Planaria EST Database


DrC_00888

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00888
         (272 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P97675|ENPP3_RAT  Ectonucleotide pyrophosphatase/phosphod...    35   0.041
sp|Q8S4P5|EZ2_MAIZE  Polycomb protein EZ2 (Enhancer of zeste...    30   1.3  
sp|P91758|CRNF_LYMST  Cysteine-rich neurotrophic factor prec...    30   1.7  
sp|Q80T14|FRAS1_MOUSE  Extracellular matrix protein FRAS1 pr...    30   2.3  
sp|P82631|SCRC_ARATH  Hypothetical protein SCRL12 precursor        28   5.1  
sp|P05106|ITB3_HUMAN  Integrin beta-3 precursor (Platelet me...    28   6.6  
sp|P14585|LIN12_CAEEL  Lin-12 protein precursor                    28   6.6  
sp|P82773|LC59_ARATH  Putative low-molecular-weight cysteine...    28   8.6  
>sp|P97675|ENPP3_RAT Ectonucleotide pyrophosphatase/phosphodiesterase 3 (E-NPP 3)
           (Phosphodiesterase I/nucleotide pyrophosphatase 3)
           (Phosphodiesterase I beta) (PD-Ibeta) (RB13-6 antigen)
           (B10) [Includes: Alkaline phosphodiesterase I ;
           Nucleotide pyrophosphatase (NPPase)]
          Length = 875

 Score = 35.4 bits (80), Expect = 0.041
 Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 13/89 (14%)
 Frame = +1

Query: 1   IRHEEIFCSVFVIVLMIVNCEV-------YAKETVAICRAKCWD------EGYACDKACT 141
           ++  +I C+V + +L+IV+  +         +E +  CR KC+D      EG  CD  CT
Sbjct: 18  LKRYKILCAVLLALLVIVSLGLGLGLGLRKPEEHIGSCRKKCFDSSHRGLEGCRCDSGCT 77

Query: 142 AQKDPSSKDHMKCVHDCESGLKTCFAAKC 228
            + D        CV   +  + TC + +C
Sbjct: 78  DRGDCCWDFEDTCVKSTQ--IWTCNSFRC 104
>sp|Q8S4P5|EZ2_MAIZE Polycomb protein EZ2 (Enhancer of zeste protein 2)
          Length = 894

 Score = 30.4 bits (67), Expect = 1.3
 Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 6/50 (12%)
 Frame = +1

Query: 103 CWDEGYACDKACTAQKDPSSKDHMKCVH----DCESGLKTCFAA--KCDP 234
           C D+G  C+K C   K  S K+  +  H     C S    CFAA  +CDP
Sbjct: 661 CADKGTCCEKYCGCSK--SCKNKFRGCHCAKSQCRSRQCPCFAASRECDP 708
>sp|P91758|CRNF_LYMST Cysteine-rich neurotrophic factor precursor (CRNF)
          Length = 121

 Score = 30.0 bits (66), Expect = 1.7
 Identities = 17/50 (34%), Positives = 20/50 (40%)
 Frame = +1

Query: 67  YAKETVAICRAKCWDEGYACDKACTAQKDPSSKDHMKCVHDCESGLKTCF 216
           +  ETVA C   CWD G  C   C    D  + D    V +      TCF
Sbjct: 55  FTNETVA-CMQPCWDLGIPCRTQCYKVYDQCTSDCPYTVPNPYECFTTCF 103
>sp|Q80T14|FRAS1_MOUSE Extracellular matrix protein FRAS1 precursor
          Length = 4010

 Score = 29.6 bits (65), Expect = 2.3
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +1

Query: 175 KCVHDCESGLKTCFAAKCDPM 237
           KCV  C +GL  CFAA+C P+
Sbjct: 178 KCV--CRNGLTQCFAAQCQPL 196
>sp|P82631|SCRC_ARATH Hypothetical protein SCRL12 precursor
          Length = 92

 Score = 28.5 bits (62), Expect = 5.1
 Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
 Frame = +1

Query: 16  IFCSVFVIVLMIVNCEVYAKETVAICRAKCWDEGYAC----DKACTAQKDPSSKDHMKCV 183
           +FC +   VL I   EV A+  V +C+   ++    C    +K C  + D     + +C 
Sbjct: 9   VFCILMFFVLNIFTVEVKAQRLVPLCKTIGYENPGKCPADGNKFCRRKLDDRYVKYKRC- 67

Query: 184 HDCE 195
            DC+
Sbjct: 68  -DCQ 70
>sp|P05106|ITB3_HUMAN Integrin beta-3 precursor (Platelet membrane glycoprotein IIIa)
           (GPIIIa) (CD61 antigen)
          Length = 788

 Score = 28.1 bits (61), Expect = 6.6
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
 Frame = +1

Query: 118 YACDKACTAQKDPSSKDHMKCVHDCESGLKT--CFAAKCDP 234
           + CD AC AQ +P+S       H C +G  T  C   +C P
Sbjct: 457 FDCDCACQAQAEPNS-------HRCNNGNGTFECGVCRCGP 490
>sp|P14585|LIN12_CAEEL Lin-12 protein precursor
          Length = 1429

 Score = 28.1 bits (61), Expect = 6.6
 Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
 Frame = +1

Query: 64  VYAKETVAICRAKCWDEGYA---CDKACTAQKDPSSKDHMKCVHDCESGLKTCFAAKCD 231
           V   +T   CR    DEG+    C++ C   K  + +   KCV D +  ++TC    CD
Sbjct: 40  VNGTQTSYWCRC---DEGFGGEYCEQQCDVSKCGADE---KCVFDKDYRMETCVCKDCD 92
>sp|P82773|LC59_ARATH Putative low-molecular-weight cysteine-rich protein LCR59 precursor
          Length = 129

 Score = 27.7 bits (60), Expect = 8.6
 Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 11/74 (14%)
 Frame = +1

Query: 10  EEIFCSVFVIVLMIVNCEVYAKETVAICRAKCWDEGYA--CDKACTAQKDPSSKDH---- 171
           E +   VF++ L+I+   V  +     C       GY   CD+ C A+  PSS+      
Sbjct: 2   ETVTSLVFIVNLLIIFTSVVNQARGDTCIDGL---GYCNNCDERCKAKHGPSSESSCDRS 58

Query: 172 -----MKCVHDCES 198
                 KC ++CES
Sbjct: 59  VGVPLCKCYYECES 72
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,218,702
Number of Sequences: 369166
Number of extensions: 454369
Number of successful extensions: 1338
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1300
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1338
length of database: 68,354,980
effective HSP length: 60
effective length of database: 57,270,880
effective search space used: 1718126400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00888

  1. Dr_sW_022_G07
  2. Dr_sW_022_F11