Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_011_A09
(456 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q94HW3|DRL11_ARATH Probable disease resistance protein R... 33 0.39
sp|Q91Z38|TTC1_MOUSE Tetratricopeptide repeat protein 1 (TP... 31 1.1
sp|P70354|MSX3_MOUSE Homeobox protein MSX-3 30 3.3
sp|Q99614|TTC1_HUMAN Tetratricopeptide repeat protein 1 (TP... 29 4.3
sp|P27180|ATPD_SYNY3 ATP synthase delta chain 29 5.6
sp|P03872|REP2_YEAST Trans-acting factor C (REP2) (Protein ... 29 5.6
sp|Q96KN7|RPGR1_HUMAN X-linked retinitis pigmentosa GTPase ... 28 7.3
sp|Q72PD0|TRPD_LEPIC Anthranilate phosphoribosyltransferase 28 7.3
sp|Q9VWR2|CP308_DROME Probable cytochrome P450 308a1 (CYPCC... 28 7.3
sp|Q8F708|TRPD_LEPIN Anthranilate phosphoribosyltransferase 28 7.3
>sp|Q94HW3|DRL11_ARATH Probable disease resistance protein RDL6/RF9
Length = 1049
Score = 32.7 bits (73), Expect = 0.39
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 8/74 (10%)
Frame = +3
Query: 21 EMITTCDLSAELRIKSAEILFELELLEDARSVLDTILIEDEEHFQAH----YLMALIIES 188
E +T DL +E+R K A I+F+ L+ L + E+HF +H YL +E
Sbjct: 732 ESLTITDLGSEMRTKEAGIVFDFVYLKTLTLKLYMPRLSKEQHFPSHLTTLYLQHCRLEE 791
Query: 189 ----ILDKSGENKE 218
IL+K + KE
Sbjct: 792 DPMPILEKLHQLKE 805
>sp|Q91Z38|TTC1_MOUSE Tetratricopeptide repeat protein 1 (TPR repeat protein 1)
Length = 292
Score = 31.2 bits (69), Expect = 1.1
Identities = 20/92 (21%), Positives = 44/92 (47%), Gaps = 7/92 (7%)
Frame = +3
Query: 6 EESAEEMITTCDLSAELR-------IKSAEILFELELLEDARSVLDTILIEDEEHFQAHY 164
++ E IT C + +L ++ AE+ + + L++A ++L +D QA
Sbjct: 168 QDKKETAITDCSKAIQLNPTYIRAILRRAELYEKTDKLDEALEDYKSVLEKDPSVHQARE 227
Query: 165 LMALIIESILDKSGENKEELLGLIEDHAEMAI 260
+ + I +++ KEE+LG ++D + +
Sbjct: 228 ACMRLPKQIEERNERLKEEMLGKLKDLGNLVL 259
>sp|P70354|MSX3_MOUSE Homeobox protein MSX-3
Length = 204
Score = 29.6 bits (65), Expect = 3.3
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -1
Query: 162 SVPGSVPRPL*ESCPKRISRPPVIPIRK 79
S PG+ P P+ SCP R PP +RK
Sbjct: 56 SKPGAWPPPVAHSCPPRAPSPPPCTLRK 83
>sp|Q99614|TTC1_HUMAN Tetratricopeptide repeat protein 1 (TPR repeat protein 1)
Length = 292
Score = 29.3 bits (64), Expect = 4.3
Identities = 20/92 (21%), Positives = 43/92 (46%), Gaps = 7/92 (7%)
Frame = +3
Query: 6 EESAEEMITTCDLSAELR-------IKSAEILFELELLEDARSVLDTILIEDEEHFQAHY 164
++ E I C + +L ++ AE+ + + L++A +IL +D QA
Sbjct: 168 QDKKEMAINDCSKAIQLNPSYIRAILRRAELYEKTDKLDEALEDYKSILEKDPSIHQARE 227
Query: 165 LMALIIESILDKSGENKEELLGLIEDHAEMAI 260
+ + I +++ KEE+LG ++D + +
Sbjct: 228 ACMRLPKQIEERNERLKEEMLGKLKDLGNLVL 259
>sp|P27180|ATPD_SYNY3 ATP synthase delta chain
Length = 185
Score = 28.9 bits (63), Expect = 5.6
Identities = 11/36 (30%), Positives = 24/36 (66%)
Frame = +3
Query: 183 ESILDKSGENKEELLGLIEDHAEMAIALANPVVESE 290
+++ + G+N LL L++D +++ L++PVV+ E
