Planaria EST Database

DrC_00867

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00867
         (680 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P38962|TVP23_YEAST  TLG2-vesicle protein of 23 kDa              31   2.6  
sp|Q99JY9|ARP3_MOUSE  Actin-like protein 3 (Actin-related pr...    30   4.5  
sp|P61157|ARP3_BOVIN  Actin-like protein 3 (Actin-related pr...    30   4.5  
sp|O73723|ARP3_FUGRU  Actin-like protein 3 (Actin-related pr...    30   4.5  
sp|Q9W1N6|GR59E_DROME  Putative gustatory receptor 59e             30   7.6  
sp|O35103|OMD_MOUSE  Osteomodulin precursor (Osteoadherin) (...    30   7.6  

>sp|P38962|TVP23_YEAST TLG2-vesicle protein of 23 kDa
          Length = 199

 Score = 31.2 bits (69), Expect = 2.6
 Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 6/59 (10%)
 Frame = +1

Query: 448 VLLNFNSLNIVVCVECYILSNFIHRKSPDFVNLV------FRLTLNVCFMKLLNVTYWY 606
           +LL+F+     V +  YI+ +     +P F+ +V      F LT N+   KL+ + +WY
Sbjct: 18  LLLSFHLAGKAVPIVFYIIGSMFLNFTPQFITVVLLLSFDFYLTKNITGRKLVQLRWWY 76

>sp|Q99JY9|ARP3_MOUSE Actin-like protein 3 (Actin-related protein 3)
          Length = 418

 Score = 30.4 bits (67), Expect = 4.5
 Identities = 19/52 (36%), Positives = 30/52 (57%)
 Frame = +3

Query: 12  GLSPEETMETLKYIREINLRGKNLCADLIWLGVVKTKNKSDPNALRSRWLKK 167
           G+ PE+++ET K ++E   R   +C DL     VK  NK D +   S+W+K+
Sbjct: 214 GIPPEQSLETAKAVKE---RYSYVCPDL-----VKEFNKYDTDG--SKWIKQ 255


 Score = 30.4 bits (67), Expect = 4.5
 Identities = 19/52 (36%), Positives = 30/52 (57%)
 Frame = +2

Query: 239 GLSPEETMETLKYIREINLRGKNLCADLIWLGVVKTKNKSDPNALRSRWLKK 394
           G+ PE+++ET K ++E   R   +C DL     VK  NK D +   S+W+K+
Sbjct: 214 GIPPEQSLETAKAVKE---RYSYVCPDL-----VKEFNKYDTDG--SKWIKQ 255

>sp|P61157|ARP3_BOVIN Actin-like protein 3 (Actin-related protein 3) (Actin-2)
 sp|P61158|ARP3_HUMAN Actin-like protein 3 (Actin-related protein 3)
 sp|Q5R8R1|ARP3_PONPY Actin-like protein 3 (Actin-related protein 3)
          Length = 418

 Score = 30.4 bits (67), Expect = 4.5
 Identities = 19/52 (36%), Positives = 30/52 (57%)
 Frame = +3

Query: 12  GLSPEETMETLKYIREINLRGKNLCADLIWLGVVKTKNKSDPNALRSRWLKK 167
           G+ PE+++ET K ++E   R   +C DL     VK  NK D +   S+W+K+
Sbjct: 214 GIPPEQSLETAKAVKE---RYSYVCPDL-----VKEFNKYDTDG--SKWIKQ 255


 Score = 30.4 bits (67), Expect = 4.5
 Identities = 19/52 (36%), Positives = 30/52 (57%)
 Frame = +2

Query: 239 GLSPEETMETLKYIREINLRGKNLCADLIWLGVVKTKNKSDPNALRSRWLKK 394
           G+ PE+++ET K ++E   R   +C DL     VK  NK D +   S+W+K+
Sbjct: 214 GIPPEQSLETAKAVKE---RYSYVCPDL-----VKEFNKYDTDG--SKWIKQ 255

>sp|O73723|ARP3_FUGRU Actin-like protein 3 (Actin-related protein 3)
          Length = 418

 Score = 30.4 bits (67), Expect = 4.5
 Identities = 19/52 (36%), Positives = 30/52 (57%)
 Frame = +3

Query: 12  GLSPEETMETLKYIREINLRGKNLCADLIWLGVVKTKNKSDPNALRSRWLKK 167
           G+ PE+++ET K ++E   R   +C DL     VK  NK D +   S+W+K+
Sbjct: 214 GIPPEQSLETAKAVKE---RFSYVCPDL-----VKEFNKYDTDG--SKWIKQ 255


 Score = 30.4 bits (67), Expect = 4.5
 Identities = 19/52 (36%), Positives = 30/52 (57%)
 Frame = +2

Query: 239 GLSPEETMETLKYIREINLRGKNLCADLIWLGVVKTKNKSDPNALRSRWLKK 394
           G+ PE+++ET K ++E   R   +C DL     VK  NK D +   S+W+K+
Sbjct: 214 GIPPEQSLETAKAVKE---RFSYVCPDL-----VKEFNKYDTDG--SKWIKQ 255

>sp|Q9W1N6|GR59E_DROME Putative gustatory receptor 59e
          Length = 399

 Score = 29.6 bits (65), Expect = 7.6
 Identities = 19/41 (46%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = +1

Query: 439 LYLVLLNFNSLNIVVCVECYILSNFIHRKS-PDFVNLVFRL 558
           LYLVL   NSL + +CVE Y++ NF       + V LV+RL
Sbjct: 250 LYLVLNLLNSL-VSICVELYLIFNFFETPLWEESVLLVYRL 289

>sp|O35103|OMD_MOUSE Osteomodulin precursor (Osteoadherin) (OSAD) (Keratan sulfate
           proteoglycan osteomodulin) (KSPG osteomodulin)
          Length = 423

 Score = 29.6 bits (65), Expect = 7.6
 Identities = 16/53 (30%), Positives = 28/53 (52%)
 Frame = -1

Query: 488 TQTTIFKELKFNNTKYRNELIPCGFSFSVVHFSLTNATVMHLDHSYF*SLPLL 330
           T + + K ++ N    R E +P G   S+++ SL N ++  +  +YF  LP L
Sbjct: 207 TLSKMEKLMQLNLCNNRLESMPLGLPSSLMYLSLENNSISSIPDNYFDKLPKL 259

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,957,662
Number of Sequences: 369166
Number of extensions: 1491879
Number of successful extensions: 3447
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2459
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3446
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 5782011865
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00867

  1. Dr_sW_020_F20
  2. Dr_sW_021_P20