Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_027_H24
(493 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P39911|YPHF_BACSU Hypothetical protein yphF (ORF1) 36 0.043
sp|Q10487|YDFG_SCHPO Putative transporter C17C9.16c 30 4.0
sp|Q74IY4|Y1326_LACJO Hypothetical UPF0085 protein LJ1326 28 8.9
sp|Q39610|DYHA_CHLRE Dynein alpha chain, flagellar outer ar... 28 8.9
>sp|P39911|YPHF_BACSU Hypothetical protein yphF (ORF1)
Length = 244
Score = 36.2 bits (82), Expect = 0.043
Identities = 18/57 (31%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Frame = -3
Query: 197 LILLRSKIHPNTGRSSLNSFPMQKQLVEKQHQISEFIRINRGIL--QDSLLNVSMYQ 33
++ L ++PN +SS+++ P Q QL + Q + EF + N G+L Q ++ +YQ
Sbjct: 13 VVFLSGCLYPNERKSSVHAIPYQDQLKQVQSAVDEFQKANGGLLPIQTKDMSTPLYQ 69
>sp|Q10487|YDFG_SCHPO Putative transporter C17C9.16c
Length = 531
Score = 29.6 bits (65), Expect = 4.0
Identities = 18/59 (30%), Positives = 29/59 (49%)
Frame = -1
Query: 463 PLYKELFFATA*SNKSSFRLLRVIFQYLSTNFQWILLSISAANLTFNTIKFAGSQTFDR 287
P+ LF+A+ SF L + +FQYL+ + + S+ A N F + A S + R
Sbjct: 429 PIVGTLFYASG-----SFLLFQSMFQYLAAAYPKYVASVFAGNALFRSSMAAASPLYAR 482
>sp|Q74IY4|Y1326_LACJO Hypothetical UPF0085 protein LJ1326
Length = 280
Score = 28.5 bits (62), Expect = 8.9
Identities = 18/59 (30%), Positives = 32/59 (54%)
Frame = +1
Query: 112 FSTNCFCIGKLFSELLPVFGCILLLNSINKTENVEINKFSNCNCYDYLIDLLAGTIVSI 288
F TN + K+FSE+ ++ I++ E + + KF+ + Y +DLL+G I +I
Sbjct: 48 FITNREKLEKVFSEITEFENVLIAFTLIHEDEQLAVIKFAREHNMKY-VDLLSGVIDNI 105
>sp|Q39610|DYHA_CHLRE Dynein alpha chain, flagellar outer arm (DHC alpha)
Length = 4499
Score = 28.5 bits (62), Expect = 8.9
Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 8/41 (19%)
Frame = +2
Query: 329 CQICCRNR--------QQYPLEICRQVLENYSQESKRGFVR 427
C CC Q+ LEIC++ L +Y + +R F R
Sbjct: 1412 CVSCCNREGLYANLETQERELEICKKALNDYMESKRRAFPR 1452
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,383,939
Number of Sequences: 369166
Number of extensions: 899462
Number of successful extensions: 2804
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2730
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2804
length of database: 68,354,980
effective HSP length: 102
effective length of database: 49,512,010
effective search space used: 3020232610
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)