Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_022_M10
(784 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P33334|PRP8_YEAST Pre-mRNA splicing factor PRP8 31 3.3
sp|Q27896|TRF_DROME TBP-related factor 30 5.7
sp|Q09772|RDH54_SCHPO Meiotic recombination protein rdh54 (... 30 5.7
sp|P62000|TBP_PYRFU TATA-box binding protein (TATA-box fact... 30 7.4
sp|Q87EA7|MURD_XYLFT UDP-N-acetylmuramoylalanine--D-glutama... 30 7.4
sp|Q9PEB0|MURD_XYLFA UDP-N-acetylmuramoylalanine--D-glutama... 30 9.7
sp|Q5H2Y1|MURD_XANOR UDP-N-acetylmuramoylalanine--D-glutama... 30 9.7
>sp|P33334|PRP8_YEAST Pre-mRNA splicing factor PRP8
Length = 2413
Score = 31.2 bits (69), Expect = 3.3
Identities = 18/77 (23%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
Frame = +3
Query: 285 KDSLIDDLFYKMPSSINYMKEFLPPNKASELFRYFLQNLPWEQRENATPSG---QKFLEP 455
++S++DD+ MP SI K SE +R + N+PW+ P +++++
Sbjct: 759 RNSVMDDILEMMPESIRQKKARTILQHLSEAWRCWKANIPWDVPGMPAPIKKIIERYIKS 818
Query: 456 RKTCWYGLP-YSYSKVK 503
+ W Y+ ++K
Sbjct: 819 KADAWVSAAHYNRERIK 835
>sp|Q27896|TRF_DROME TBP-related factor
Length = 224
Score = 30.4 bits (67), Expect = 5.7
Identities = 17/61 (27%), Positives = 31/61 (50%)
Frame = +1
Query: 343 KNFYHPIKLQNFSAIFSKICHGNSEKMLLLVVKSFWNPERHVGMVCHIHIRK*KCLLTKI 522
K+ H I+LQN A FS C + + + S ++P+R G++ +H + L+ +
Sbjct: 43 KDAQHEIRLQNIVATFSVNCELDLKAINSRTRNSEYSPKRFRGVIMRMHSPRCTALIFRT 102
Query: 523 G 525
G
Sbjct: 103 G 103
>sp|Q09772|RDH54_SCHPO Meiotic recombination protein rdh54 (RAD54 protein homolog 2)
Length = 811
Score = 30.4 bits (67), Expect = 5.7
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = -1
Query: 589 LLKGLPFENDWTEFIKSFNSVSQFSLGGIFTFEYEYGKP 473
LL G P +ND +E+ N + SLG +F+ +Y +P
Sbjct: 368 LLTGTPLQNDLSEYFSMVNFIIPGSLGTPNSFKAQYERP 406
>sp|P62000|TBP_PYRFU TATA-box binding protein (TATA-box factor) (TATA sequence-binding
protein) (TBP) (Box A binding protein) (BAP)
sp|P62001|TBP_PYRWO TATA-box binding protein (TATA-box factor) (TATA sequence-binding
protein) (TBP) (Box A binding protein) (BAP)
Length = 191
Score = 30.0 bits (66), Expect = 7.4
Identities = 16/55 (29%), Positives = 27/55 (49%)
Frame = +1
Query: 361 IKLQNFSAIFSKICHGNSEKMLLLVVKSFWNPERHVGMVCHIHIRK*KCLLTKIG 525
++++N A + EK+L L S +NPE G++CH+ K L+ G
Sbjct: 9 LRIENIVASVDLFAQLDLEKVLDLCPNSKYNPEEFPGIICHLDDPKVALLIFSSG 63
>sp|Q87EA7|MURD_XYLFT UDP-N-acetylmuramoylalanine--D-glutamate ligase
(UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase)
(D-glutamic acid-adding enzyme)
Length = 468
Score = 30.0 bits (66), Expect = 7.4
Identities = 15/72 (20%), Positives = 32/72 (44%)
Frame = +3
Query: 474 GLPYSYSKVKMPPNENWDTELKDLMNSVQSFSNGRPFNSVMCNLYMGAKNSIDWHADDEV 653
GLP P E W EL + + S RP +++ N++ +DWH ++
Sbjct: 151 GLPLLELLTPQPAPEYWAIELSSYQTADVAGSGARPALALVLNVF---PEHLDWHGGEQR 207
Query: 654 HLGKNPTIASIS 689
++ ++ +++
Sbjct: 208 YINDKLSLVTVA 219
>sp|Q9PEB0|MURD_XYLFA UDP-N-acetylmuramoylalanine--D-glutamate ligase
(UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase)
(D-glutamic acid-adding enzyme)
Length = 468
Score = 29.6 bits (65), Expect = 9.7
Identities = 14/72 (19%), Positives = 31/72 (43%)
Frame = +3
Query: 474 GLPYSYSKVKMPPNENWDTELKDLMNSVQSFSNGRPFNSVMCNLYMGAKNSIDWHADDEV 653
G+P P E W EL + S RP +++ N++ +DWH ++
Sbjct: 151 GMPLLELLTPQPTPEYWAIELSSYQTGDVARSGARPVLALVLNVF---PEHLDWHGSEQR 207
Query: 654 HLGKNPTIASIS 689
++ ++ +++
Sbjct: 208 YINDKLSLVTVT 219
>sp|Q5H2Y1|MURD_XANOR UDP-N-acetylmuramoylalanine--D-glutamate ligase
(UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase)
(D-glutamic acid-adding enzyme)
Length = 468
Score = 29.6 bits (65), Expect = 9.7
Identities = 17/58 (29%), Positives = 22/58 (37%)
Frame = +3
Query: 474 GLPYSYSKVKMPPNENWDTELKDLMNSVQSFSNGRPFNSVMCNLYMGAKNSIDWHADD 647
G P PP W EL S RP +V+ NL+ +DWH D+
Sbjct: 151 GQPLLEVLAPQPPPAYWAIELSSYQTGDVGRSGARPELAVVLNLF---PEHLDWHGDE 205
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85,564,611
Number of Sequences: 369166
Number of extensions: 1774012
Number of successful extensions: 4520
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4379
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4519
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 7357347200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)