• TOP
• EST
• Cluster

Planaria EST Database

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00863
         (435 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q03344|ATIF1_RAT  ATPase inhibitor, mitochondrial precursor     74   1e-13
sp|O35143|ATIF1_MOUSE  ATPase inhibitor, mitochondrial precu...    74   1e-13
sp|O44441|ATIF2_CAEEL  Probable ATPase inhibitor B0546.1, mi...    72   4e-13
sp|Q9UII2|ATIF1_HUMAN  ATPase inhibitor, mitochondrial precu...    67   2e-11
sp|P01096|ATIF1_BOVIN  ATPase inhibitor, mitochondrial precu...    67   2e-11
sp|Q29307|ATIF1_PIG  ATPase inhibitor, mitochondrial precursor     65   8e-11
sp|P37209|ATIF1_CAEEL  ATPase inhibitor, mitochondrial homolog     56   3e-08
sp|Q15643|TRIPB_HUMAN  Thyroid receptor-interacting protein ...    35   0.090
sp|O61308|PUMA_PARUN  227 kDa spindle- and centromere-associ...    32   0.45 
sp|P14105|MYH9_CHICK  Myosin-9 (Myosin heavy chain, nonmuscl...    32   0.58 

>sp|Q03344|ATIF1_RAT ATPase inhibitor, mitochondrial precursor
          Length = 107

 Score = 74.3 bits (181), Expect = 1e-13
 Identities = 33/66 (50%), Positives = 49/66 (74%)
 Frame = +2

Query: 149 TIRDAGGSFGKKEAYLEEEYFRKLNNRQIKELKDHLEDEIDTHTHEIEKHEEAVKRHKRK 328
           +IR+AGG+FGK+E   E+ YFR+    Q+  LK H EDEID H+ EIE+ ++ ++RHK+K
Sbjct: 39  SIREAGGAFGKREKAEEDRYFREKTREQLAALKKHHEDEIDHHSKEIERLQKQIERHKKK 98

Query: 329 IEEIKN 346
           I+ +KN
Sbjct: 99  IKYLKN 104

>sp|O35143|ATIF1_MOUSE ATPase inhibitor, mitochondrial precursor
          Length = 106

 Score = 74.3 bits (181), Expect = 1e-13
 Identities = 32/66 (48%), Positives = 49/66 (74%)
 Frame = +2

Query: 149 TIRDAGGSFGKKEAYLEEEYFRKLNNRQIKELKDHLEDEIDTHTHEIEKHEEAVKRHKRK 328
           +IR+AGG+FGK+E   E+ YFR+    Q+  L+ H EDEID H+ EIE+ ++ + RHK+K
Sbjct: 39  SIREAGGAFGKREKAEEDRYFREKTKEQLAALRKHHEDEIDHHSKEIERLQKQIDRHKKK 98

Query: 329 IEEIKN 346
           I+++KN
Sbjct: 99  IQQLKN 104

>sp|O44441|ATIF2_CAEEL Probable ATPase inhibitor B0546.1, mitochondrial precursor
          Length = 109

 Score = 72.4 bits (176), Expect = 4e-13
 Identities = 29/65 (44%), Positives = 50/65 (76%)
 Frame = +2

Query: 149 TIRDAGGSFGKKEAYLEEEYFRKLNNRQIKELKDHLEDEIDTHTHEIEKHEEAVKRHKRK 328
           +IRDAGG+FGK EA  E+EYF K    Q++EL++H+++E+  H  ++E H++ ++RH+++
Sbjct: 36  SIRDAGGAFGKMEAAREDEYFYKKQKAQLQELREHIQEEVKHHEGQLENHKKVLERHQQR 95

Query: 329 IEEIK 343
           I EI+
Sbjct: 96  ISEIE 100

>sp|Q9UII2|ATIF1_HUMAN ATPase inhibitor, mitochondrial precursor
 sp|Q5RFJ9|ATIF1_PONPY ATPase inhibitor, mitochondrial precursor
          Length = 106

 Score = 67.0 bits (162), Expect = 2e-11
 Identities = 31/66 (46%), Positives = 47/66 (71%)
 Frame = +2

Query: 149 TIRDAGGSFGKKEAYLEEEYFRKLNNRQIKELKDHLEDEIDTHTHEIEKHEEAVKRHKRK 328
           +IR+AGG+FGK+E   EE YFR  +  Q+  LK H E+EI  H  EIE+ ++ ++RHK+K
Sbjct: 39  SIREAGGAFGKREQAEEERYFRAQSREQLAALKKHHEEEIVHHKKEIERLQKEIERHKQK 98

Query: 329 IEEIKN 346
           I+ +K+
Sbjct: 99  IKMLKH 104

>sp|P01096|ATIF1_BOVIN ATPase inhibitor, mitochondrial precursor
          Length = 109

 Score = 67.0 bits (162), Expect = 2e-11
 Identities = 31/69 (44%), Positives = 45/69 (65%)
 Frame = +2

