Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_005_F09
(637 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P14349|GAG_FOAMV Gag polyprotein (Core polyprotein) [Con... 33 0.47
sp|P50109|PSP2_YEAST Protein PSP2 (Mitochondrial regulator ... 32 1.0
sp|Q95UE8|PE55_LUCCU Peritrophin-55 precursor 32 1.0
sp|Q9Y3Y2|CA077_HUMAN Protein C1orf77 32 1.4
sp|P10470|COAT_PLRV Coat protein 32 1.4
sp|Q9CY57|CA077_MOUSE Protein C1orf77 homolog 32 1.4
sp|P17522|COAT_PLRV1 Coat protein 31 3.0
sp|P11624|COAT_PLRVW Coat protein 31 3.0
sp|P17521|COAT_PLRVR Coat protein 31 3.0
sp|Q22053|FBRL_CAEEL Fibrillarin 30 5.2
>sp|P14349|GAG_FOAMV Gag polyprotein (Core polyprotein) [Contains: Protease ]
Length = 811
Score = 33.5 bits (75), Expect = 0.47
Identities = 26/93 (27%), Positives = 36/93 (38%), Gaps = 4/93 (4%)
Frame = +3
Query: 108 TLNERFSRLNQK----KPQSFTPPIKRGGIQKPRASNVRSLRGRLNQMSSNRLTANNSAP 275
T N+ LNQ +P+++ P GG + N + R + S P
Sbjct: 524 TQNQNQDNLNQGGYNLRPRTYQPQRYGGGRGRRWNDNTNNQESRPSDQGSQ-----TPRP 578
Query: 276 NTSFRGSSFNRRGLSRPGFNRGGRGGQNTNSIS 374
N + G N+ RP RGGRG N N S
Sbjct: 579 NQAGSGVRGNQSQTPRPAAGRGGRGNHNRNQRS 611
>sp|P50109|PSP2_YEAST Protein PSP2 (Mitochondrial regulator of splicing 15)
Length = 578
Score = 32.3 bits (72), Expect = 1.0
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
Frame = +3
Query: 225 RLNQMSSNRLTANNSAPNTSFRGSSFNRRGLSRPGF-----NRGGRGGQNTNSISFNQSN 389
R + MS + N++ N +FRGS+ R G + + NRG RGG S S+N +N
Sbjct: 383 REHSMSRTKYNGNHNNNNGNFRGSNRYRGGPNGSSYKGGHNNRGNRGGYRGGS-SYNNNN 441
Score = 30.8 bits (68), Expect = 3.0
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = +3
Query: 240 SSNRLTANNSAPNTSFRGSSFNR-RGLSRPGFN-RGGRGGQNTNSISFNQSN 389
++ R N+S N RG F R RG R +N RG RGG+ ++ N +N
Sbjct: 520 NNGRGNYNSSGMNGGSRGRGFGRGRGFGRGAYNNRGSRGGRGSSGNYSNYNN 571
>sp|Q95UE8|PE55_LUCCU Peritrophin-55 precursor
Length = 220
Score = 32.3 bits (72), Expect = 1.0
Identities = 18/53 (33%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Frame = -3
Query: 404 KSTTEITLIKTNGICILTSSTSTIKSWPTQP-PSIKT*PPETCIRSTIVSSKP 249
K TT++ + + T++ +T+K+ P++ P + T PP T + STIV++KP
Sbjct: 97 KQTTDVECVPL--VKPTTAAPTTLKTTPSKTTPIVTTAPPSTPVPSTIVTNKP 147
>sp|Q9Y3Y2|CA077_HUMAN Protein C1orf77
Length = 248
Score = 32.0 bits (71), Expect = 1.4
Identities = 33/125 (26%), Positives = 44/125 (35%), Gaps = 7/125 (5%)
Frame = +3
Query: 168 IKRGGIQKPRASNVRSLRGRLNQMSSNRLTANNS-APNTSFRGSSFNRRG------LSRP 326
+ RGG++ RA+ LRG ++ N L + AP R RG L R
Sbjct: 112 LPRGGLRGGRATRTL-LRGGMSLRGQNLLRGGRAVAPRMGLRRGGVRGRGGPGRGGLGRG 170
Query: 327 GFNRGGRGGQNTNSISFNQSNXXXXXXXXXXXXXXXXXXXXMSSPVKKTPEQKKEELDAE 506
RGG GG+ I + P KE+LD +
Sbjct: 171 AMGRGGIGGRGRGMIGRGRGG-----------FGGRGRGRGRGRGALARPVLTKEQLDNQ 219
Query: 507 LDAYM 521
LDAYM
Sbjct: 220 LDAYM 224
Score = 29.3 bits (64), Expect = 8.8
Identities = 32/118 (27%), Positives = 49/118 (41%), Gaps = 23/118 (19%)
Frame = +3
Query: 87 LRSSTTMTLNERFSRLNQKKPQSFTPPIKRGGIQ-------------------KPRASNV 209
