Planaria EST Database

DrC_00905

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00905
         (918 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P08603|CFAH_HUMAN  Complement factor H precursor (H facto...    32   1.9  
sp|Q9CHT2|GREA_LACLA  Transcription elongation factor greA (...    32   3.3  
sp|P33334|PRP8_YEAST  Pre-mRNA splicing factor PRP8                31   4.3  
sp|P62815|VATB2_RAT  Vacuolar ATP synthase subunit B, brain ...    31   4.3  
sp|P21281|VATB2_HUMAN  Vacuolar ATP synthase subunit B, brai...    31   4.3  
sp|P31408|VATB2_BOVIN  Vacuolar ATP synthase subunit B, brai...    31   4.3  
sp|P49712|VATB_CHICK  Vacuolar ATP synthase subunit B (V-ATP...    30   7.3  
sp|Q27896|TRF_DROME  TBP-related factor                            30   7.3  
sp|Q09772|RDH54_SCHPO  Meiotic recombination protein rdh54 (...    30   7.3  
sp|P62000|TBP_PYRFU  TATA-box binding protein (TATA-box fact...    30   9.5  

>sp|P08603|CFAH_HUMAN Complement factor H precursor (H factor 1)
          Length = 1231

 Score = 32.3 bits (72), Expect = 1.9
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -1

Query: 888 RCSQYSCKDPDIINRLLI-QETLYKELSSHQKGVRL*YDY 772
           +C + SCK PD+IN   I Q+ +YKE    Q    + Y+Y
Sbjct: 204 KCVEISCKSPDVINGSPISQKIIYKENERFQYKCNMGYEY 243

>sp|Q9CHT2|GREA_LACLA Transcription elongation factor greA (Transcript cleavage factor
           greA)
          Length = 156

 Score = 31.6 bits (70), Expect = 3.3
 Identities = 20/53 (37%), Positives = 28/53 (52%)
 Frame = +3

Query: 639 ADDEVHLGKNPTIASISLGSTRVFEICYRKDLYQGYNSKERNPFSSRIKDEPP 797
           A DEV LGKN T   + +G T        ++ YQ   + E +PFS +I +E P
Sbjct: 82  AKDEVALGKNVTF--VEVGET-------DEESYQIVGTAEADPFSGKISNESP 125

>sp|P33334|PRP8_YEAST Pre-mRNA splicing factor PRP8
          Length = 2413

 Score = 31.2 bits (69), Expect = 4.3
 Identities = 18/77 (23%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
 Frame = +3

Query: 285 KDSLIDDLFYKMPSSINYMKEFLPPNKASELFRYFLQNLPWEQRENATPSG---QKFLEP 455
           ++S++DD+   MP SI   K        SE +R +  N+PW+      P     +++++ 
Sbjct: 759 RNSVMDDILEMMPESIRQKKARTILQHLSEAWRCWKANIPWDVPGMPAPIKKIIERYIKS 818

Query: 456 RKTCWYGLP-YSYSKVK 503
           +   W     Y+  ++K
Sbjct: 819 KADAWVSAAHYNRERIK 835

>sp|P62815|VATB2_RAT Vacuolar ATP synthase subunit B, brain isoform (V-ATPase B2
           subunit) (Vacuolar proton pump B isoform 2)
           (Endomembrane proton pump 58 kDa subunit)
 sp|P62814|VATB2_MOUSE Vacuolar ATP synthase subunit B, brain isoform (V-ATPase B2
           subunit) (Vacuolar proton pump B isoform 2)
           (Endomembrane proton pump 58 kDa subunit)
          Length = 511

 Score = 31.2 bits (69), Expect = 4.3
 Identities = 19/68 (27%), Positives = 33/68 (48%)
 Frame = +1

Query: 700 QECLKFAIVKISTKVIIAKKETPSVVVSKTNPLLMAAQFFIECFLNQQPVDNVRIFTGIL 879
           Q C +  +VK S  V+   +E  ++V +     +  A+FF   F     +DNV +F  + 
Sbjct: 205 QICRQAGLVKKSKDVVDYSEENFAIVFAAMGVNMETARFFKSDFEENGSMDNVCLFLNLA 264

Query: 880 AAPSSQRI 903
             P+ +RI
Sbjct: 265 NDPTIERI 272

>sp|P21281|VATB2_HUMAN Vacuolar ATP synthase subunit B, brain isoform (V-ATPase B2
           subunit) (Vacuolar proton pump B isoform 2)
           (Endomembrane proton pump 58 kDa subunit) (HO57)
          Length = 511

 Score = 31.2 bits (69), Expect = 4.3
 Identities = 19/68 (27%), Positives = 33/68 (48%)
 Frame = +1

