Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_022_G07
(272 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P97675|ENPP3_RAT Ectonucleotide pyrophosphatase/phosphod... 35 0.041
sp|Q8S4P5|EZ2_MAIZE Polycomb protein EZ2 (Enhancer of zeste... 30 1.3
sp|P91758|CRNF_LYMST Cysteine-rich neurotrophic factor prec... 30 1.7
sp|Q80T14|FRAS1_MOUSE Extracellular matrix protein FRAS1 pr... 30 2.3
sp|P82631|SCRC_ARATH Hypothetical protein SCRL12 precursor 28 5.1
sp|P05106|ITB3_HUMAN Integrin beta-3 precursor (Platelet me... 28 6.6
sp|P14585|LIN12_CAEEL Lin-12 protein precursor 28 6.6
sp|P82773|LC59_ARATH Putative low-molecular-weight cysteine... 28 8.6
>sp|P97675|ENPP3_RAT Ectonucleotide pyrophosphatase/phosphodiesterase 3 (E-NPP 3)
(Phosphodiesterase I/nucleotide pyrophosphatase 3)
(Phosphodiesterase I beta) (PD-Ibeta) (RB13-6 antigen)
(B10) [Includes: Alkaline phosphodiesterase I ;
Nucleotide pyrophosphatase (NPPase)]
Length = 875
Score = 35.4 bits (80), Expect = 0.041
Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 13/89 (14%)
Frame = +1
Query: 1 IRHEEIFCSVFVIVLMIVNCEV-------YAKETVAICRAKCWD------EGYACDKACT 141
++ +I C+V + +L+IV+ + +E + CR KC+D EG CD CT
Sbjct: 18 LKRYKILCAVLLALLVIVSLGLGLGLGLRKPEEHIGSCRKKCFDSSHRGLEGCRCDSGCT 77
Query: 142 AQKDPSSKDHMKCVHDCESGLKTCFAAKC 228
+ D CV + + TC + +C
Sbjct: 78 DRGDCCWDFEDTCVKSTQ--IWTCNSFRC 104
>sp|Q8S4P5|EZ2_MAIZE Polycomb protein EZ2 (Enhancer of zeste protein 2)
Length = 894
Score = 30.4 bits (67), Expect = 1.3
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 6/50 (12%)
Frame = +1
Query: 103 CWDEGYACDKACTAQKDPSSKDHMKCVH----DCESGLKTCFAA--KCDP 234
C D+G C+K C K S K+ + H C S CFAA +CDP
Sbjct: 661 CADKGTCCEKYCGCSK--SCKNKFRGCHCAKSQCRSRQCPCFAASRECDP 708
>sp|P91758|CRNF_LYMST Cysteine-rich neurotrophic factor precursor (CRNF)
Length = 121
Score = 30.0 bits (66), Expect = 1.7
Identities = 17/50 (34%), Positives = 20/50 (40%)
Frame = +1
Query: 67 YAKETVAICRAKCWDEGYACDKACTAQKDPSSKDHMKCVHDCESGLKTCF 216
+ ETVA C CWD G C C D + D V + TCF
Sbjct: 55 FTNETVA-CMQPCWDLGIPCRTQCYKVYDQCTSDCPYTVPNPYECFTTCF 103
>sp|Q80T14|FRAS1_MOUSE Extracellular matrix protein FRAS1 precursor
Length = 4010
Score = 29.6 bits (65), Expect = 2.3
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +1
Query: 175 KCVHDCESGLKTCFAAKCDPM 237
KCV C +GL CFAA+C P+
Sbjct: 178 KCV--CRNGLTQCFAAQCQPL 196
>sp|P82631|SCRC_ARATH Hypothetical protein SCRL12 precursor
Length = 92
Score = 28.5 bits (62), Expect = 5.1
Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
Frame = +1
Query: 16 IFCSVFVIVLMIVNCEVYAKETVAICRAKCWDEGYAC----DKACTAQKDPSSKDHMKCV 183
+FC + VL I EV A+ V +C+ ++ C +K C + D + +C
Sbjct: 9 VFCILMFFVLNIFTVEVKAQRLVPLCKTIGYENPGKCPADGNKFCRRKLDDRYVKYKRC- 67
Query: 184 HDCE 195
DC+
Sbjct: 68 -DCQ 70
>sp|P05106|ITB3_HUMAN Integrin beta-3 precursor (Platelet membrane glycoprotein IIIa)
(GPIIIa) (CD61 antigen)
Length = 788
Score = 28.1 bits (61), Expect = 6.6
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Frame = +1
Query: 118 YACDKACTAQKDPSSKDHMKCVHDCESGLKT--CFAAKCDP 234
+ CD AC AQ +P+S H C +G T C +C P
Sbjct: 457 FDCDCACQAQAEPNS-------HRCNNGNGTFECGVCRCGP 490
>sp|P14585|LIN12_CAEEL Lin-12 protein precursor
Length = 1429
Score = 28.1 bits (61), Expect = 6.6
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Frame = +1
Query: 64 VYAKETVAICRAKCWDEGYA---CDKACTAQKDPSSKDHMKCVHDCESGLKTCFAAKCD 231
V +T CR DEG+ C++ C K + + KCV D + ++TC CD
Sbjct: 40 VNGTQTSYWCRC---DEGFGGEYCEQQCDVSKCGADE---KCVFDKDYRMETCVCKDCD 92
>sp|P82773|LC59_ARATH Putative low-molecular-weight cysteine-rich protein LCR59 precursor
Length = 129
Score = 27.7 bits (60), Expect = 8.6
Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 11/74 (14%)
Frame = +1
Query: 10 EEIFCSVFVIVLMIVNCEVYAKETVAICRAKCWDEGYA--CDKACTAQKDPSSKDH---- 171
E + VF++ L+I+ V + C GY CD+ C A+ PSS+
Sbjct: 2 ETVTSLVFIVNLLIIFTSVVNQARGDTCIDGL---GYCNNCDERCKAKHGPSSESSCDRS 58
Query: 172 -----MKCVHDCES 198
KC ++CES
Sbjct: 59 VGVPLCKCYYECES 72
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,218,702
Number of Sequences: 369166
Number of extensions: 454369
Number of successful extensions: 1338
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1300
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1338
length of database: 68,354,980
effective HSP length: 60
effective length of database: 57,270,880
effective search space used: 1718126400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)