Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_020_N11
(512 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9UHV9|PFD2_HUMAN Prefoldin subunit 2 117 1e-26
sp|O70591|PFD2_MOUSE Prefoldin subunit 2 117 2e-26
sp|Q9VTE5|PFD2_DROME Probable prefoldin subunit 2 107 2e-23
sp|Q9LJ98|PFD2_ARATH Probable prefoldin subunit 2 89 5e-18
sp|Q9N5M2|PFD2_CAEEL Probable prefoldin subunit 2 72 8e-13
sp|P40005|PFD2_YEAST Prefoldin subunit 2 57 3e-08
sp|Q9UTC9|PFD2_SCHPO Probable prefoldin subunit 2 56 6e-08
sp|Q8TYC7|PFDB_METKA Prefoldin beta subunit (GimC beta subu... 48 1e-05
sp|Q9VW56|PFD6_DROME Probable prefoldin subunit 6 41 0.002
sp|Q58316|Y906_METJA Hypothetical protein MJ0906 36 0.047
>sp|Q9UHV9|PFD2_HUMAN Prefoldin subunit 2
Length = 154
Score = 117 bits (294), Expect = 1e-26
Identities = 63/139 (45%), Positives = 87/139 (62%), Gaps = 7/139 (5%)
Frame = +3
Query: 54 KNAKSQQEIFTELQNMLMEQKAMAGKLSELEMELREHGLVIKVLSEANSDRKCFRTLGGV 233
K A S +++ + EQ+ +A K +ELEMEL EH LVI L E + RKC+R +GGV
Sbjct: 18 KGAVSAEQVIAGFNRLRQEQRGLASKAAELEMELNEHSLVIDTLKEVDETRKCYRMVGGV 77
Query: 234 LVEQTVKEVLPCLQENEEQLKKMIEVINNNCNQKTKDIIAFKEKHGIKFGSEKPDQKVET 413
LVE+TVKEVLP L+ N+EQ++K+IE + K K++ F+EKH I+ E D+K
Sbjct: 78 LVERTVKEVLPALENNKEQIQKIIETLTQQLQAKGKELNEFREKHNIRLMGE--DEKPAA 135
Query: 414 KET-------AASSGVLVS 449
KE A+S+GVLVS
Sbjct: 136 KENSEGAGAKASSAGVLVS 154
>sp|O70591|PFD2_MOUSE Prefoldin subunit 2
Length = 154
Score = 117 bits (293), Expect = 2e-26
Identities = 63/139 (45%), Positives = 88/139 (63%), Gaps = 7/139 (5%)
Frame = +3
Query: 54 KNAKSQQEIFTELQNMLMEQKAMAGKLSELEMELREHGLVIKVLSEANSDRKCFRTLGGV 233
K A S +++ + EQ+ +A K +ELEMEL EH LVI L E + RKC+R +GGV
Sbjct: 18 KGAVSAEQVIAGFNRLRQEQRGLASKAAELEMELNEHSLVIDTLKEVDETRKCYRMVGGV 77
Query: 234 LVEQTVKEVLPCLQENEEQLKKMIEVINNNCNQKTKDIIAFKEKHGIKFGSEKPDQKVET 413
LVE+TVKEVLP L+ N+EQ++K+IE ++ K K++ F+EKH I+ E D+K
Sbjct: 78 LVERTVKEVLPALEGNKEQIQKIIETLSQQLQAKGKELNEFREKHNIRLMGE--DEKPAA 135
Query: 414 KET-------AASSGVLVS 449
KE A+S+GVLVS
Sbjct: 136 KENSEGAGAKASSAGVLVS 154
>sp|Q9VTE5|PFD2_DROME Probable prefoldin subunit 2
Length = 143
Score = 107 bits (266), Expect = 2e-23
Identities = 54/118 (45%), Positives = 79/118 (66%)
Frame = +3
Query: 36 MSKKSDKNAKSQQEIFTELQNMLMEQKAMAGKLSELEMELREHGLVIKVLSEANSDRKCF 215
MS +S K A SQ+ I + Q + EQ+ + L+ LEM+LREH VI+ L A+ +RKCF
Sbjct: 1 MSTESAKPALSQEAIVAQFQQLRNEQRNLVNSLNTLEMDLREHKTVIETLEAADPERKCF 60
Query: 216 RTLGGVLVEQTVKEVLPCLQENEEQLKKMIEVINNNCNQKTKDIIAFKEKHGIKFGSE 389
R +GGVL E+TVKEVLP L EN++ + K I+++ N+ ++K ++ FKE+H IK E
Sbjct: 61 RQIGGVLCERTVKEVLPQLVENKDFIAKTIQMVTNDLSKKGSELNKFKEEHNIKIRGE 118
