Planaria EST Database

DrC_00839

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00839
         (1234 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q58042|Y625_METJA  Hypothetical ATP-binding protein MJ0625      36   0.20 
sp|P32596|VGLN_BEFV  Nonstructural glycoprotein GNS precursor      35   0.58 
sp|Q5FIX8|Y1527_LACAC  Hypothetical UPF0348 protein LBA1527        33   1.3  
sp|P06775|HIP1_YEAST  Histidine permease                           33   1.7  
sp|P33893|GATB_YEAST  Probable glutamyl-tRNA(Gln) amidotrans...    32   3.8  
sp|P36431|SYP_CHLTR  Prolyl-tRNA synthetase (Proline--tRNA l...    32   4.9  
sp|Q9PK01|SYP_CHLMU  Prolyl-tRNA synthetase (Proline--tRNA l...    32   4.9  
sp|P15918|RAG1_HUMAN  V(D)J recombination-activating protein...    31   6.4  

>sp|Q58042|Y625_METJA Hypothetical ATP-binding protein MJ0625
          Length = 336

 Score = 36.2 bits (82), Expect = 0.20
 Identities = 32/118 (27%), Positives = 53/118 (44%), Gaps = 7/118 (5%)
 Frame = +3

Query: 795  TLLNELIERLHDRDQISQMFNLLSLFVECVDF----KCSTATEAEVFTWLGKEKDSLQFT 962
            T+ N L E     ++I+   + LSL  E VD     K   + E  +  W+  EKD +++ 
Sbjct: 205  TIRNILKEEGFSEEEINYCLDYLSLPYEIVDLIENKKLGLSVEETIRQWINIEKDKIKYL 264

Query: 963  IDYSKRVLPELLAENNITLEKYE---RVMFKLSDLLGRLKDFKFDLFSEESFYGSENG 1127
            ID +     EL       L K++   ++ ++       +K FKF + +E  FY   NG
Sbjct: 265  IDTTDLDEEELYK----VLSKFKDKIKISYEKEVKKEEMKYFKFLIKNEILFYDVING 318

>sp|P32596|VGLN_BEFV Nonstructural glycoprotein GNS precursor
          Length = 586

 Score = 34.7 bits (78), Expect = 0.58
 Identities = 60/261 (22%), Positives = 107/261 (40%), Gaps = 7/261 (2%)
 Frame = +3

Query: 3   NISESEFPLFLYNEMRYLNIEPTLGTFSLLLQCKFSRKYYFYLVKDIIEILEKRREE--N 176
           N S  E P     + RY N+ P L T         +    F L K I + LE ++    N
Sbjct: 274 NRSRIEMPETNLAKKRYSNVGPVLLT---------TLNKRFELCKKIKKNLELKQPIPIN 324

Query: 177 IFEELTSEDDGKLFANLSEIIYSLMSLELNQRLHNLAIQGGNLPLLGSSSDWGKYIKNFS 356
               L   + GK  A    ++Y L+S  +NQ L N  +    L +       G+ I++  
Sbjct: 325 NLHYLAPFEPGKHPA----LVYRLVSTTINQSLRNKVVPVSMLSMSMCEYITGQIIEDGI 380

Query: 357 KVLIKNEPNLGVVFSNLKIWVPYYFHLNNVSVELLIDNIASTSSTHFIPDLINSVHWFSQ 536
           K  + +E  + ++ +N +I         N   E    NI   +  H       S +W++ 
Sbjct: 381 KRNLTDEDTVIILANNKEIKWKDLKGRENWYQEQANPNIIDKNPDHL------SYYWYNG 434

Query: 537 NITKSDLFHRLLQLILKYV-DFSTETELKSRIIDSFHRVFEMMT----IEYRFVMEPQIV 701
            + + D F    + IL+ +    T+TE +SRI     R+   +T    I++R + E    
Sbjct: 435 VMRREDKFTYPSRYILQTLKKIYTDTERESRISFFKFRLERNITKTEVIKFRDI-EESSD 493

Query: 702 PPFVELLRRIDDGDLFWKYID 764
               + + +  +GD +W +++
Sbjct: 494 QDHSQSVNKTLEGDDYWNWVE 514

>sp|Q5FIX8|Y1527_LACAC Hypothetical UPF0348 protein LBA1527
          Length = 383

 Score = 33.5 bits (75), Expect = 1.3
 Identities = 33/116 (28%), Positives = 49/116 (42%), Gaps = 7/116 (6%)
 Frame = +3

