Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_013_F13
(872 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q58042|Y625_METJA Hypothetical ATP-binding protein MJ0625 36 0.12
sp|Q5FIX8|Y1527_LACAC Hypothetical UPF0348 protein LBA1527 33 0.79
sp|P06775|HIP1_YEAST Histidine permease 33 1.0
sp|P36431|SYP_CHLTR Prolyl-tRNA synthetase (Proline--tRNA l... 32 3.0
sp|Q9PK01|SYP_CHLMU Prolyl-tRNA synthetase (Proline--tRNA l... 32 3.0
sp|P15918|RAG1_HUMAN V(D)J recombination-activating protein... 31 3.9
sp|P26361|CFTR_MOUSE Cystic fibrosis transmembrane conducta... 30 6.7
sp|Q95267|GCR_TUPGB Glucocorticoid receptor (GR) 30 6.7
sp|Q60P76|SAS6_CAEBR Spindle assembly abnormal protein 6 30 6.7
sp|P78348|BNA2_HUMAN Amiloride-sensitive cation channel 2, ... 30 6.7
>sp|Q58042|Y625_METJA Hypothetical ATP-binding protein MJ0625
Length = 336
Score = 36.2 bits (82), Expect = 0.12
Identities = 32/118 (27%), Positives = 53/118 (44%), Gaps = 7/118 (5%)
Frame = +1
Query: 433 TLLNELIERLHDRDQISQMFNLLSLFVECVDF----KCSTATEAEVFTWLGKEKDSLQFT 600
T+ N L E ++I+ + LSL E VD K + E + W+ EKD +++
Sbjct: 205 TIRNILKEEGFSEEEINYCLDYLSLPYEIVDLIENKKLGLSVEETIRQWINIEKDKIKYL 264
Query: 601 IDYSKRVLPELLAENNITLEKYE---RVMFKLSDLLGRLKDFKFDLFSEESFYGSENG 765
ID + EL L K++ ++ ++ +K FKF + +E FY NG
Sbjct: 265 IDTTDLDEEELYK----VLSKFKDKIKISYEKEVKKEEMKYFKFLIKNEILFYDVING 318
>sp|Q5FIX8|Y1527_LACAC Hypothetical UPF0348 protein LBA1527
Length = 383
Score = 33.5 bits (75), Expect = 0.79
Identities = 33/116 (28%), Positives = 49/116 (42%), Gaps = 7/116 (6%)
Frame = +1
Query: 142 DLINSVHWFSQN----ITKSDLFHR--LLQLILKYVDFSTETELKSRIIDSFHRVFEMMT 303
D N +W +N + K ++ LL LKY ++S I+ R+++M
Sbjct: 208 DTSNLKYWMPKNEANILAKQKVYPNWNLLYPFLKY-------RIESSSIEDLRRIYQMSE 260
Query: 304 -IEYRFVMEPQIVPPFVELLRRIDDGDLFWKYIDYMCQRGLVLPTLLNELIERLHD 468
+EY+ E + F E LRRI K Y R L L TLLN + + D
Sbjct: 261 GLEYKMKQEIHLARDFTEFLRRIKS-----KRYTYARLRRLSLYTLLNVTYDDMLD 311
>sp|P06775|HIP1_YEAST Histidine permease
Length = 603
Score = 33.1 bits (74), Expect = 1.0
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Frame = +1
Query: 403 YMCQRGLVLPTLLNELIERLHDRDQISQMFN--LLSLFVECVDFKCSTATEAEVFTWL 570
Y C R +V + L + L+ D+ + N LL+LF + F ++ +AEVFTWL
Sbjct: 395 YACSRCMVAMAHIGNLPKFLNRVDKRGRPMNAILLTLFFGLLSFVAASDKQAEVFTWL 452
>sp|P36431|SYP_CHLTR Prolyl-tRNA synthetase (Proline--tRNA ligase) (ProRS)
Length = 581
Score = 31.6 bits (70), Expect = 3.0
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = -3
Query: 396 IFPEQITIIDSPQQLHERRNNLRFHDESIFDRHHFKYPMERID 268
+ + T DSP+Q+ E+ LR + IFDR + KY + D
Sbjct: 158 LMEDSYTFSDSPEQMEEQYAKLRLAYQRIFDRLNLKYVIVAAD 200
>sp|Q9PK01|SYP_CHLMU Prolyl-tRNA synthetase (Proline--tRNA ligase) (ProRS)
Length = 579
Score = 31.6 bits (70), Expect = 3.0
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = -3
