Planaria EST Database

DrC_00811

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00811
         (994 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9UHV9|PFD2_HUMAN  Prefoldin subunit 2                         108   2e-23
sp|O70591|PFD2_MOUSE  Prefoldin subunit 2                         108   2e-23
sp|Q9VTE5|PFD2_DROME  Probable prefoldin subunit 2                105   2e-22
sp|Q9LJ98|PFD2_ARATH  Probable prefoldin subunit 2                 83   1e-15
sp|Q9N5M2|PFD2_CAEEL  Probable prefoldin subunit 2                 68   4e-11
sp|P40005|PFD2_YEAST  Prefoldin subunit 2                          57   8e-08
sp|Q9UTC9|PFD2_SCHPO  Probable prefoldin subunit 2                 56   2e-07
sp|Q8TYC7|PFDB_METKA  Prefoldin beta subunit (GimC beta subu...    48   4e-05
sp|Q9VW56|PFD6_DROME  Probable prefoldin subunit 6                 41   0.006
sp|Q00816|HEX2_YEAST  Protein HEX2 (Protein SRN1) (Protein R...    35   0.25 

>sp|Q9UHV9|PFD2_HUMAN Prefoldin subunit 2
          Length = 154

 Score =  108 bits (271), Expect = 2e-23
 Identities = 51/108 (47%), Positives = 72/108 (66%)
 Frame = +3

Query: 534 KNAKSQQEIFTELQNMLMEQKAMAGKLSELEMELREHGLVIKVLSEANSDRKCFRTLGGV 713
           K A S +++      +  EQ+ +A K +ELEMEL EH LVI  L E +  RKC+R +GGV
Sbjct: 18  KGAVSAEQVIAGFNRLRQEQRGLASKAAELEMELNEHSLVIDTLKEVDETRKCYRMVGGV 77

Query: 714 LVEQTVKEVLPCLQENEEQLKKMIEVINNNCNQKTKDIIAFKEKHGIK 857
           LVE+TVKEVLP L+ N+EQ++K+IE +      K K++  F+EKH I+
Sbjct: 78  LVERTVKEVLPALENNKEQIQKIIETLTQQLQAKGKELNEFREKHNIR 125

>sp|O70591|PFD2_MOUSE Prefoldin subunit 2
          Length = 154

 Score =  108 bits (270), Expect = 2e-23
 Identities = 51/108 (47%), Positives = 73/108 (67%)
 Frame = +3

Query: 534 KNAKSQQEIFTELQNMLMEQKAMAGKLSELEMELREHGLVIKVLSEANSDRKCFRTLGGV 713
           K A S +++      +  EQ+ +A K +ELEMEL EH LVI  L E +  RKC+R +GGV
Sbjct: 18  KGAVSAEQVIAGFNRLRQEQRGLASKAAELEMELNEHSLVIDTLKEVDETRKCYRMVGGV 77

Query: 714 LVEQTVKEVLPCLQENEEQLKKMIEVINNNCNQKTKDIIAFKEKHGIK 857
           LVE+TVKEVLP L+ N+EQ++K+IE ++     K K++  F+EKH I+
Sbjct: 78  LVERTVKEVLPALEGNKEQIQKIIETLSQQLQAKGKELNEFREKHNIR 125

>sp|Q9VTE5|PFD2_DROME Probable prefoldin subunit 2
          Length = 143

 Score =  105 bits (263), Expect = 2e-22
 Identities = 53/114 (46%), Positives = 78/114 (68%)
 Frame = +3

Query: 516 MSKKSDKNAKSQQEIFTELQNMLMEQKAMAGKLSELEMELREHGLVIKVLSEANSDRKCF 695
           MS +S K A SQ+ I  + Q +  EQ+ +   L+ LEM+LREH  VI+ L  A+ +RKCF
Sbjct: 1   MSTESAKPALSQEAIVAQFQQLRNEQRNLVNSLNTLEMDLREHKTVIETLEAADPERKCF 60