Query: 504 DLINSVHWFSQN----ITKSDLFHR--LLQLILKYVDFSTETELKSRIIDSFHRVFEMMT 665
           D  N  +W  +N    + K  ++    LL   LKY        ++S  I+   R+++M  
Sbjct: 208 DTSNLKYWMPKNEANILAKQKVYPNWNLLYPFLKY-------RIESSSIEDLRRIYQMSE 260

Query: 666 -IEYRFVMEPQIVPPFVELLRRIDDGDLFWKYIDYMCQRGLVLPTLLNELIERLHD 830
            +EY+   E  +   F E LRRI       K   Y   R L L TLLN   + + D
Sbjct: 261 GLEYKMKQEIHLARDFTEFLRRIKS-----KRYTYARLRRLSLYTLLNVTYDDMLD 311

>sp|P06775|HIP1_YEAST Histidine permease
          Length = 603

 Score = 33.1 bits (74), Expect = 1.7
 Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
 Frame = +3

Query: 765 YMCQRGLVLPTLLNELIERLHDRDQISQMFN--LLSLFVECVDFKCSTATEAEVFTWL 932
           Y C R +V    +  L + L+  D+  +  N  LL+LF   + F  ++  +AEVFTWL
Sbjct: 395 YACSRCMVAMAHIGNLPKFLNRVDKRGRPMNAILLTLFFGLLSFVAASDKQAEVFTWL 452

>sp|P33893|GATB_YEAST Probable glutamyl-tRNA(Gln) amidotransferase subunit B,
           mitochondrial precursor (GLU-ADT subunit B) (Cytochrome
           oxidase assembly factor PET112)
          Length = 541

 Score = 32.0 bits (71), Expect = 3.8
 Identities = 24/113 (21%), Positives = 47/113 (41%)
 Frame = +3

Query: 72  LGTFSLLLQCKFSRKYYFYLVKDIIEILEKRREENIFEELTSEDDGKLFANLSEIIYSLM 251
           +G   L ++    + +Y    KD+I +++  R      EL ++ D      +   I    
Sbjct: 148 IGILQLQIEQDTGKSHYTETDKDVITLVDLNRSNVPLIELVTKPDFSDIKQVRAFIKKYQ 207

Query: 252 SLELNQRLHNLAIQGGNLPLLGSSSDWGKYIKNFSKVLIKNEPNLGVVFSNLK 410
           +L     + +L I  G+L       D    I  +++V +KN PN   + + +K
Sbjct: 208 NL-----VRHLHISSGDLETGAMRVDVNLSINEYARVELKNLPNTSSIINAIK 255

>sp|P36431|SYP_CHLTR Prolyl-tRNA synthetase (Proline--tRNA ligase) (ProRS)
          Length = 581

 Score = 31.6 bits (70), Expect = 4.9
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = -3

Query: 758 IFPEQITIIDSPQQLHERRNNLRFHDESIFDRHHFKYPMERID 630
           +  +  T  DSP+Q+ E+   LR   + IFDR + KY +   D
Sbjct: 158 LMEDSYTFSDSPEQMEEQYAKLRLAYQRIFDRLNLKYVIVAAD 200

>sp|Q9PK01|SYP_CHLMU Prolyl-tRNA synthetase (Proline--tRNA ligase) (ProRS)
          Length = 579

 Score = 31.6 bits (70), Expect = 4.9
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = -3

Query: 758 IFPEQITIIDSPQQLHERRNNLRFHDESIFDRHHFKYPMERID 630
           +  +  T  DSP+Q+ E+   LR   + IFDR + KY +   D
Sbjct: 158 LMEDSYTFSDSPEQMEEQYAKLRLAYQRIFDRLNLKYVIVTAD 200

>sp|P15918|RAG1_HUMAN V(D)J recombination-activating protein 1 (RAG-1) (RING finger protein
            74)
          Length = 1043

 Score = 31.2 bits (69), Expect = 6.4
 Identities = 19/67 (28%), Positives = 25/67 (37%), Gaps = 17/67 (25%)
 Frame = +1

Query: 937  RRKIRCNSLSITpreFCRNCW-----------------RKIILRWKNTKGSCSNCRISWE 1065
            R  ++ +  SI P EFC NCW                 R + + W     SC  C  +  
Sbjct: 160  RIDVKADVDSIHPTEFCHNCWSIMHRKFSSAPCEVYFPRNVTMEWHPHTPSCDICNTARR 219

Query: 1066 G*KILSL 1086
            G K  SL
Sbjct: 220  GLKRKSL 226

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 139,692,870
Number of Sequences: 369166
Number of extensions: 3007648
Number of successful extensions: 9513
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8935
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9506
length of database: 68,354,980
effective HSP length: 113
effective length of database: 47,479,925
effective search space used: 14101537725
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00839

  1. Dr_sW_021_E11
  2. Dr_sW_013_F13