Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_021_P20
(680 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P38962|TVP23_YEAST TLG2-vesicle protein of 23 kDa 31 2.6
sp|Q99JY9|ARP3_MOUSE Actin-like protein 3 (Actin-related pr... 30 4.5
sp|P61157|ARP3_BOVIN Actin-like protein 3 (Actin-related pr... 30 4.5
sp|O73723|ARP3_FUGRU Actin-like protein 3 (Actin-related pr... 30 4.5
sp|Q9W1N6|GR59E_DROME Putative gustatory receptor 59e 30 7.6
>sp|P38962|TVP23_YEAST TLG2-vesicle protein of 23 kDa
Length = 199
Score = 31.2 bits (69), Expect = 2.6
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 6/59 (10%)
Frame = +1
Query: 448 VLLNFNSLNIVVCVECYILSNFIHRKSPDFVNLV------FRLTLNVCFMKLLNVTYWY 606
+LL+F+ V + YI+ + +P F+ +V F LT N+ KL+ + +WY
Sbjct: 18 LLLSFHLAGKAVPIVFYIIGSMFLNFTPQFITVVLLLSFDFYLTKNITGRKLVQLRWWY 76
>sp|Q99JY9|ARP3_MOUSE Actin-like protein 3 (Actin-related protein 3)
Length = 418
Score = 30.4 bits (67), Expect = 4.5
Identities = 19/52 (36%), Positives = 30/52 (57%)
Frame = +3
Query: 12 GLSPEETMETLKYIREINLRGKNLCADLIWLGVVKTKNKSDPNALRSRWLKK 167
G+ PE+++ET K ++E R +C DL VK NK D + S+W+K+
Sbjct: 214 GIPPEQSLETAKAVKE---RYSYVCPDL-----VKEFNKYDTDG--SKWIKQ 255
Score = 30.4 bits (67), Expect = 4.5
Identities = 19/52 (36%), Positives = 30/52 (57%)
Frame = +2
Query: 239 GLSPEETMETLKYIREINLRGKNLCADLIWLGVVKTKNKSDPNALRSRWLKK 394
G+ PE+++ET K ++E R +C DL VK NK D + S+W+K+
Sbjct: 214 GIPPEQSLETAKAVKE---RYSYVCPDL-----VKEFNKYDTDG--SKWIKQ 255
>sp|P61157|ARP3_BOVIN Actin-like protein 3 (Actin-related protein 3) (Actin-2)
sp|P61158|ARP3_HUMAN Actin-like protein 3 (Actin-related protein 3)
sp|Q5R8R1|ARP3_PONPY Actin-like protein 3 (Actin-related protein 3)
Length = 418
Score = 30.4 bits (67), Expect = 4.5
Identities = 19/52 (36%), Positives = 30/52 (57%)
Frame = +3
Query: 12 GLSPEETMETLKYIREINLRGKNLCADLIWLGVVKTKNKSDPNALRSRWLKK 167
G+ PE+++ET K ++E R +C DL VK NK D + S+W+K+
Sbjct: 214 GIPPEQSLETAKAVKE---RYSYVCPDL-----VKEFNKYDTDG--SKWIKQ 255
Score = 30.4 bits (67), Expect = 4.5
Identities = 19/52 (36%), Positives = 30/52 (57%)
Frame = +2
Query: 239 GLSPEETMETLKYIREINLRGKNLCADLIWLGVVKTKNKSDPNALRSRWLKK 394
G+ PE+++ET K ++E R +C DL VK NK D + S+W+K+
Sbjct: 214 GIPPEQSLETAKAVKE---RYSYVCPDL-----VKEFNKYDTDG--SKWIKQ 255
>sp|O73723|ARP3_FUGRU Actin-like protein 3 (Actin-related protein 3)
Length = 418
Score = 30.4 bits (67), Expect = 4.5
Identities = 19/52 (36%), Positives = 30/52 (57%)
Frame = +3
Query: 12 GLSPEETMETLKYIREINLRGKNLCADLIWLGVVKTKNKSDPNALRSRWLKK 167
G+ PE+++ET K ++E R +C DL VK NK D + S+W+K+
Sbjct: 214 GIPPEQSLETAKAVKE---RFSYVCPDL-----VKEFNKYDTDG--SKWIKQ 255
Score = 30.4 bits (67), Expect = 4.5
Identities = 19/52 (36%), Positives = 30/52 (57%)
Frame = +2
Query: 239 GLSPEETMETLKYIREINLRGKNLCADLIWLGVVKTKNKSDPNALRSRWLKK 394
G+ PE+++ET K ++E R +C DL VK NK D + S+W+K+
Sbjct: 214 GIPPEQSLETAKAVKE---RFSYVCPDL-----VKEFNKYDTDG--SKWIKQ 255
>sp|Q9W1N6|GR59E_DROME Putative gustatory receptor 59e
Length = 399
Score = 29.6 bits (65), Expect = 7.6
Identities = 19/41 (46%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = +1
Query: 439 LYLVLLNFNSLNIVVCVECYILSNFIHRKS-PDFVNLVFRL 558
LYLVL NSL + +CVE Y++ NF + V LV+RL
Sbjct: 250 LYLVLNLLNSL-VSICVELYLIFNFFETPLWEESVLLVYRL 289
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,701,201
Number of Sequences: 369166
Number of extensions: 1443370
Number of successful extensions: 3372
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2364
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3371
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 5782011865
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)