Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_015_J06
(530 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P50109|PSP2_YEAST Protein PSP2 (Mitochondrial regulator ... 32 0.73
sp|Q95UE8|PE55_LUCCU Peritrophin-55 precursor 32 0.73
sp|Q9BX82|ZN471_HUMAN Zinc finger protein 471 (EZFIT-relate... 30 2.8
sp|Q22053|FBRL_CAEEL Fibrillarin 30 3.6
sp|Q09550|YQU3_CAEEL Hypothetical protein F26C11.3 precursor 29 6.2
sp|Q5JFR1|PDXS_PYRKO Pyridoxal biosynthesis lyase pdxS 29 8.1
sp|O66961|PFDA_AQUAE Putative prefoldin alpha subunit 29 8.1
>sp|P50109|PSP2_YEAST Protein PSP2 (Mitochondrial regulator of splicing 15)
Length = 578
Score = 32.3 bits (72), Expect = 0.73
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
Frame = +1
Query: 25 RLNQMSSNRLTANNSAPNTSFRGSSFNRRGLSRPGF-----NRGGRGGQNTNSISFNQSN 189
R + MS + N++ N +FRGS+ R G + + NRG RGG S S+N +N
Sbjct: 383 REHSMSRTKYNGNHNNNNGNFRGSNRYRGGPNGSSYKGGHNNRGNRGGYRGGS-SYNNNN 441
Score = 30.8 bits (68), Expect = 2.1
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = +1
Query: 40 SSNRLTANNSAPNTSFRGSSFNR-RGLSRPGFN-RGGRGGQNTNSISFNQSN 189
++ R N+S N RG F R RG R +N RG RGG+ ++ N +N
Sbjct: 520 NNGRGNYNSSGMNGGSRGRGFGRGRGFGRGAYNNRGSRGGRGSSGNYSNYNN 571
>sp|Q95UE8|PE55_LUCCU Peritrophin-55 precursor
Length = 220
Score = 32.3 bits (72), Expect = 0.73
Identities = 18/53 (33%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Frame = -3
Query: 204 KSTTEITLIKTNGICILTSSTSTIKSWPTQP-PSIKT*PPETCIRSTIVSSKP 49
K TT++ + + T++ +T+K+ P++ P + T PP T + STIV++KP
Sbjct: 97 KQTTDVECVPL--VKPTTAAPTTLKTTPSKTTPIVTTAPPSTPVPSTIVTNKP 147
>sp|Q9BX82|ZN471_HUMAN Zinc finger protein 471 (EZFIT-related protein 1)
Length = 626
Score = 30.4 bits (67), Expect = 2.8
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = -2
Query: 424 KFRK*ILNRKLFNCN*NDFTNTKSSLLSITFILHAYMHP 308
K +K + +KLF CN D T T SS L++ F +H P
Sbjct: 195 KHKKVYVGKKLFKCNECDKTFTHSSSLTVHFRIHTGEKP 233
>sp|Q22053|FBRL_CAEEL Fibrillarin
Length = 352
Score = 30.0 bits (66), Expect = 3.6
Identities = 15/31 (48%), Positives = 15/31 (48%)
Frame = +1
Query: 61 NNSAPNTSFRGSSFNRRGLSRPGFNRGGRGG 153
N FRG RG SR GF GGRGG
Sbjct: 7 NRGGGGGGFRGGRGGDRGGSRGGFGGGGRGG 37
>sp|Q09550|YQU3_CAEEL Hypothetical protein F26C11.3 precursor
Length = 1317
Score = 29.3 bits (64), Expect = 6.2
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = -3
Query: 162 CILTSSTSTIKSWPTQPPSIKT*PPETCIRST 67
C TSSTS I + PT P S K P T + +T
Sbjct: 829 CKKTSSTSKISTTPTSPTSSKPTPTSTSMTTT 860
>sp|Q5JFR1|PDXS_PYRKO Pyridoxal biosynthesis lyase pdxS
Length = 335
Score = 28.9 bits (63), Expect = 8.1
Identities = 19/55 (34%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Frame = +2
Query: 353 AFGVCKIVLITIEQ-FSIQYLFSE-FLHPNINQKSIFKLWQKNIDNYPIYTVFCY 511
A G+ +I +T +Q +++ F+E +L ++N K I L Q+ +DN PIY + Y
Sbjct: 174 AEGIRQIQAMTDDQVYAVAEKFAEPYLRLSLNVKEIAGLPQRVLDNEPIYGHYTY 228
>sp|O66961|PFDA_AQUAE Putative prefoldin alpha subunit
Length = 149
Score = 28.9 bits (63), Expect = 8.1
Identities = 12/20 (60%), Positives = 16/20 (80%)
Frame = +1
Query: 262 VKKTPEQKKEELDAELDAYM 321
V+KTPEQK +EL+ +L YM
Sbjct: 8 VQKTPEQKMDELNRQLRGYM 27
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,731,883
Number of Sequences: 369166
Number of extensions: 765967
Number of successful extensions: 2177
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2018
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2163
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3600891075
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)