Planaria EST Database


DrC_00904

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00904
         (736 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P14349|GAG_FOAMV  Gag polyprotein (Core polyprotein) [Con...    33   0.60 
sp|P54717|GLVR_BACSU  HTH-type transcriptional regulator glv...    33   0.60 
sp|P50109|PSP2_YEAST  Protein PSP2 (Mitochondrial regulator ...    32   1.3  
sp|Q95UE8|PE55_LUCCU  Peritrophin-55 precursor                     32   1.3  
sp|P10470|COAT_PLRV  Coat protein                                  32   1.8  
sp|P17522|COAT_PLRV1  Coat protein                                 31   3.9  
sp|P11624|COAT_PLRVW  Coat protein                                 31   3.9  
sp|P17521|COAT_PLRVR  Coat protein                                 31   3.9  
sp|Q22053|FBRL_CAEEL  Fibrillarin                                  30   6.7  
>sp|P14349|GAG_FOAMV Gag polyprotein (Core polyprotein) [Contains: Protease ]
          Length = 811

 Score = 33.5 bits (75), Expect = 0.60
 Identities = 26/93 (27%), Positives = 36/93 (38%), Gaps = 4/93 (4%)
 Frame = +1

Query: 112 TLNERFSRLNQK----KPQSFTPPIKRGGIQKPRASNVRSLRGRLNQMSSNRLTANNSAP 279
           T N+    LNQ     +P+++ P    GG  +    N  +   R +   S         P
Sbjct: 524 TQNQNQDNLNQGGYNLRPRTYQPQRYGGGRGRRWNDNTNNQESRPSDQGSQ-----TPRP 578

Query: 280 NTSFRGSSFNRRGLSRPGFNRGGRGGQNTNSIS 378
           N +  G   N+    RP   RGGRG  N N  S
Sbjct: 579 NQAGSGVRGNQSQTPRPAAGRGGRGNHNRNQRS 611
>sp|P54717|GLVR_BACSU HTH-type transcriptional regulator glvR (Glv operon regulatory
           protein)
          Length = 254

 Score = 33.5 bits (75), Expect = 0.60
 Identities = 16/49 (32%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
 Frame = -2

Query: 696 RIIINIFLPQFKY*FLI-DSSLINLLKKTFQVNIIYIVIKTILQTPKAV 553
           R +  +F+P+ +Y  LI D++  NL++  F+VN ++I+I    +TP+ +
Sbjct: 130 RDLQRMFIPRHRYLILIEDTNEFNLMRDDFKVNDLFIIISLSGETPELI 178
>sp|P50109|PSP2_YEAST Protein PSP2 (Mitochondrial regulator of splicing 15)
          Length = 578

 Score = 32.3 bits (72), Expect = 1.3
 Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
 Frame = +1

Query: 229 RLNQMSSNRLTANNSAPNTSFRGSSFNRRGLSRPGF-----NRGGRGGQNTNSISFNQSN 393
           R + MS  +   N++  N +FRGS+  R G +   +     NRG RGG    S S+N +N
Sbjct: 383 REHSMSRTKYNGNHNNNNGNFRGSNRYRGGPNGSSYKGGHNNRGNRGGYRGGS-SYNNNN 441

 Score = 30.8 bits (68), Expect = 3.9
 Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
 Frame = +1

Query: 244 SSNRLTANNSAPNTSFRGSSFNR-RGLSRPGFN-RGGRGGQNTNSISFNQSN 393
           ++ R   N+S  N   RG  F R RG  R  +N RG RGG+ ++    N +N
Sbjct: 520 NNGRGNYNSSGMNGGSRGRGFGRGRGFGRGAYNNRGSRGGRGSSGNYSNYNN 571
>sp|Q95UE8|PE55_LUCCU Peritrophin-55 precursor
          Length = 220

 Score = 32.3 bits (72), Expect = 1.3
 Identities = 18/53 (33%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
 Frame = -2

Query: 408 KSTTEITLIKTNGICILTSSTSTIKSWPTQP-PSIKT*PPETCIRSTIVSSKP 253
           K TT++  +    +   T++ +T+K+ P++  P + T PP T + STIV++KP
Sbjct: 97  KQTTDVECVPL--VKPTTAAPTTLKTTPSKTTPIVTTAPPSTPVPSTIVTNKP 147
>sp|P10470|COAT_PLRV Coat protein
          Length = 208

