Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_009_M22
(407 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q03344|ATIF1_RAT ATPase inhibitor, mitochondrial precursor 74 9e-14
sp|O35143|ATIF1_MOUSE ATPase inhibitor, mitochondrial precu... 74 9e-14
sp|O44441|ATIF2_CAEEL Probable ATPase inhibitor B0546.1, mi... 72 3e-13
sp|Q9UII2|ATIF1_HUMAN ATPase inhibitor, mitochondrial precu... 67 1e-11
sp|P01096|ATIF1_BOVIN ATPase inhibitor, mitochondrial precu... 67 1e-11
sp|Q29307|ATIF1_PIG ATPase inhibitor, mitochondrial precursor 65 7e-11
sp|P37209|ATIF1_CAEEL ATPase inhibitor, mitochondrial homolog 56 2e-08
sp|Q15643|TRIPB_HUMAN Thyroid receptor-interacting protein ... 35 0.076
sp|O61308|PUMA_PARUN 227 kDa spindle- and centromere-associ... 32 0.38
sp|P14105|MYH9_CHICK Myosin-9 (Myosin heavy chain, nonmuscl... 32 0.50
>sp|Q03344|ATIF1_RAT ATPase inhibitor, mitochondrial precursor
Length = 107
Score = 74.3 bits (181), Expect = 9e-14
Identities = 33/66 (50%), Positives = 49/66 (74%)
Frame = +3
Query: 126 TIRDAGGSFGKKEAYLEEEYFRKLNNRQIKELKDHLEDEIDTHTHEIEKHEEAVKRHKRK 305
+IR+AGG+FGK+E E+ YFR+ Q+ LK H EDEID H+ EIE+ ++ ++RHK+K
Sbjct: 39 SIREAGGAFGKREKAEEDRYFREKTREQLAALKKHHEDEIDHHSKEIERLQKQIERHKKK 98
Query: 306 IEEIKN 323
I+ +KN
Sbjct: 99 IKYLKN 104
>sp|O35143|ATIF1_MOUSE ATPase inhibitor, mitochondrial precursor
Length = 106
Score = 74.3 bits (181), Expect = 9e-14
Identities = 32/66 (48%), Positives = 49/66 (74%)
Frame = +3
Query: 126 TIRDAGGSFGKKEAYLEEEYFRKLNNRQIKELKDHLEDEIDTHTHEIEKHEEAVKRHKRK 305
+IR+AGG+FGK+E E+ YFR+ Q+ L+ H EDEID H+ EIE+ ++ + RHK+K
Sbjct: 39 SIREAGGAFGKREKAEEDRYFREKTKEQLAALRKHHEDEIDHHSKEIERLQKQIDRHKKK 98
Query: 306 IEEIKN 323
I+++KN
Sbjct: 99 IQQLKN 104
>sp|O44441|ATIF2_CAEEL Probable ATPase inhibitor B0546.1, mitochondrial precursor
Length = 109
Score = 72.4 bits (176), Expect = 3e-13
Identities = 29/65 (44%), Positives = 50/65 (76%)
Frame = +3
Query: 126 TIRDAGGSFGKKEAYLEEEYFRKLNNRQIKELKDHLEDEIDTHTHEIEKHEEAVKRHKRK 305
+IRDAGG+FGK EA E+EYF K Q++EL++H+++E+ H ++E H++ ++RH+++
Sbjct: 36 SIRDAGGAFGKMEAAREDEYFYKKQKAQLQELREHIQEEVKHHEGQLENHKKVLERHQQR 95
Query: 306 IEEIK 320
I EI+
Sbjct: 96 ISEIE 100
>sp|Q9UII2|ATIF1_HUMAN ATPase inhibitor, mitochondrial precursor
sp|Q5RFJ9|ATIF1_PONPY ATPase inhibitor, mitochondrial precursor
Length = 106
Score = 67.0 bits (162), Expect = 1e-11
Identities = 31/66 (46%), Positives = 47/66 (71%)
Frame = +3
Query: 126 TIRDAGGSFGKKEAYLEEEYFRKLNNRQIKELKDHLEDEIDTHTHEIEKHEEAVKRHKRK 305
+IR+AGG+FGK+E EE YFR + Q+ LK H E+EI H EIE+ ++ ++RHK+K
Sbjct: 39 SIREAGGAFGKREQAEEERYFRAQSREQLAALKKHHEEEIVHHKKEIERLQKEIERHKQK 98
Query: 306 IEEIKN 323
I+ +K+
Sbjct: 99 IKMLKH 104
>sp|P01096|ATIF1_BOVIN ATPase inhibitor, mitochondrial precursor
Length = 109
Score = 67.0 bits (162), Expect = 1e-11
Identities = 31/69 (44%), Positives = 45/69 (65%)
Frame = +3
Query: 129 IRDAGGSFGKKEAYLEEEYFRKLNNRQIKELKDHLEDEIDTHTHEIEKHEEAVKRHKRKI 308
+RDAGG+FGK+E EE YFR Q+ LK H E+EI H EIE+ ++ ++RHK+ I
