Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_007_A24
(250 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O44441|ATIF2_CAEEL Probable ATPase inhibitor B0546.1, mi... 65 4e-11
sp|Q03344|ATIF1_RAT ATPase inhibitor, mitochondrial precursor 64 1e-10
sp|O35143|ATIF1_MOUSE ATPase inhibitor, mitochondrial precu... 62 5e-10
sp|P01096|ATIF1_BOVIN ATPase inhibitor, mitochondrial precu... 59 3e-09
sp|Q9UII2|ATIF1_HUMAN ATPase inhibitor, mitochondrial precu... 59 5e-09
sp|Q29307|ATIF1_PIG ATPase inhibitor, mitochondrial precursor 55 5e-08
sp|P37209|ATIF1_CAEEL ATPase inhibitor, mitochondrial homolog 50 2e-06
sp|Q40554|IF3A_TOBAC Eukaryotic translation initiation fact... 28 5.0
sp|O75116|ROCK2_HUMAN Rho-associated protein kinase 2 (Rho-... 28 5.0
sp|Q28021|ROCK2_BOVIN Rho-associated protein kinase 2 (Rho-... 28 6.5
>sp|O44441|ATIF2_CAEEL Probable ATPase inhibitor B0546.1, mitochondrial precursor
Length = 109
Score = 65.5 bits (158), Expect = 4e-11
Identities = 26/57 (45%), Positives = 43/57 (75%)
Frame = +2
Query: 80 TIRDAGGSFGKKEAYLEEEYFRKLNNRQIKELKDHLEDEIDTHTHEIEKHEEAVKRH 250
+IRDAGG+FGK EA E+EYF K Q++EL++H+++E+ H ++E H++ ++RH
Sbjct: 36 SIRDAGGAFGKMEAAREDEYFYKKQKAQLQELREHIQEEVKHHEGQLENHKKVLERH 92
>sp|Q03344|ATIF1_RAT ATPase inhibitor, mitochondrial precursor
Length = 107
Score = 63.5 bits (153), Expect = 1e-10
Identities = 28/57 (49%), Positives = 41/57 (71%)
Frame = +2
Query: 80 TIRDAGGSFGKKEAYLEEEYFRKLNNRQIKELKDHLEDEIDTHTHEIEKHEEAVKRH 250
+IR+AGG+FGK+E E+ YFR+ Q+ LK H EDEID H+ EIE+ ++ ++RH
Sbjct: 39 SIREAGGAFGKREKAEEDRYFREKTREQLAALKKHHEDEIDHHSKEIERLQKQIERH 95
>sp|O35143|ATIF1_MOUSE ATPase inhibitor, mitochondrial precursor
Length = 106
Score = 61.6 bits (148), Expect = 5e-10
Identities = 27/57 (47%), Positives = 40/57 (70%)
Frame = +2
Query: 80 TIRDAGGSFGKKEAYLEEEYFRKLNNRQIKELKDHLEDEIDTHTHEIEKHEEAVKRH 250
+IR+AGG+FGK+E E+ YFR+ Q+ L+ H EDEID H+ EIE+ ++ + RH
Sbjct: 39 SIREAGGAFGKREKAEEDRYFREKTKEQLAALRKHHEDEIDHHSKEIERLQKQIDRH 95
>sp|P01096|ATIF1_BOVIN ATPase inhibitor, mitochondrial precursor
Length = 109
Score = 59.3 bits (142), Expect = 3e-09
Identities = 27/56 (48%), Positives = 37/56 (66%)
Frame = +2
Query: 83 IRDAGGSFGKKEAYLEEEYFRKLNNRQIKELKDHLEDEIDTHTHEIEKHEEAVKRH 250
+RDAGG+FGK+E EE YFR Q+ LK H E+EI H EIE+ ++ ++RH
Sbjct: 40 VRDAGGAFGKREQAEEERYFRARAKEQLAALKKHHENEISHHAKEIERLQKEIERH 95
>sp|Q9UII2|ATIF1_HUMAN ATPase inhibitor, mitochondrial precursor
sp|Q5RFJ9|ATIF1_PONPY ATPase inhibitor, mitochondrial precursor
Length = 106
Score = 58.5 bits (140), Expect = 5e-09
Identities = 27/57 (47%), Positives = 39/57 (68%)
Frame = +2
