Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_020_F20
(399 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O29947|Y295_ARCFU Hypothetical protein AF0295 31 0.78
sp|P50909|TRPB1_THEMA Tryptophan synthase beta chain 1 31 1.0
sp|Q99JY9|ARP3_MOUSE Actin-like protein 3 (Actin-related pr... 30 1.3
sp|P61157|ARP3_BOVIN Actin-like protein 3 (Actin-related pr... 30 1.3
sp|O73723|ARP3_FUGRU Actin-like protein 3 (Actin-related pr... 30 1.3
sp|P37697|CCPA_ACEXY Cellulose complementing protein 30 1.7
sp|Q9X9S0|PYRD_STRPN Dihydroorotate dehydrogenase (Dihydroo... 30 2.3
sp|Q8DQG9|PYRD_STRR6 Dihydroorotate dehydrogenase (Dihydroo... 30 2.3
sp|O35103|OMD_MOUSE Osteomodulin precursor (Osteoadherin) (... 29 3.0
sp|P31266|SUH_MOUSE Recombining binding protein suppressor ... 28 5.0
>sp|O29947|Y295_ARCFU Hypothetical protein AF0295
Length = 74
Score = 31.2 bits (69), Expect = 0.78
Identities = 19/64 (29%), Positives = 33/64 (51%)
Frame = +2
Query: 23 MIYPSNYVFVYNIGDCSDTRKLEGNSNIVRFSTMTQESGSCAFVELVSGLSPEETMETLK 202
+I P+ V V+ IGD +K+EG + R + ++ + LS EE ++T+K
Sbjct: 11 IISPNEKVIVWRIGDYFLIKKIEGKKTLERIGEIRKKLEDRDML-----LSEEEVVKTVK 65
Query: 203 YIRE 214
+RE
Sbjct: 66 EVRE 69
>sp|P50909|TRPB1_THEMA Tryptophan synthase beta chain 1
Length = 389
Score = 30.8 bits (68), Expect = 1.0
Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Frame = +2
Query: 107 VRFSTMTQESGSCAFVEL--VSGLSPE-ETMETLKYIREINLRGKNLCADL 250
V + +T E AF+EL + G+ P E+ L Y+++IN++GK + +L
Sbjct: 317 VLYDAVTDEEALDAFIELSRLEGIIPALESSHALAYLKKINIKGKVVVVNL 367
>sp|Q99JY9|ARP3_MOUSE Actin-like protein 3 (Actin-related protein 3)
Length = 418
Score = 30.4 bits (67), Expect = 1.3
Identities = 19/52 (36%), Positives = 30/52 (57%)
Frame = +2
Query: 167 GLSPEETMETLKYIREINLRGKNLCADLIWLGVVKTKNKSDPNALRSRWLKK 322
G+ PE+++ET K ++E R +C DL VK NK D + S+W+K+
Sbjct: 214 GIPPEQSLETAKAVKE---RYSYVCPDL-----VKEFNKYDTDG--SKWIKQ 255
>sp|P61157|ARP3_BOVIN Actin-like protein 3 (Actin-related protein 3) (Actin-2)
sp|P61158|ARP3_HUMAN Actin-like protein 3 (Actin-related protein 3)
sp|Q5R8R1|ARP3_PONPY Actin-like protein 3 (Actin-related protein 3)
Length = 418
Score = 30.4 bits (67), Expect = 1.3
Identities = 19/52 (36%), Positives = 30/52 (57%)
Frame = +2
Query: 167 GLSPEETMETLKYIREINLRGKNLCADLIWLGVVKTKNKSDPNALRSRWLKK 322
G+ PE+++ET K ++E R +C DL VK NK D + S+W+K+
Sbjct: 214 GIPPEQSLETAKAVKE---RYSYVCPDL-----VKEFNKYDTDG--SKWIKQ 255
>sp|O73723|ARP3_FUGRU Actin-like protein 3 (Actin-related protein 3)
Length = 418
Score = 30.4 bits (67), Expect = 1.3
Identities = 19/52 (36%), Positives = 30/52 (57%)
Frame = +2
Query: 167 GLSPEETMETLKYIREINLRGKNLCADLIWLGVVKTKNKSDPNALRSRWLKK 322