Query: 700 QECLKFAIVKISTKVIIAKKETPSVVVSKTNPLLMAAQFFIECFLNQQPVDNVRIFTGIL 879
           Q C +  +VK S  V+   +E  ++V +     +  A+FF   F     +DNV +F  + 
Sbjct: 205 QICRQAGLVKKSKDVVDYSEENFAIVFAAMGVNMETARFFKSDFEENGSMDNVCLFLNLA 264

Query: 880 AAPSSQRI 903
             P+ +RI
Sbjct: 265 NDPTIERI 272

>sp|P31408|VATB2_BOVIN Vacuolar ATP synthase subunit B, brain isoform (V-ATPase B2
           subunit) (Vacuolar proton pump B isoform 2)
           (Endomembrane proton pump 58 kDa subunit)
          Length = 511

 Score = 31.2 bits (69), Expect = 4.3
 Identities = 19/68 (27%), Positives = 33/68 (48%)
 Frame = +1

Query: 700 QECLKFAIVKISTKVIIAKKETPSVVVSKTNPLLMAAQFFIECFLNQQPVDNVRIFTGIL 879
           Q C +  +VK S  V+   +E  ++V +     +  A+FF   F     +DNV +F  + 
Sbjct: 205 QICRQAGLVKKSKDVVDYSEENFAIVFAAMGVNMETARFFKSDFEQNGSMDNVCLFLNLA 264

Query: 880 AAPSSQRI 903
             P+ +RI
Sbjct: 265 NDPTIERI 272

>sp|P49712|VATB_CHICK Vacuolar ATP synthase subunit B (V-ATPase B subunit) (Vacuolar
           proton pump B subunit)
          Length = 453

 Score = 30.4 bits (67), Expect = 7.3
 Identities = 19/68 (27%), Positives = 33/68 (48%)
 Frame = +1

Query: 700 QECLKFAIVKISTKVIIAKKETPSVVVSKTNPLLMAAQFFIECFLNQQPVDNVRIFTGIL 879
           Q C +  +VK S  V+   +E  ++V +     +  A+FF   F     +DNV +F  + 
Sbjct: 146 QICRQAGLVKKSKDVMDYSEENFAIVFAAMGVNMETARFFKSDFEENGSMDNVCLFLNLA 205

Query: 880 AAPSSQRI 903
             P+ +RI
Sbjct: 206 NDPTIERI 213

>sp|Q27896|TRF_DROME TBP-related factor
          Length = 224

 Score = 30.4 bits (67), Expect = 7.3
 Identities = 17/61 (27%), Positives = 31/61 (50%)
 Frame = +1

Query: 343 KNFYHPIKLQNFSAIFSKICHGNSEKMLLLVVKSFWNPERHVGMVCHIHIRK*KCLLTKI 522
           K+  H I+LQN  A FS  C  + + +      S ++P+R  G++  +H  +   L+ + 
Sbjct: 43  KDAQHEIRLQNIVATFSVNCELDLKAINSRTRNSEYSPKRFRGVIMRMHSPRCTALIFRT 102

Query: 523 G 525
           G
Sbjct: 103 G 103

>sp|Q09772|RDH54_SCHPO Meiotic recombination protein rdh54 (RAD54 protein homolog 2)
          Length = 811

 Score = 30.4 bits (67), Expect = 7.3
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -3

Query: 589 LLKGLPFENDWTEFIKSFNSVSQFSLGGIFTFEYEYGKP 473
           LL G P +ND +E+    N +   SLG   +F+ +Y +P
Sbjct: 368 LLTGTPLQNDLSEYFSMVNFIIPGSLGTPNSFKAQYERP 406

>sp|P62000|TBP_PYRFU TATA-box binding protein (TATA-box factor) (TATA sequence-binding
           protein) (TBP) (Box A binding protein) (BAP)
 sp|P62001|TBP_PYRWO TATA-box binding protein (TATA-box factor) (TATA sequence-binding
           protein) (TBP) (Box A binding protein) (BAP)
          Length = 191

 Score = 30.0 bits (66), Expect = 9.5
 Identities = 16/55 (29%), Positives = 27/55 (49%)
 Frame = +1

Query: 361 IKLQNFSAIFSKICHGNSEKMLLLVVKSFWNPERHVGMVCHIHIRK*KCLLTKIG 525
           ++++N  A        + EK+L L   S +NPE   G++CH+   K   L+   G
Sbjct: 9   LRIENIVASVDLFAQLDLEKVLDLCPNSKYNPEEFPGIICHLDDPKVALLIFSSG 63

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 102,447,108
Number of Sequences: 369166
Number of extensions: 2125930
Number of successful extensions: 5209
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5016
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5208
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9366655350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00905

  1. Dr_sW_022_M10
  2. Dr_sW_001_N10