Query: 696 RTLGGVLVEQTVKEVLPCLQENEEQLKKMIEVINNNCNQKTKDIIAFKEKHGIK 857
           R +GGVL E+TVKEVLP L EN++ + K I+++ N+ ++K  ++  FKE+H IK
Sbjct: 61  RQIGGVLCERTVKEVLPQLVENKDFIAKTIQMVTNDLSKKGSELNKFKEEHNIK 114

>sp|Q9LJ98|PFD2_ARATH Probable prefoldin subunit 2
          Length = 148

 Score = 83.2 bits (204), Expect = 1e-15
 Identities = 38/109 (34%), Positives = 66/109 (60%)
 Frame = +3

Query: 546 SQQEIFTELQNMLMEQKAMAGKLSELEMELREHGLVIKVLSEANSDRKCFRTLGGVLVEQ 725
           ++Q +    +    E   +   +++LEM++ EH LVI  +   +  RKCFR +GGVLVE+
Sbjct: 15  NEQAVLNMYEGKRSELSQIYSNITDLEMQVSEHSLVINAIQPLDQSRKCFRMIGGVLVER 74

Query: 726 TVKEVLPCLQENEEQLKKMIEVINNNCNQKTKDIIAFKEKHGIKFWK*E 872
           T+KEVLP +Q N++ L++++  +     +K KD+  F+ K+ I+  K E
Sbjct: 75  TIKEVLPAVQRNKDGLEEVVRKLYETLEKKKKDLTEFEAKYKIRITKQE 123

>sp|Q9N5M2|PFD2_CAEEL Probable prefoldin subunit 2
          Length = 141

 Score = 68.2 bits (165), Expect = 4e-11
 Identities = 33/105 (31%), Positives = 63/105 (60%)
 Frame = +3

Query: 543 KSQQEIFTELQNMLMEQKAMAGKLSELEMELREHGLVIKVLSEANSDRKCFRTLGGVLVE 722
           + Q+++  + + +  +Q+ +A +++ +E E RE G V++V+ +   D+KCFR +   LVE
Sbjct: 15  EEQRKVVEKFKALRDQQQDIAAEVTRIEEERREFGRVLEVIKDLEPDQKCFRLISDTLVE 74

Query: 723 QTVKEVLPCLQENEEQLKKMIEVINNNCNQKTKDIIAFKEKHGIK 857
            TVK+V+P LQ N   L  + + +N+   +K K++   K  H I+
Sbjct: 75  YTVKDVIPDLQNNIANLTIVSKQLNDQLVEKGKELNTHKTTHNIR 119

>sp|P40005|PFD2_YEAST Prefoldin subunit 2
          Length = 123

 Score = 57.0 bits (136), Expect = 8e-08
 Identities = 34/105 (32%), Positives = 55/105 (52%)
 Frame = +3

Query: 552 QEIFTELQNMLMEQKAMAGKLSELEMELREHGLVIKVLSEANSDRKCFRTLGGVLVEQTV 731
           Q  + E + +L E +    K+ EL  +  EH +VIK L +A   RKC+R +GG LVE  V
Sbjct: 21  QAKYNEYKQILEELQT---KIIELGHDKDEHTIVIKTLKDAEPTRKCYRMIGGALVESDV 77

Query: 732 KEVLPCLQENEEQLKKMIEVINNNCNQKTKDIIAFKEKHGIKFWK 866
           +  LP L+  +E ++  I  +     Q  K+   +K+ + I+  K
Sbjct: 78  QTSLPILETKKENIEGTISKMKETLIQTAKEFEKWKKDNKIQVVK 122

>sp|Q9UTC9|PFD2_SCHPO Probable prefoldin subunit 2
          Length = 114

 Score = 55.8 bits (133), Expect = 2e-07
 Identities = 30/103 (29%), Positives = 59/103 (57%)
 Frame = +3