L+S+T M+LNERF+ N K + TP R +Q +P
Sbjct: 11 LKSTTKMSLNERFT--NMLKNKQPTPVNIRASMQQQQQLASARNRRLAQQMENRPSVQAA 68
Query: 210 RSLRGRLNQ-MSSNRLTANNSAPNTSFRGSSFNRRGLS--RPGFNRGG-RGGQNTNSI 371
L+ L Q + + + A P + + RGL + G RGG RGG+ T ++
Sbjct: 69 LKLKQSLKQRLGKSNIQARLGRPIGALARGAIGGRGLPIIQRGLPRGGLRGGRATRTL 126
>sp|P10470|COAT_PLRV Coat protein
Length = 208
Score = 32.0 bits (71), Expect = 1.4
Identities = 22/62 (35%), Positives = 29/62 (46%)
Frame = +3
Query: 177 GGIQKPRASNVRSLRGRLNQMSSNRLTANNSAPNTSFRGSSFNRRGLSRPGFNRGGRGGQ 356
GG+Q+PR +SLR R N++ + + P R NRR R G R GRG
Sbjct: 12 GGVQQPRRRRRQSLRRRANRVQPVVMVTASGQPRRRRRRRGGNRRS-RRTGVPR-GRGSS 69
Query: 357 NT 362
T
Sbjct: 70 ET 71
>sp|Q9CY57|CA077_MOUSE Protein C1orf77 homolog
Length = 249
Score = 32.0 bits (71), Expect = 1.4
Identities = 33/125 (26%), Positives = 44/125 (35%), Gaps = 7/125 (5%)
Frame = +3
Query: 168 IKRGGIQKPRASNVRSLRGRLNQMSSNRLTANNS-APNTSFRGSSFNRRG------LSRP 326
+ RGG++ RA+ LRG ++ N L + AP R RG L R
Sbjct: 113 LPRGGLRGGRATRTL-LRGGMSLRGQNLLRGGRAVAPRMGLRRGGVRGRGGPGRGGLGRG 171
Query: 327 GFNRGGRGGQNTNSISFNQSNXXXXXXXXXXXXXXXXXXXXMSSPVKKTPEQKKEELDAE 506
RGG GG+ I + P KE+LD +
Sbjct: 172 AMGRGGIGGRGRGMIGRGRGG-----------FGGRGRGRGRGRGALTRPVLTKEQLDNQ 220
Query: 507 LDAYM 521
LDAYM
Sbjct: 221 LDAYM 225
>sp|P17522|COAT_PLRV1 Coat protein
Length = 208
Score = 30.8 bits (68), Expect = 3.0
Identities = 22/62 (35%), Positives = 28/62 (45%)
Frame = +3
Query: 177 GGIQKPRASNVRSLRGRLNQMSSNRLTANNSAPNTSFRGSSFNRRGLSRPGFNRGGRGGQ 356
GG+Q+PR +SLR R N++ + P R NRR R G R GRG
Sbjct: 12 GGVQQPRMRRRQSLRRRANRVQPVVMVTAPGQPRRRRRRRGGNRRS-RRTGVPR-GRGSS 69
Query: 357 NT 362
T
Sbjct: 70 ET 71
>sp|P11624|COAT_PLRVW Coat protein
Length = 208
Score = 30.8 bits (68), Expect = 3.0
Identities = 22/62 (35%), Positives = 28/62 (45%)
Frame = +3
Query: 177 GGIQKPRASNVRSLRGRLNQMSSNRLTANNSAPNTSFRGSSFNRRGLSRPGFNRGGRGGQ 356
GG+Q+PR +SLR R N++ + P R NRR R G R GRG
Sbjct: 12 GGVQQPRRRRRQSLRRRANRVQPVVMVTAPGQPRRRRRRRGGNRRS-RRTGVPR-GRGSS 69
Query: 357 NT 362
T
Sbjct: 70 ET 71
>sp|P17521|COAT_PLRVR Coat protein
Length = 208
Score = 30.8 bits (68), Expect = 3.0
Identities = 22/62 (35%), Positives = 28/62 (45%)
Frame = +3
Query: 177 GGIQKPRASNVRSLRGRLNQMSSNRLTANNSAPNTSFRGSSFNRRGLSRPGFNRGGRGGQ 356
GG+Q+PR +SLR R N++ + P R NRR R G R GRG
Sbjct: 12 GGVQQPRRRRRQSLRRRANRVQPVVMVTAPGQPRRRRRRRGGNRRS-RRTGVPR-GRGSS 69
Query: 357 NT 362
T
Sbjct: 70 ET 71
>sp|Q22053|FBRL_CAEEL Fibrillarin
Length = 352
Score = 30.0 bits (66), Expect = 5.2
Identities = 15/31 (48%), Positives = 15/31 (48%)
Frame = +3
Query: 261 NNSAPNTSFRGSSFNRRGLSRPGFNRGGRGG 353
N FRG RG SR GF GGRGG
Sbjct: 7 NRGGGGGGFRGGRGGDRGGSRGGFGGGGRGG 37
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,717,797
Number of Sequences: 369166
Number of extensions: 788450
Number of successful extensions: 2438
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2415
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5121172350
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)