Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_001_N10
(896 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P08603|CFAH_HUMAN Complement factor H precursor (H facto... 32 1.8
sp|Q9CHT2|GREA_LACLA Transcription elongation factor greA (... 32 3.1
sp|P33334|PRP8_YEAST Pre-mRNA splicing factor PRP8 31 4.1
sp|P62815|VATB2_RAT Vacuolar ATP synthase subunit B, brain ... 31 4.1
sp|P21281|VATB2_HUMAN Vacuolar ATP synthase subunit B, brai... 31 4.1
sp|P31408|VATB2_BOVIN Vacuolar ATP synthase subunit B, brai... 31 4.1
sp|P49712|VATB_CHICK Vacuolar ATP synthase subunit B (V-ATP... 30 7.0
sp|Q27896|TRF_DROME TBP-related factor 30 7.0
sp|Q09772|RDH54_SCHPO Meiotic recombination protein rdh54 (... 30 7.0
sp|P62000|TBP_PYRFU TATA-box binding protein (TATA-box fact... 30 9.1
>sp|P08603|CFAH_HUMAN Complement factor H precursor (H factor 1)
Length = 1231
Score = 32.3 bits (72), Expect = 1.8
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = -1
Query: 866 RCSQYSCKDPDIINRLLI-QETLYKELSSHQKGVRL*YDY 750
+C + SCK PD+IN I Q+ +YKE Q + Y+Y
Sbjct: 204 KCVEISCKSPDVINGSPISQKIIYKENERFQYKCNMGYEY 243
>sp|Q9CHT2|GREA_LACLA Transcription elongation factor greA (Transcript cleavage factor
greA)
Length = 156
Score = 31.6 bits (70), Expect = 3.1
Identities = 20/53 (37%), Positives = 28/53 (52%)
Frame = +2
Query: 617 ADDEVHLGKNPTIASISLGSTRVFEICYRKDLYQGYNSKERNPFSSRIKDEPP 775
A DEV LGKN T + +G T ++ YQ + E +PFS +I +E P
Sbjct: 82 AKDEVALGKNVTF--VEVGET-------DEESYQIVGTAEADPFSGKISNESP 125
>sp|P33334|PRP8_YEAST Pre-mRNA splicing factor PRP8
Length = 2413
Score = 31.2 bits (69), Expect = 4.1
Identities = 18/77 (23%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
Frame = +2
Query: 263 KDSLIDDLFYKMPSSINYMKEFLPPNKASELFRYFLQNLPWEQRENATPSG---QKFLEP 433
++S++DD+ MP SI K SE +R + N+PW+ P +++++
Sbjct: 759 RNSVMDDILEMMPESIRQKKARTILQHLSEAWRCWKANIPWDVPGMPAPIKKIIERYIKS 818
Query: 434 RKTCWYGLP-YSYSKVK 481
+ W Y+ ++K
Sbjct: 819 KADAWVSAAHYNRERIK 835
>sp|P62815|VATB2_RAT Vacuolar ATP synthase subunit B, brain isoform (V-ATPase B2
subunit) (Vacuolar proton pump B isoform 2)
(Endomembrane proton pump 58 kDa subunit)
sp|P62814|VATB2_MOUSE Vacuolar ATP synthase subunit B, brain isoform (V-ATPase B2
subunit) (Vacuolar proton pump B isoform 2)
(Endomembrane proton pump 58 kDa subunit)
Length = 511
Score = 31.2 bits (69), Expect = 4.1
Identities = 19/68 (27%), Positives = 33/68 (48%)
Frame = +3
Query: 678 QECLKFAIVKISTKVIIAKKETPSVVVSKTNPLLMAAQFFIECFLNQQPVDNVRIFTGIL 857
Q C + +VK S V+ +E ++V + + A+FF F +DNV +F +
Sbjct: 205 QICRQAGLVKKSKDVVDYSEENFAIVFAAMGVNMETARFFKSDFEENGSMDNVCLFLNLA 264
Query: 858 AAPSSQRI 881
P+ +RI
Sbjct: 265 NDPTIERI 272
>sp|P21281|VATB2_HUMAN Vacuolar ATP synthase subunit B, brain isoform (V-ATPase B2
subunit) (Vacuolar proton pump B isoform 2)
(Endomembrane proton pump 58 kDa subunit) (HO57)
Length = 511
Score = 31.2 bits (69), Expect = 4.1
Identities = 19/68 (27%), Positives = 33/68 (48%)
Frame = +3