Query: 396 IFPEQITIIDSPQQLHERRNNLRFHDESIFDRHHFKYPMERID 268
+ + T DSP+Q+ E+ LR + IFDR + KY + D
Sbjct: 158 LMEDSYTFSDSPEQMEEQYAKLRLAYQRIFDRLNLKYVIVTAD 200
>sp|P15918|RAG1_HUMAN V(D)J recombination-activating protein 1 (RAG-1) (RING finger
protein 74)
Length = 1043
Score = 31.2 bits (69), Expect = 3.9
Identities = 19/67 (28%), Positives = 25/67 (37%), Gaps = 17/67 (25%)
Frame = +2
Query: 575 RRKIRCNSLSITpreFCRNCW-----------------RKIILRWKNTKGSCSNCRISWE 703
R ++ + SI P EFC NCW R + + W SC C +
Sbjct: 160 RIDVKADVDSIHPTEFCHNCWSIMHRKFSSAPCEVYFPRNVTMEWHPHTPSCDICNTARR 219
Query: 704 G*KILSL 724
G K SL
Sbjct: 220 GLKRKSL 226
>sp|P26361|CFTR_MOUSE Cystic fibrosis transmembrane conductance regulator (CFTR)
(cAMP-dependent chloride channel)
Length = 1476
Score = 30.4 bits (67), Expect = 6.7
Identities = 20/89 (22%), Positives = 44/89 (49%), Gaps = 2/89 (2%)
Frame = +1
Query: 142 DLINSVHWFSQNITKSDLFHRLLQLILKYVDFSTETELKSRIIDSFHR--VFEMMTIEYR 315
++++++ W + +D R + + K++D TE + ++II R +++ I+
Sbjct: 1133 NIMSTLQWAVNSSIDTDSLMRSVSRVFKFIDIQTEESMYTQIIKELpreGSSDVLVIKNE 1192
Query: 316 FVMEPQIVPPFVELLRRIDDGDLFWKYID 402
V + I P E++ + DL KY+D
Sbjct: 1193 HVKKSDIWPSGGEMVVK----DLTVKYMD 1217
>sp|Q95267|GCR_TUPGB Glucocorticoid receptor (GR)
Length = 776
Score = 30.4 bits (67), Expect = 6.7
Identities = 18/38 (47%), Positives = 21/38 (55%)
Frame = -1
Query: 650 ILFSANNSGRTLLE*SIVNCSESFSFPSQVKTSASVAV 537
I S+ + LLE SI N + S S P K SASVAV
Sbjct: 110 ITLSSGETNLQLLEESIANLNRSTSVPEHPKISASVAV 147
>sp|Q60P76|SAS6_CAEBR Spindle assembly abnormal protein 6
Length = 497
Score = 30.4 bits (67), Expect = 6.7
Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Frame = -3
Query: 555 LRLCRRRAFKIDTFHEQTEQIEHLADLIAIVEPLDQLVEEGRQNESALAHVIDIFPEQIT 376
L++C ++ KI T H T+++ L +A +E +Q +E+ L I+ E+I
Sbjct: 179 LKICSSQSTKIATLHRSTDELAALKTKVAEMEKRNQSIED-------LEKKIEEQEERIR 231
Query: 375 IIDSPQQL-HERRNNLR 328
++ +L E R N+R
Sbjct: 232 EMEDELELVKEERENIR 248
>sp|P78348|BNA2_HUMAN Amiloride-sensitive cation channel 2, neuronal (Brain sodium
channel 2) (BNaC2)
Length = 574
Score = 30.4 bits (67), Expect = 6.7
Identities = 18/62 (29%), Positives = 32/62 (51%)
Frame = +1
Query: 16 GNLGVVFSNLKIWVPYYFHLNNVSVELLIDNIASTSSTHFIPDLINSVHWFSQNITKSDL 195
G+L V+ V YYFH ++V+ +D +A++ T L N + ++K+DL
Sbjct: 52 GSLAVLLCVCTERVQYYFHYHHVTK---LDEVAASQLTFPAVTLCNLNEFRFSQVSKNDL 108
Query: 196 FH 201
+H
Sbjct: 109 YH 110
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 99,040,562
Number of Sequences: 369166
Number of extensions: 2070782
Number of successful extensions: 6763
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6451
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6760
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8646143400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)