Sbjct: 40 VRDAGGAFGKREQAEEERYFRARAKEQLAALKKHHENEISHHAKEIERLQKEIERHKQSI 99
Query: 309 EEIKNLVKD 335
+++K D
Sbjct: 100 KKLKQSEDD 108
>sp|Q29307|ATIF1_PIG ATPase inhibitor, mitochondrial precursor
Length = 108
Score = 64.7 bits (156), Expect = 7e-11
Identities = 30/65 (46%), Positives = 43/65 (66%)
Frame = +3
Query: 129 IRDAGGSFGKKEAYLEEEYFRKLNNRQIKELKDHLEDEIDTHTHEIEKHEEAVKRHKRKI 308
+R AGG+FGKKE EE YFR Q+ LK H E+ I H EIE+ ++ ++RHK+ I
Sbjct: 40 VRXAGGAFGKKEQADEERYFRARAREQLAALKKHHENXISHHVKEIERLQKEIERHKQSI 99
Query: 309 EEIKN 323
+++KN
Sbjct: 100 KKLKN 104
>sp|P37209|ATIF1_CAEEL ATPase inhibitor, mitochondrial homolog
Length = 88
Score = 56.2 bits (134), Expect = 2e-08
Identities = 26/65 (40%), Positives = 42/65 (64%)
Frame = +3
Query: 126 TIRDAGGSFGKKEAYLEEEYFRKLNNRQIKELKDHLEDEIDTHTHEIEKHEEAVKRHKRK 305
+IR+AGGS G A EEEYFR+ Q+ LK LE ++ EI HE+ +++H+++
Sbjct: 19 SIREAGGSLGMMGATREEEYFRRQQKDQLDNLKKKLEADMTQSQQEIRDHEKVLEQHQQR 78
Query: 306 IEEIK 320
++EI+
Sbjct: 79 LKEIE 83
>sp|Q15643|TRIPB_HUMAN Thyroid receptor-interacting protein 11 (TRIP-11) (Golgi-associated
microtubule-binding protein 210) (GMAP-210) (Trip230)
(Clonal evolution related gene on chromosome 14)
Length = 1979
Score = 34.7 bits (78), Expect = 0.076
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 15/56 (26%)
Frame = +3
Query: 210 IKELKDHLEDEIDTHTHEI---------------EKHEEAVKRHKRKIEEIKNLVK 332
IKELK + EID H HE+ +H E + ++ +IEE++NL++
Sbjct: 218 IKELKQNRSQEIDDHQHEMSVLQNAHQQKLTEISRRHREELSDYEERIEELENLLQ 273
>sp|O61308|PUMA_PARUN 227 kDa spindle- and centromere-associated protein (PUMA1)
Length = 1955
Score = 32.3 bits (72), Expect = 0.38
Identities = 19/70 (27%), Positives = 35/70 (50%)
Frame = +3
Query: 135 DAGGSFGKKEAYLEEEYFRKLNNRQIKELKDHLEDEIDTHTHEIEKHEEAVKRHKRKIEE 314
D G + G+ + E + NR+ K + L+ +IDT + E E V+R K+KI +
Sbjct: 1070 DLGNATGRLRSSEEHNAILQSENRKSKTEIEALKHQIDTIMNTKESCESEVERLKKKIVQ 1129
Query: 315 IKNLVKDHDK 344
+ K+ ++
Sbjct: 1130 TTTITKEQNE 1139
>sp|P14105|MYH9_CHICK Myosin-9 (Myosin heavy chain, nonmuscle IIa) (Nonmuscle myosin heavy
chain IIa) (NMMHC II-a) (NMMHC-IIA) (Cellular myosin
heavy chain, type A) (Nonmuscle myosin heavy chain-A)
(NMMHC-A)
Length = 1959
Score = 32.0 bits (71), Expect = 0.50
Identities = 16/60 (26%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
Frame = +3
Query: 177 EEYFRKLNNRQIKELKDHLEDEIDTHTHEI----EKHEEAVKRHKRKIEEIKNLVKDHDK 344
++ R +++ LK LEDE TH +I +KH +A++ ++E+ K + + +K
Sbjct: 1158 QQELRSKREQEVTVLKKTLEDEAKTHEAQIQEMRQKHSQAIEELAEQLEQTKRVKANLEK 1217
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,864,692
Number of Sequences: 369166
Number of extensions: 419283
Number of successful extensions: 2737
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2471
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2712
length of database: 68,354,980
effective HSP length: 98
effective length of database: 50,250,950
effective search space used: 1859285150
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)