSVLDTILIEDEEHFQAHYLMALIIESILDKSGE 441
D++ LR + + + L++LE H A Y + ++I+ L E
Sbjct: 439 --LDIACFLRGEEKDYI--LQILESC-------------HIGAEYGLRILIDKSLVFISE 481
Query: 442 ENKEELLGLIED 477
N+ ++ LI+D
Sbjct: 482 YNQVQMHDLIQD 493
>sp|O25597|Y943_HELPY Hypothetical oxidoreductase HP0943
Length = 410
Score = 31.2 bits (69), Expect = 2.9
Identities = 20/75 (26%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Frame = +1
Query: 160 ELAKENIKKSIGFWLPEALKFVNEGLEESAEEMITTCDLSAELRIKSAEILFE-LELLED 336
++ + +K + FW E + LEES E+ + TCD S +I SA+ E + ++ D
Sbjct: 118 DMYHQMLKDGMDFWYKEDGLLMIYTLEESFEKKLKTCDNSGAYKILSAKETKEYMPVVND 177
Query: 337 ARSVLDTILIEDEEH 381
++ ++L+ + H
Sbjct: 178 --NICGSVLLTENAH 190
>sp|Q5JFR5|HISX_PYRKO Histidinol dehydrogenase (HDH)
Length = 376
Score = 30.4 bits (67), Expect = 5.0
Identities = 37/150 (24%), Positives = 65/150 (43%), Gaps = 24/150 (16%)
Frame = +1
Query: 217 KFVNE---------GLEESA--EEMITTCDLSAELRIKSAEILFELELLEDARSVLDTIL 363
+FVNE G++ A E+ D SA+ A++L +LE +D+++ L T
Sbjct: 183 RFVNEAKRQVFGIVGIDSLAGPSEIAVIADESADKDYVLADLLSQLEHGKDSKAWLLTTS 242
Query: 364 IEDEEHFQAHYLMALI---IESILDKSGE----------ENKEELLGLIEDHAEMAIALA 504
E ++ + L+ +E +K+ E EN EEL+ LIE+ + +
Sbjct: 243 RELADYCSREGIEVLLCRNLEECAEKANEIAPEHLEIITENPEELVDLIENAGAIYLGPY 302
Query: 505 NPVVESEAVAEMTRLLETIGVEHRSCTVIV 594
PV ++ + +L T G S + V
Sbjct: 303 TPVPAADYFLGVNHVLPTGGAARFSGVLTV 332
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,537,260
Number of Sequences: 369166
Number of extensions: 1313143
Number of successful extensions: 3944
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3846
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3943
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6486082400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)