DrC_00904
- Cluster detail
- GO Category : Not Available
- Consensus Sequence :
BLASTX 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= DrC_00904 (736 letters) Database: Non-redundant SwissProt sequences 184,735 sequences; 68,354,980 total letters Score E Sequences producing significant alignments: (bits) Value sp|P14349|GAG_FOAMV Gag polyprotein (Core polyprotein) [Con... 33 0.60 sp|P54717|GLVR_BACSU HTH-type transcriptional regulator glv... 33 0.60 sp|P50109|PSP2_YEAST Protein PSP2 (Mitochondrial regulator ... 32 1.3 sp|Q95UE8|PE55_LUCCU Peritrophin-55 precursor 32 1.3 sp|P10470|COAT_PLRV Coat protein 32 1.8 sp|P17522|COAT_PLRV1 Coat protein 31 3.9 sp|P11624|COAT_PLRVW Coat protein 31 3.9 sp|P17521|COAT_PLRVR Coat protein 31 3.9 sp|Q22053|FBRL_CAEEL Fibrillarin 30 6.7
>sp|P14349|GAG_FOAMV Gag polyprotein (Core polyprotein) [Contains: Protease ] Length = 811 Score = 33.5 bits (75), Expect = 0.60 Identities = 26/93 (27%), Positives = 36/93 (38%), Gaps = 4/93 (4%) Frame = +1 Query: 112 TLNERFSRLNQK----KPQSFTPPIKRGGIQKPRASNVRSLRGRLNQMSSNRLTANNSAP 279 T N+ LNQ +P+++ P GG + N + R + S P Sbjct: 524 TQNQNQDNLNQGGYNLRPRTYQPQRYGGGRGRRWNDNTNNQESRPSDQGSQ-----TPRP 578 Query: 280 NTSFRGSSFNRRGLSRPGFNRGGRGGQNTNSIS 378 N + G N+ RP RGGRG N N S Sbjct: 579 NQAGSGVRGNQSQTPRPAAGRGGRGNHNRNQRS 611
>sp|P54717|GLVR_BACSU HTH-type transcriptional regulator glvR (Glv operon regulatory protein) Length = 254 Score = 33.5 bits (75), Expect = 0.60 Identities = 16/49 (32%), Positives = 32/49 (65%), Gaps = 1/49 (2%) Frame = -2 Query: 696 RIIINIFLPQFKY*FLI-DSSLINLLKKTFQVNIIYIVIKTILQTPKAV 553 R + +F+P+ +Y LI D++ NL++ F+VN ++I+I +TP+ + Sbjct: 130 RDLQRMFIPRHRYLILIEDTNEFNLMRDDFKVNDLFIIISLSGETPELI 178
>sp|P50109|PSP2_YEAST Protein PSP2 (Mitochondrial regulator of splicing 15) Length = 578 Score = 32.3 bits (72), Expect = 1.3 Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 5/60 (8%) Frame = +1 Query: 229 RLNQMSSNRLTANNSAPNTSFRGSSFNRRGLSRPGF-----NRGGRGGQNTNSISFNQSN 393 R + MS + N++ N +FRGS+ R G + + NRG RGG S S+N +N Sbjct: 383 REHSMSRTKYNGNHNNNNGNFRGSNRYRGGPNGSSYKGGHNNRGNRGGYRGGS-SYNNNN 441
Score = 30.8 bits (68), Expect = 3.9
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = +1
Query: 244 SSNRLTANNSAPNTSFRGSSFNR-RGLSRPGFN-RGGRGGQNTNSISFNQSN 393
++ R N+S N RG F R RG R +N RG RGG+ ++ N +N
Sbjct: 520 NNGRGNYNSSGMNGGSRGRGFGRGRGFGRGAYNNRGSRGGRGSSGNYSNYNN 571