Query: 678 QECLKFAIVKISTKVIIAKKETPSVVVSKTNPLLMAAQFFIECFLNQQPVDNVRIFTGIL 857
Q C + +VK S V+ +E ++V + + A+FF F +DNV +F +
Sbjct: 205 QICRQAGLVKKSKDVVDYSEENFAIVFAAMGVNMETARFFKSDFEENGSMDNVCLFLNLA 264
Query: 858 AAPSSQRI 881
P+ +RI
Sbjct: 265 NDPTIERI 272
>sp|P31408|VATB2_BOVIN Vacuolar ATP synthase subunit B, brain isoform (V-ATPase B2
subunit) (Vacuolar proton pump B isoform 2)
(Endomembrane proton pump 58 kDa subunit)
Length = 511
Score = 31.2 bits (69), Expect = 4.1
Identities = 19/68 (27%), Positives = 33/68 (48%)
Frame = +3
Query: 678 QECLKFAIVKISTKVIIAKKETPSVVVSKTNPLLMAAQFFIECFLNQQPVDNVRIFTGIL 857
Q C + +VK S V+ +E ++V + + A+FF F +DNV +F +
Sbjct: 205 QICRQAGLVKKSKDVVDYSEENFAIVFAAMGVNMETARFFKSDFEQNGSMDNVCLFLNLA 264
Query: 858 AAPSSQRI 881
P+ +RI
Sbjct: 265 NDPTIERI 272
>sp|P49712|VATB_CHICK Vacuolar ATP synthase subunit B (V-ATPase B subunit) (Vacuolar
proton pump B subunit)
Length = 453
Score = 30.4 bits (67), Expect = 7.0
Identities = 19/68 (27%), Positives = 33/68 (48%)
Frame = +3
Query: 678 QECLKFAIVKISTKVIIAKKETPSVVVSKTNPLLMAAQFFIECFLNQQPVDNVRIFTGIL 857
Q C + +VK S V+ +E ++V + + A+FF F +DNV +F +
Sbjct: 146 QICRQAGLVKKSKDVMDYSEENFAIVFAAMGVNMETARFFKSDFEENGSMDNVCLFLNLA 205
Query: 858 AAPSSQRI 881
P+ +RI
Sbjct: 206 NDPTIERI 213
>sp|Q27896|TRF_DROME TBP-related factor
Length = 224
Score = 30.4 bits (67), Expect = 7.0
Identities = 17/61 (27%), Positives = 31/61 (50%)
Frame = +3
Query: 321 KNFYHPIKLQNFSAIFSKICHGNSEKMLLLVVKSFWNPERHVGMVCHIHIRK*KCLLTKI 500
K+ H I+LQN A FS C + + + S ++P+R G++ +H + L+ +
Sbjct: 43 KDAQHEIRLQNIVATFSVNCELDLKAINSRTRNSEYSPKRFRGVIMRMHSPRCTALIFRT 102
Query: 501 G 503
G
Sbjct: 103 G 103
>sp|Q09772|RDH54_SCHPO Meiotic recombination protein rdh54 (RAD54 protein homolog 2)
Length = 811
Score = 30.4 bits (67), Expect = 7.0
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = -3
Query: 567 LLKGLPFENDWTEFIKSFNSVSQFSLGGIFTFEYEYGKP 451
LL G P +ND +E+ N + SLG +F+ +Y +P
Sbjct: 368 LLTGTPLQNDLSEYFSMVNFIIPGSLGTPNSFKAQYERP 406
>sp|P62000|TBP_PYRFU TATA-box binding protein (TATA-box factor) (TATA sequence-binding
protein) (TBP) (Box A binding protein) (BAP)
sp|P62001|TBP_PYRWO TATA-box binding protein (TATA-box factor) (TATA sequence-binding
protein) (TBP) (Box A binding protein) (BAP)
Length = 191
Score = 30.0 bits (66), Expect = 9.1
Identities = 16/55 (29%), Positives = 27/55 (49%)
Frame = +3
Query: 339 IKLQNFSAIFSKICHGNSEKMLLLVVKSFWNPERHVGMVCHIHIRK*KCLLTKIG 503
++++N A + EK+L L S +NPE G++CH+ K L+ G
Sbjct: 9 LRIENIVASVDLFAQLDLEKVLDLCPNSKYNPEEFPGIICHLDDPKVALLIFSSG 63
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 101,069,832
Number of Sequences: 369166
Number of extensions: 2103472
Number of successful extensions: 5201
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5008
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5200
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9030416440
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)