G+ PE+++ET K ++E R +C DL VK NK D + S+W+K+
Sbjct: 214 GIPPEQSLETAKAVKE---RFSYVCPDL-----VKEFNKYDTDG--SKWIKQ 255
>sp|P37697|CCPA_ACEXY Cellulose complementing protein
Length = 353
Score = 30.0 bits (66), Expect = 1.7
Identities = 21/60 (35%), Positives = 27/60 (45%)
Frame = -1
Query: 309 RDRNAFGSLLFLVFTTPNHMRSAHKFFPRRFISRIYFNVSMVSSGDSPDTSSTNAQLPDS 130
R+R G L F F R KFFP + NVS ++S DT+S+ A P S
Sbjct: 249 RERPRPGDLSFF-FQGMRDTRDEKKFFPVASTRSVRSNVSRMTSMTKTDTNSSQASRPGS 307
>sp|Q9X9S0|PYRD_STRPN Dihydroorotate dehydrogenase (Dihydroorotate oxidase) (DHOdehase)
(DHODase) (DHOD)
Length = 311
Score = 29.6 bits (65), Expect = 2.3
Identities = 16/34 (47%), Positives = 22/34 (64%)
Frame = +2
Query: 128 QESGSCAFVELVSGLSPEETMETLKYIREINLRG 229
+ES F+ LV G+SPEET LK ++E + RG
Sbjct: 91 KESNRTFFLSLV-GMSPEETHTILKKVQESDFRG 123
>sp|Q8DQG9|PYRD_STRR6 Dihydroorotate dehydrogenase (Dihydroorotate oxidase) (DHOdehase)
(DHODase) (DHOD)
Length = 311
Score = 29.6 bits (65), Expect = 2.3
Identities = 16/34 (47%), Positives = 22/34 (64%)
Frame = +2
Query: 128 QESGSCAFVELVSGLSPEETMETLKYIREINLRG 229
+ES F+ LV G+SPEET LK ++E + RG
Sbjct: 91 KESNRTFFLSLV-GMSPEETHTILKKVQESDFRG 123
>sp|O35103|OMD_MOUSE Osteomodulin precursor (Osteoadherin) (OSAD) (Keratan sulfate
proteoglycan osteomodulin) (KSPG osteomodulin)
Length = 423
Score = 29.3 bits (64), Expect = 3.0
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = -2
Query: 398 KELKFNNTKYRNELIPCGFSFSVVHFSLTNATVMHLDHSYF*SLPLL 258
K ++ N R E +P G S+++ SL N ++ + +YF LP L
Sbjct: 213 KLMQLNLCNNRLESMPLGLPSSLMYLSLENNSISSIPDNYFDKLPKL 259
>sp|P31266|SUH_MOUSE Recombining binding protein suppressor of hairless (J
kappa-recombination signal binding protein) (RBP-J
kappa)
Length = 526
Score = 28.5 bits (62), Expect = 5.0
Identities = 28/96 (29%), Positives = 45/96 (46%), Gaps = 14/96 (14%)
Frame = +2
Query: 128 QESGSCAFVELVSGLSPEETMETLKYIREINLRGKNLC-ADLIWLG--------VVKTK- 277
QES CAF+ + G S +E ++++NL GKN C A +++ ++ K
Sbjct: 121 QESQPCAFIGI--GNSDQE-------MQQLNLEGKNYCTAKTLYISDSDKRKHFMLSVKM 171
Query: 278 ---NKSDPNALRSRWLKK-SEPPKKKNRME*VHSCI 373
N D S+ +K S+P KKK ++ CI
Sbjct: 172 FYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCI 207
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,170,645
Number of Sequences: 369166
Number of extensions: 856096
Number of successful extensions: 2216
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2216
length of database: 68,354,980
effective HSP length: 98
effective length of database: 50,250,950
effective search space used: 1708532300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)