>sp|Q95UE8|PE55_LUCCU Peritrophin-55 precursor Length = 220 Score = 32.3 bits (72), Expect = 1.3 Identities = 18/53 (33%), Positives = 33/53 (62%), Gaps = 1/53 (1%) Frame = -2 Query: 408 KSTTEITLIKTNGICILTSSTSTIKSWPTQP-PSIKT*PPETCIRSTIVSSKP 253 K TT++ + + T++ +T+K+ P++ P + T PP T + STIV++KP Sbjct: 97 KQTTDVECVPL--VKPTTAAPTTLKTTPSKTTPIVTTAPPSTPVPSTIVTNKP 147
>sp|P10470|COAT_PLRV Coat protein Length = 208 Score = 32.0 bits (71), Expect = 1.8 Identities = 22/62 (35%), Positives = 29/62 (46%) Frame = +1 Query: 181 GGIQKPRASNVRSLRGRLNQMSSNRLTANNSAPNTSFRGSSFNRRGLSRPGFNRGGRGGQ 360 GG+Q+PR +SLR R N++ + + P R NRR R G R GRG Sbjct: 12 GGVQQPRRRRRQSLRRRANRVQPVVMVTASGQPRRRRRRRGGNRRS-RRTGVPR-GRGSS 69 Query: 361 NT 366 T Sbjct: 70 ET 71
>sp|P17522|COAT_PLRV1 Coat protein Length = 208 Score = 30.8 bits (68), Expect = 3.9 Identities = 22/62 (35%), Positives = 28/62 (45%) Frame = +1 Query: 181 GGIQKPRASNVRSLRGRLNQMSSNRLTANNSAPNTSFRGSSFNRRGLSRPGFNRGGRGGQ 360 GG+Q+PR +SLR R N++ + P R NRR R G R GRG Sbjct: 12 GGVQQPRMRRRQSLRRRANRVQPVVMVTAPGQPRRRRRRRGGNRRS-RRTGVPR-GRGSS 69 Query: 361 NT 366 T Sbjct: 70 ET 71
>sp|P11624|COAT_PLRVW Coat protein Length = 208 Score = 30.8 bits (68), Expect = 3.9 Identities = 22/62 (35%), Positives = 28/62 (45%) Frame = +1 Query: 181 GGIQKPRASNVRSLRGRLNQMSSNRLTANNSAPNTSFRGSSFNRRGLSRPGFNRGGRGGQ 360 GG+Q+PR +SLR R N++ + P R NRR R G R GRG Sbjct: 12 GGVQQPRRRRRQSLRRRANRVQPVVMVTAPGQPRRRRRRRGGNRRS-RRTGVPR-GRGSS 69 Query: 361 NT 366 T Sbjct: 70 ET 71
>sp|P17521|COAT_PLRVR Coat protein Length = 208 Score = 30.8 bits (68), Expect = 3.9 Identities = 22/62 (35%), Positives = 28/62 (45%) Frame = +1 Query: 181 GGIQKPRASNVRSLRGRLNQMSSNRLTANNSAPNTSFRGSSFNRRGLSRPGFNRGGRGGQ 360 GG+Q+PR +SLR R N++ + P R NRR R G R GRG Sbjct: 12 GGVQQPRRRRRQSLRRRANRVQPVVMVTAPGQPRRRRRRRGGNRRS-RRTGVPR-GRGSS 69 Query: 361 NT 366 T Sbjct: 70 ET 71
>sp|Q22053|FBRL_CAEEL Fibrillarin Length = 352 Score = 30.0 bits (66), Expect = 6.7 Identities = 15/31 (48%), Positives = 15/31 (48%) Frame = +1 Query: 265 NNSAPNTSFRGSSFNRRGLSRPGFNRGGRGG 357 N FRG RG SR GF GGRGG Sbjct: 7 NRGGGGGGFRGGRGGDRGGSRGGFGGGGRGG 37
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,461,335
Number of Sequences: 369166
Number of extensions: 959559
Number of successful extensions: 2674
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2414
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2651
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6582889600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Cluster detail
