Planaria EST Database

DrC_00830

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00830
         (561 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P39911|YPHF_BACSU  Hypothetical protein yphF (ORF1)             36   0.057
sp|Q74IY4|Y1326_LACJO  Hypothetical UPF0085 protein LJ1326         30   4.1  
sp|Q58290|Y880_METJA  Hypothetical protein MJ0880                  30   4.1  

>sp|P39911|YPHF_BACSU Hypothetical protein yphF (ORF1)
          Length = 244

 Score = 36.2 bits (82), Expect = 0.057
 Identities = 18/57 (31%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
 Frame = -2

Query: 263 LILLRSKIHPNTGRSSLNSFPMQKQLVEKQHQISEFIRINRGIL--QDSLLNVSMYQ 99
           ++ L   ++PN  +SS+++ P Q QL + Q  + EF + N G+L  Q   ++  +YQ
Sbjct: 13  VVFLSGCLYPNERKSSVHAIPYQDQLKQVQSAVDEFQKANGGLLPIQTKDMSTPLYQ 69

>sp|Q74IY4|Y1326_LACJO Hypothetical UPF0085 protein LJ1326
          Length = 280

 Score = 30.0 bits (66), Expect = 4.1
 Identities = 18/59 (30%), Positives = 32/59 (54%)
 Frame = +1

Query: 178 FSTNCFCIGKLFSELLPVFGCILLLNSINKTENVEINKFSNRNCYDYLIDLLAGTIVSI 354
           F TN   + K+FSE+      ++    I++ E + + KF+  +   Y +DLL+G I +I
Sbjct: 48  FITNREKLEKVFSEITEFENVLIAFTLIHEDEQLAVIKFAREHNMKY-VDLLSGVIDNI 105

>sp|Q58290|Y880_METJA Hypothetical protein MJ0880
          Length = 308

 Score = 30.0 bits (66), Expect = 4.1
 Identities = 23/86 (26%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
 Frame = -2

Query: 257 LLRSKIHPNTGRSSLNSFPMQKQLVEKQHQISEFIRINRGILQDSLLNVSMYQIRNIKPN 78
           LL + I+P  G+S L+ F  + ++ EK+  ++  I     IL +S+  V +  +  +   
Sbjct: 54  LLGNFINPTVGKSMLSGFYKENKVNEKEVIVTTIISPLPTILGESVFRVQL-PLAVVILG 112

Query: 77  YK--SLYSDIDCRDCFMLLIVGQLYA 6
           YK   +Y  ++    F+  ++G LYA
Sbjct: 113 YKLGLIYVSLNVISGFLQALIGILYA 138

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,486,421
Number of Sequences: 369166
Number of extensions: 1043369
Number of successful extensions: 2972
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2928
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2972
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 4029688280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00830

  1. Dr_sW_021_C19
  2. Dr_sW_027_H24