Query: 549 QQEIFTELQNMLMEQKAMAGKLSELEMELREHGLVIKVLSEANSDRKCFRTLGGVLVEQT 728
           QQ + T+  +     + +A K+ +LE +  EH LV+  L+  +++R+CFR + GVLVE+T
Sbjct: 8   QQILQTQYNSYKSRLQQIAQKIVDLETDADEHKLVMDTLNSMDNNRRCFRMIHGVLVERT 67

Query: 729 VKEVLPCLQENEEQLKKMIEVINNNCNQKTKDIIAFKEKHGIK 857
           V  V+P L+  +E ++  +  + +   Q   +   F++ + I+
Sbjct: 68  VGTVVPILKTTQEGIQTAMNGLLDQYKQLEAEFQKFQKDNKIQ 110

>sp|Q8TYC7|PFDB_METKA Prefoldin beta subunit (GimC beta subunit)
          Length = 120

 Score = 48.1 bits (113), Expect = 4e-05
 Identities = 23/85 (27%), Positives = 49/85 (57%)
 Frame = +3

Query: 540 AKSQQEIFTELQNMLMEQKAMAGKLSELEMELREHGLVIKVLSEANSDRKCFRTLGGVLV 719
           A++ ++   +LQ +  +  ++  +  +LE++LRE    +K L E   D K ++T+GG+L+
Sbjct: 2   AQNVEQQVAQLQQLQQQLSSIVAQKQQLELQLREIERALKELDEIEEDTKVYKTVGGLLI 61

Query: 720 EQTVKEVLPCLQENEEQLKKMIEVI 794
           E    EV   L++ +E L+  ++ +
Sbjct: 62  EADRDEVKEELEDRKETLELRVKTL 86

>sp|Q9VW56|PFD6_DROME Probable prefoldin subunit 6
          Length = 125

 Score = 40.8 bits (94), Expect = 0.006
 Identities = 28/109 (25%), Positives = 49/109 (44%)
 Frame = +3

Query: 516 MSKKSDKNAKSQQEIFTELQNMLMEQKAMAGKLSELEMELREHGLVIKVLSEANSDRKCF 695
           M KKS    K  Q      QN+      M  + + LE +L E+  V+  L+    D K +
Sbjct: 1   MDKKSAALYKKMQAEIESYQNLQKSCLKMVKQRAVLESQLNENKCVLDELNLLGPDNKVY 60

Query: 696 RTLGGVLVEQTVKEVLPCLQENEEQLKKMIEVINNNCNQKTKDIIAFKE 842
           +  G VLV+Q ++E    + +  E + K ++   +      KD++  +E
Sbjct: 61  KLFGPVLVKQELEESRQNVGKRIEYISKELKSSTDALENMEKDMLKHRE 109

>sp|Q00816|HEX2_YEAST Protein HEX2 (Protein SRN1) (Protein REG1)
          Length = 1014

 Score = 35.4 bits (80), Expect = 0.25
 Identities = 25/78 (32%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
 Frame = -2

Query: 330 KSTYQEIRDQISIENIKWIGQNSIGLLSNIKESLSAKYKVEVGQNPSVEEVNQND-EDST 154
           KS + + +D  +I N   +G+NS G     +E L  K  + V  N S  + N++  E+ST
Sbjct: 351 KSQHSDKKDNSTIPNP--VGENSNGGGDKGEEDLHLKSALHVQNNRSTAQSNKSILENST 408

Query: 153 HDEEANLRDYLSTNDDHQ 100
           +D +ANL   L++ D+++
Sbjct: 409 NDRKANLDQNLNSPDNNR 426

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 104,947,555
Number of Sequences: 369166
Number of extensions: 2043633
Number of successful extensions: 6849
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6469
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6834
length of database: 68,354,980
effective HSP length: 111
effective length of database: 47,849,395
effective search space used: 10479017505
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00811

  1. Dr_sW_020_M18
  2. Dr_sW_001_C17
  3. Dr_sW_020_N11