 Score = 32.0 bits (71), Expect = 1.8
 Identities = 22/62 (35%), Positives = 29/62 (46%)
 Frame = +1

Query: 181 GGIQKPRASNVRSLRGRLNQMSSNRLTANNSAPNTSFRGSSFNRRGLSRPGFNRGGRGGQ 360
           GG+Q+PR    +SLR R N++    +   +  P    R    NRR   R G  R GRG  
Sbjct: 12  GGVQQPRRRRRQSLRRRANRVQPVVMVTASGQPRRRRRRRGGNRRS-RRTGVPR-GRGSS 69

Query: 361 NT 366
            T
Sbjct: 70  ET 71
>sp|P17522|COAT_PLRV1 Coat protein
          Length = 208

 Score = 30.8 bits (68), Expect = 3.9
 Identities = 22/62 (35%), Positives = 28/62 (45%)
 Frame = +1

Query: 181 GGIQKPRASNVRSLRGRLNQMSSNRLTANNSAPNTSFRGSSFNRRGLSRPGFNRGGRGGQ 360
           GG+Q+PR    +SLR R N++    +      P    R    NRR   R G  R GRG  
Sbjct: 12  GGVQQPRMRRRQSLRRRANRVQPVVMVTAPGQPRRRRRRRGGNRRS-RRTGVPR-GRGSS 69

Query: 361 NT 366
            T
Sbjct: 70  ET 71
>sp|P11624|COAT_PLRVW Coat protein
          Length = 208

 Score = 30.8 bits (68), Expect = 3.9
 Identities = 22/62 (35%), Positives = 28/62 (45%)
 Frame = +1

Query: 181 GGIQKPRASNVRSLRGRLNQMSSNRLTANNSAPNTSFRGSSFNRRGLSRPGFNRGGRGGQ 360
           GG+Q+PR    +SLR R N++    +      P    R    NRR   R G  R GRG  
Sbjct: 12  GGVQQPRRRRRQSLRRRANRVQPVVMVTAPGQPRRRRRRRGGNRRS-RRTGVPR-GRGSS 69

Query: 361 NT 366
            T
Sbjct: 70  ET 71
>sp|P17521|COAT_PLRVR Coat protein
          Length = 208

 Score = 30.8 bits (68), Expect = 3.9
 Identities = 22/62 (35%), Positives = 28/62 (45%)
 Frame = +1

Query: 181 GGIQKPRASNVRSLRGRLNQMSSNRLTANNSAPNTSFRGSSFNRRGLSRPGFNRGGRGGQ 360
           GG+Q+PR    +SLR R N++    +      P    R    NRR   R G  R GRG  
Sbjct: 12  GGVQQPRRRRRQSLRRRANRVQPVVMVTAPGQPRRRRRRRGGNRRS-RRTGVPR-GRGSS 69

Query: 361 NT 366
            T
Sbjct: 70  ET 71
>sp|Q22053|FBRL_CAEEL Fibrillarin
          Length = 352

 Score = 30.0 bits (66), Expect = 6.7
 Identities = 15/31 (48%), Positives = 15/31 (48%)
 Frame = +1

Query: 265 NNSAPNTSFRGSSFNRRGLSRPGFNRGGRGG 357
           N       FRG     RG SR GF  GGRGG
Sbjct: 7   NRGGGGGGFRGGRGGDRGGSRGGFGGGGRGG 37
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,461,335
Number of Sequences: 369166
Number of extensions: 959559
Number of successful extensions: 2674
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2414
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2651
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6582889600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00904

  1. Dr_sW_012_P16
  2. Dr_sW_022_M02
  3. Dr_sW_005_F09
  4. Dr_sW_018_L24
  5. Dr_sW_022_E23
  6. Dr_sW_012_B02
  7. Dr_sW_018_G10
  8. Dr_sW_006_F06
  9. Dr_sW_020_M16
  10. Dr_sW_006_K03
  11. Dr_sW_025_C14
  12. Dr_sW_004_B09
  13. Dr_sW_015_J06