Query: 80 TIRDAGGSFGKKEAYLEEEYFRKLNNRQIKELKDHLEDEIDTHTHEIEKHEEAVKRH 250
+IR+AGG+FGK+E EE YFR + Q+ LK H E+EI H EIE+ ++ ++RH
Sbjct: 39 SIREAGGAFGKREQAEEERYFRAQSREQLAALKKHHEEEIVHHKKEIERLQKEIERH 95
>sp|Q29307|ATIF1_PIG ATPase inhibitor, mitochondrial precursor
Length = 108
Score = 55.1 bits (131), Expect = 5e-08
Identities = 26/56 (46%), Positives = 35/56 (62%)
Frame = +2
Query: 83 IRDAGGSFGKKEAYLEEEYFRKLNNRQIKELKDHLEDEIDTHTHEIEKHEEAVKRH 250
+R AGG+FGKKE EE YFR Q+ LK H E+ I H EIE+ ++ ++RH
Sbjct: 40 VRXAGGAFGKKEQADEERYFRARAREQLAALKKHHENXISHHVKEIERLQKEIERH 95
>sp|P37209|ATIF1_CAEEL ATPase inhibitor, mitochondrial homolog
Length = 88
Score = 49.7 bits (117), Expect = 2e-06
Identities = 24/57 (42%), Positives = 34/57 (59%)
Frame = +2
Query: 80 TIRDAGGSFGKKEAYLEEEYFRKLNNRQIKELKDHLEDEIDTHTHEIEKHEEAVKRH 250
+IR+AGGS G A EEEYFR+ Q+ LK LE ++ EI HE+ +++H
Sbjct: 19 SIREAGGSLGMMGATREEEYFRRQQKDQLDNLKKKLEADMTQSQQEIRDHEKVLEQH 75
>sp|Q40554|IF3A_TOBAC Eukaryotic translation initiation factor 3 subunit 10 (eIF-3 theta)
(Eukaryotic translation initiation factor 3 large
subunit) (eIF3a) (PNLA-35)
Length = 958
Score = 28.5 bits (62), Expect = 5.0
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +2
Query: 134 EYFRKLNNRQIKELKDHLEDEIDTHTHEIEKHEEAVKR 247
EY ++ N R +KE++D +E HE EK + K+
Sbjct: 611 EYEQRRNQRILKEIEDRELEEAQALLHEAEKRSKRKKK 648
>sp|O75116|ROCK2_HUMAN Rho-associated protein kinase 2 (Rho-associated, coiled-coil
containing protein kinase 2) (p164 ROCK-2) (Rho kinase 2)
Length = 1388
Score = 28.5 bits (62), Expect = 5.0
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +2
Query: 86 RDAGGSFGKKEAYLE-EEYFRKLNNRQIKELKDHLEDEIDTHTHEIEKHEE 235
+DA G + + LE E+YF L Q++ELK+ E++ +K +E
Sbjct: 853 QDADGQMKELQDQLEAEQYFSTLYKTQVRELKEECEEKTKLGKELQQKKQE 903
>sp|Q28021|ROCK2_BOVIN Rho-associated protein kinase 2 (Rho-associated, coiled-coil
containing protein kinase 2) (p164 ROCK-2)
Length = 1388
Score = 28.1 bits (61), Expect = 6.5
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = +2
Query: 86 RDAGGSFGKKEAYLE-EEYFRKLNNRQIKELKDHLEDE 196
+DA G + + LE E+YF L Q++ELK+ E++
Sbjct: 853 QDADGQMKELQDQLEAEQYFSTLYKTQVRELKEECEEK 890
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,698,196
Number of Sequences: 369166
Number of extensions: 229029
Number of successful extensions: 1281
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1238
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1278
length of database: 68,354,980
effective HSP length: 53
effective length of database: 58,564,025
effective search space used: 1698356725
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)