Query: 152 IRDAGGSFGKKEAYLEEEYFRKLNNRQIKELKDHLEDEIDTHTHEIEKHEEAVKRHKRKI 331
           +RDAGG+FGK+E   EE YFR     Q+  LK H E+EI  H  EIE+ ++ ++RHK+ I
Sbjct: 40  VRDAGGAFGKREQAEEERYFRARAKEQLAALKKHHENEISHHAKEIERLQKEIERHKQSI 99

Query: 332 EEIKNLVKD 358
           +++K    D
Sbjct: 100 KKLKQSEDD 108

>sp|Q29307|ATIF1_PIG ATPase inhibitor, mitochondrial precursor
          Length = 108

 Score = 64.7 bits (156), Expect = 8e-11
 Identities = 30/65 (46%), Positives = 43/65 (66%)
 Frame = +2

Query: 152 IRDAGGSFGKKEAYLEEEYFRKLNNRQIKELKDHLEDEIDTHTHEIEKHEEAVKRHKRKI 331
           +R AGG+FGKKE   EE YFR     Q+  LK H E+ I  H  EIE+ ++ ++RHK+ I
Sbjct: 40  VRXAGGAFGKKEQADEERYFRARAREQLAALKKHHENXISHHVKEIERLQKEIERHKQSI 99

Query: 332 EEIKN 346
           +++KN
Sbjct: 100 KKLKN 104

>sp|P37209|ATIF1_CAEEL ATPase inhibitor, mitochondrial homolog
          Length = 88

 Score = 56.2 bits (134), Expect = 3e-08
 Identities = 26/65 (40%), Positives = 42/65 (64%)
 Frame = +2

Query: 149 TIRDAGGSFGKKEAYLEEEYFRKLNNRQIKELKDHLEDEIDTHTHEIEKHEEAVKRHKRK 328
           +IR+AGGS G   A  EEEYFR+    Q+  LK  LE ++     EI  HE+ +++H+++
Sbjct: 19  SIREAGGSLGMMGATREEEYFRRQQKDQLDNLKKKLEADMTQSQQEIRDHEKVLEQHQQR 78

Query: 329 IEEIK 343
           ++EI+
Sbjct: 79  LKEIE 83

>sp|Q15643|TRIPB_HUMAN Thyroid receptor-interacting protein 11 (TRIP-11) (Golgi-associated
           microtubule-binding protein 210) (GMAP-210) (Trip230)
           (Clonal evolution related gene on chromosome 14)
          Length = 1979

 Score = 34.7 bits (78), Expect = 0.090
 Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 15/56 (26%)
 Frame = +2

Query: 233 IKELKDHLEDEIDTHTHEI---------------EKHEEAVKRHKRKIEEIKNLVK 355
           IKELK +   EID H HE+                +H E +  ++ +IEE++NL++
Sbjct: 218 IKELKQNRSQEIDDHQHEMSVLQNAHQQKLTEISRRHREELSDYEERIEELENLLQ 273

>sp|O61308|PUMA_PARUN 227 kDa spindle- and centromere-associated protein (PUMA1)
          Length = 1955

 Score = 32.3 bits (72), Expect = 0.45
 Identities = 19/70 (27%), Positives = 35/70 (50%)
 Frame = +2

Query: 158  DAGGSFGKKEAYLEEEYFRKLNNRQIKELKDHLEDEIDTHTHEIEKHEEAVKRHKRKIEE 337
            D G + G+  +  E     +  NR+ K   + L+ +IDT  +  E  E  V+R K+KI +
Sbjct: 1070 DLGNATGRLRSSEEHNAILQSENRKSKTEIEALKHQIDTIMNTKESCESEVERLKKKIVQ 1129

Query: 338  IKNLVKDHDK 367
               + K+ ++
Sbjct: 1130 TTTITKEQNE 1139

>sp|P14105|MYH9_CHICK Myosin-9 (Myosin heavy chain, nonmuscle IIa) (Nonmuscle myosin heavy
            chain IIa) (NMMHC II-a) (NMMHC-IIA) (Cellular myosin
            heavy chain, type A) (Nonmuscle myosin heavy chain-A)
            (NMMHC-A)
          Length = 1959

 Score = 32.0 bits (71), Expect = 0.58
 Identities = 16/60 (26%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
 Frame = +2

Query: 200  EEYFRKLNNRQIKELKDHLEDEIDTHTHEI----EKHEEAVKRHKRKIEEIKNLVKDHDK 367
            ++  R    +++  LK  LEDE  TH  +I    +KH +A++    ++E+ K +  + +K
Sbjct: 1158 QQELRSKREQEVTVLKKTLEDEAKTHEAQIQEMRQKHSQAIEELAEQLEQTKRVKANLEK 1217

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,018,525
Number of Sequences: 369166
Number of extensions: 449514
Number of successful extensions: 2796
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2530
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2771
length of database: 68,354,980
effective HSP length: 100
effective length of database: 49,881,480
effective search space used: 2194785120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

1. Dr_sW_021_O20
2. Dr_sW_007_A24
3. Dr_sW_009_M22
4. Dr_sW_016_H02
5. Dr_sW_028_D19