Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_021_C19
(560 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P18948|VIT6_CAEEL Vitellogenin 6 precursor 30 3.1
sp|Q8N103|TAGAP_HUMAN T-cell activation Rho GTPase-activati... 30 4.1
sp|Q74IY4|Y1326_LACJO Hypothetical UPF0085 protein LJ1326 30 4.1
>sp|P18948|VIT6_CAEEL Vitellogenin 6 precursor
Length = 1650
Score = 30.4 bits (67), Expect = 3.1
Identities = 16/59 (27%), Positives = 31/59 (52%)
Frame = -2
Query: 214 LNSFPMQKQLVEKQHQISEFIRTIEEFSKTRCSMSVCIKLETLNQIINRYIPISIAETA 38
L+ +P++K ++ +QH+ + + IE F + R M I+ + +NR P I +A
Sbjct: 550 LSVYPLEKIILNEQHETTIRTQAIESFRRLRTQMPTKIQRVLMPVYLNRQQPQHIRMSA 608
>sp|Q8N103|TAGAP_HUMAN T-cell activation Rho GTPase-activating protein (T-cell activation
GTPase-activating protein)
Length = 731
Score = 30.0 bits (66), Expect = 4.1
Identities = 19/65 (29%), Positives = 32/65 (49%)
Frame = +3
Query: 120 QRVLENSSIVLINSLI*CCFSTNCFCIGKLFSELLPVFGCILLLNSINKTENVEINKFSN 299
Q+ L N L+ LI NCF ++F E +PV I +S+ T++ +++ N
Sbjct: 255 QKDLNNKVKTLVEFLI-----DNCF---EIFGENIPVHSSITSDDSLEHTDSSDVSTLQN 306
Query: 300 RNCYD 314
+ YD
Sbjct: 307 DSAYD 311
>sp|Q74IY4|Y1326_LACJO Hypothetical UPF0085 protein LJ1326
Length = 280
Score = 30.0 bits (66), Expect = 4.1
Identities = 18/59 (30%), Positives = 32/59 (54%)
Frame = +3
Query: 177 FSTNCFCIGKLFSELLPVFGCILLLNSINKTENVEINKFSNRNCYDYLIDLLAGTIVSI 353
F TN + K+FSE+ ++ I++ E + + KF+ + Y +DLL+G I +I
Sbjct: 48 FITNREKLEKVFSEITEFENVLIAFTLIHEDEQLAVIKFAREHNMKY-VDLLSGVIDNI 105
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,149,800
Number of Sequences: 369166
Number of extensions: 1060911
Number of successful extensions: 2884
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2848
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2884
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 4029688280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)