Sbjct: 25 QNLTEVFGDNLRSLLTLLQDSPDLSAVLSSPVVKDE 60
>sp|P03872|REP2_YEAST Trans-acting factor C (REP2) (Protein charlie)
Length = 296
Score = 28.9 bits (63), Expect = 5.6
Identities = 28/120 (23%), Positives = 58/120 (48%), Gaps = 12/120 (10%)
Frame = +3
Query: 3 LEESAEEMITTCDLSAELRIKSAEILFE---------LELLEDARSVLDTILIED---EE 146
L+ SAE+ + D SAE+ + +A+++ E L E +++ +D +L + +
Sbjct: 69 LDSSAEDSSVSSDSSAEVILPAAKMVKERFDSIGNGMLSSQEASQAAIDLMLQNNKLLDN 128
Query: 147 HFQAHYLMALIIESILDKSGENKEELLGLIEDHAEMAIALANPVVESEAVAKMTSLLEKI 326
Q + +A+II + +K + E+L D ++ L P E V K+ S++ ++
Sbjct: 129 RKQLYKSIAIIIGRLPEKDKKRATEMLMRKMDCTQL---LVPPAPTEEDVMKLVSVVTQL 185
>sp|Q96KN7|RPGR1_HUMAN X-linked retinitis pigmentosa GTPase regulator-interacting protein
1 (RPGR-interacting protein 1)
Length = 1286
Score = 28.5 bits (62), Expect = 7.3
Identities = 19/82 (23%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Frame = +3
Query: 84 ELELLEDARS-VLDTILIEDEEHFQAHYLMALIIESILDKSGENKEELLGLIEDHAEMAI 260
E +LL D +L+++L + Q H+ LI E + + + +++L +ED ++ +
Sbjct: 370 ERKLLNDNYDKLLESMLDSSDSSSQPHWSNELIAEQLQQQVSQLQDQLDAELEDKRKVLL 429
Query: 261 ALANPVVESEAV-AKMTSLLEK 323
L+ ++E + ++T++L+K
Sbjct: 430 ELSREKAQNEDLKLEVTNILQK 451
>sp|Q72PD0|TRPD_LEPIC Anthranilate phosphoribosyltransferase
Length = 336
Score = 28.5 bits (62), Expect = 7.3
Identities = 17/37 (45%), Positives = 22/37 (59%)
Frame = +3
Query: 189 ILDKSGENKEELLGLIEDHAEMAIALANPVVESEAVA 299
IL S NKEE+ DHAE+ LA V+ SE++A
Sbjct: 254 ILGLSSLNKEEVYASSSDHAEV---LARKVLNSESIA 287
>sp|Q9VWR2|CP308_DROME Probable cytochrome P450 308a1 (CYPCCCVIIIA1)
Length = 490
Score = 28.5 bits (62), Expect = 7.3
Identities = 24/84 (28%), Positives = 33/84 (39%), Gaps = 7/84 (8%)
Frame = -1
Query: 420 ARRYTFDTLLLPR*NRLHCLNNHCCMIDVRRLFSPTNSSSWLQPRSQRQDWP-------T 262
A RYT + + + L+ HC I +R P+ WL P Q W
Sbjct: 171 ATRYTLQVVA----SAIFGLDAHCLGIHMRVAHEPSRWLEWLAPLFQPSVWSLLETMSLL 226
Query: 261 RSPFLRDLQSNRAVLLCFLHSYRE 190
+P L L +R V L H +RE
Sbjct: 227 HTPRLGRLIGHRYVPLPLQHWFRE 250
>sp|Q8F708|TRPD_LEPIN Anthranilate phosphoribosyltransferase
Length = 336
Score = 28.5 bits (62), Expect = 7.3
Identities = 17/37 (45%), Positives = 22/37 (59%)
Frame = +3
Query: 189 ILDKSGENKEELLGLIEDHAEMAIALANPVVESEAVA 299
IL S NKEE+ DHAE+ LA V+ SE++A
Sbjct: 254 ILGLSSLNKEEVYASSSDHAEV---LARKVLNSESIA 287
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,348,650
Number of Sequences: 369166
Number of extensions: 799788
Number of successful extensions: 2282
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2238
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2281
length of database: 68,354,980
effective HSP length: 101
effective length of database: 49,696,745
effective search space used: 2484837250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)