Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_022_F11
(252 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P97675|ENPP3_RAT Ectonucleotide pyrophosphatase/phosphod... 33 0.26
sp|Q8S4P5|EZ2_MAIZE Polycomb protein EZ2 (Enhancer of zeste... 30 1.3
sp|P91758|CRNF_LYMST Cysteine-rich neurotrophic factor prec... 30 1.7
sp|Q80T14|FRAS1_MOUSE Extracellular matrix protein FRAS1 pr... 30 2.2
sp|P05106|ITB3_HUMAN Integrin beta-3 precursor (Platelet me... 28 6.5
sp|P14585|LIN12_CAEEL Lin-12 protein precursor 28 6.5
>sp|P97675|ENPP3_RAT Ectonucleotide pyrophosphatase/phosphodiesterase 3 (E-NPP 3)
(Phosphodiesterase I/nucleotide pyrophosphatase 3)
(Phosphodiesterase I beta) (PD-Ibeta) (RB13-6 antigen)
(B10) [Includes: Alkaline phosphodiesterase I ;
Nucleotide pyrophosphatase (NPPase)]
Length = 875
Score = 32.7 bits (73), Expect = 0.26
Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 13/82 (15%)
Frame = +2
Query: 2 CSVFVIVLMIVNCEV-------YAKETVAICRAKCWD------EGYACDKACTAQKDPSS 142
C+V + +L+IV+ + +E + CR KC+D EG CD CT + D
Sbjct: 25 CAVLLALLVIVSLGLGLGLGLRKPEEHIGSCRKKCFDSSHRGLEGCRCDSGCTDRGDCCW 84
Query: 143 KDHMKCVHDCESGLKTCFAAKC 208
CV + + TC + +C
Sbjct: 85 DFEDTCVKSTQ--IWTCNSFRC 104
>sp|Q8S4P5|EZ2_MAIZE Polycomb protein EZ2 (Enhancer of zeste protein 2)
Length = 894
Score = 30.4 bits (67), Expect = 1.3
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 6/50 (12%)
Frame = +2
Query: 83 CWDEGYACDKACTAQKDPSSKDHMKCVH----DCESGLKTCFAA--KCDP 214
C D+G C+K C K S K+ + H C S CFAA +CDP
Sbjct: 661 CADKGTCCEKYCGCSK--SCKNKFRGCHCAKSQCRSRQCPCFAASRECDP 708
>sp|P91758|CRNF_LYMST Cysteine-rich neurotrophic factor precursor (CRNF)
Length = 121
Score = 30.0 bits (66), Expect = 1.7
Identities = 17/50 (34%), Positives = 20/50 (40%)
Frame = +2
Query: 47 YAKETVAICRAKCWDEGYACDKACTAQKDPSSKDHMKCVHDCESGLKTCF 196
+ ETVA C CWD G C C D + D V + TCF
Sbjct: 55 FTNETVA-CMQPCWDLGIPCRTQCYKVYDQCTSDCPYTVPNPYECFTTCF 103
>sp|Q80T14|FRAS1_MOUSE Extracellular matrix protein FRAS1 precursor
Length = 4010
Score = 29.6 bits (65), Expect = 2.2
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +2
Query: 155 KCVHDCESGLKTCFAAKCDPM 217
KCV C +GL CFAA+C P+
Sbjct: 178 KCV--CRNGLTQCFAAQCQPL 196
>sp|P05106|ITB3_HUMAN Integrin beta-3 precursor (Platelet membrane glycoprotein IIIa)
(GPIIIa) (CD61 antigen)
Length = 788
Score = 28.1 bits (61), Expect = 6.5
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Frame = +2
Query: 98 YACDKACTAQKDPSSKDHMKCVHDCESGLKT--CFAAKCDP 214
+ CD AC AQ +P+S H C +G T C +C P
Sbjct: 457 FDCDCACQAQAEPNS-------HRCNNGNGTFECGVCRCGP 490
>sp|P14585|LIN12_CAEEL Lin-12 protein precursor
Length = 1429
Score = 28.1 bits (61), Expect = 6.5
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Frame = +2
Query: 44 VYAKETVAICRAKCWDEGYA---CDKACTAQKDPSSKDHMKCVHDCESGLKTCFAAKCD 211
V +T CR DEG+ C++ C K + + KCV D + ++TC CD
Sbjct: 40 VNGTQTSYWCRC---DEGFGGEYCEQQCDVSKCGADE---KCVFDKDYRMETCVCKDCD 92
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,193,206
Number of Sequences: 369166
Number of extensions: 419609
Number of successful extensions: 1209
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1209
length of database: 68,354,980
effective HSP length: 54
effective length of database: 58,379,290
effective search space used: 1692999410
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)