>sp|Q9LJ98|PFD2_ARATH Probable prefoldin subunit 2
Length = 148
Score = 89.4 bits (220), Expect = 5e-18
Identities = 41/127 (32%), Positives = 76/127 (59%)
Frame = +3
Query: 66 SQQEIFTELQNMLMEQKAMAGKLSELEMELREHGLVIKVLSEANSDRKCFRTLGGVLVEQ 245
++Q + + E + +++LEM++ EH LVI + + RKCFR +GGVLVE+
Sbjct: 15 NEQAVLNMYEGKRSELSQIYSNITDLEMQVSEHSLVINAIQPLDQSRKCFRMIGGVLVER 74
Query: 246 TVKEVLPCLQENEEQLKKMIEVINNNCNQKTKDIIAFKEKHGIKFGSEKPDQKVETKETA 425
T+KEVLP +Q N++ L++++ + +K KD+ F+ K+ I+ ++ +++ K+
Sbjct: 75 TIKEVLPAVQRNKDGLEEVVRKLYETLEKKKKDLTEFEAKYKIRITKQEDNKEGGNKKEG 134
Query: 426 ASSGVLV 446
+ GVLV
Sbjct: 135 NAQGVLV 141
>sp|Q9N5M2|PFD2_CAEEL Probable prefoldin subunit 2
Length = 141
Score = 72.0 bits (175), Expect = 8e-13
Identities = 36/119 (30%), Positives = 69/119 (57%)
Frame = +3
Query: 63 KSQQEIFTELQNMLMEQKAMAGKLSELEMELREHGLVIKVLSEANSDRKCFRTLGGVLVE 242
+ Q+++ + + + +Q+ +A +++ +E E RE G V++V+ + D+KCFR + LVE
Sbjct: 15 EEQRKVVEKFKALRDQQQDIAAEVTRIEEERREFGRVLEVIKDLEPDQKCFRLISDTLVE 74
Query: 243 QTVKEVLPCLQENEEQLKKMIEVINNNCNQKTKDIIAFKEKHGIKFGSEKPDQKVETKE 419
TVK+V+P LQ N L + + +N+ +K K++ K H I+ +EK ++ E
Sbjct: 75 YTVKDVIPDLQNNIANLTIVSKQLNDQLVEKGKELNTHKTTHNIRLLTEKESAELRKAE 133
>sp|P40005|PFD2_YEAST Prefoldin subunit 2
Length = 123
Score = 56.6 bits (135), Expect = 3e-08
Identities = 33/102 (32%), Positives = 54/102 (52%)
Frame = +3
Query: 72 QEIFTELQNMLMEQKAMAGKLSELEMELREHGLVIKVLSEANSDRKCFRTLGGVLVEQTV 251
Q + E + +L E + K+ EL + EH +VIK L +A RKC+R +GG LVE V
Sbjct: 21 QAKYNEYKQILEELQT---KIIELGHDKDEHTIVIKTLKDAEPTRKCYRMIGGALVESDV 77
Query: 252 KEVLPCLQENEEQLKKMIEVINNNCNQKTKDIIAFKEKHGIK 377
+ LP L+ +E ++ I + Q K+ +K+ + I+
Sbjct: 78 QTSLPILETKKENIEGTISKMKETLIQTAKEFEKWKKDNKIQ 119
>sp|Q9UTC9|PFD2_SCHPO Probable prefoldin subunit 2
Length = 114
Score = 55.8 bits (133), Expect = 6e-08
Identities = 30/103 (29%), Positives = 59/103 (57%)
Frame = +3
Query: 69 QQEIFTELQNMLMEQKAMAGKLSELEMELREHGLVIKVLSEANSDRKCFRTLGGVLVEQT 248
QQ + T+ + + +A K+ +LE + EH LV+ L+ +++R+CFR + GVLVE+T
Sbjct: 8 QQILQTQYNSYKSRLQQIAQKIVDLETDADEHKLVMDTLNSMDNNRRCFRMIHGVLVERT 67
Query: 249 VKEVLPCLQENEEQLKKMIEVINNNCNQKTKDIIAFKEKHGIK 377
V V+P L+ +E ++ + + + Q + F++ + I+
Sbjct: 68 VGTVVPILKTTQEGIQTAMNGLLDQYKQLEAEFQKFQKDNKIQ 110
>sp|Q8TYC7|PFDB_METKA Prefoldin beta subunit (GimC beta subunit)
Length = 120
Score = 48.1 bits (113), Expect = 1e-05
Identities = 23/85 (27%), Positives = 49/85 (57%)
Frame = +3
Query: 60 AKSQQEIFTELQNMLMEQKAMAGKLSELEMELREHGLVIKVLSEANSDRKCFRTLGGVLV 239
A++ ++ +LQ + + ++ + +LE++LRE +K L E D K ++T+GG+L+
Sbjct: 2 AQNVEQQVAQLQQLQQQLSSIVAQKQQLELQLREIERALKELDEIEEDTKVYKTVGGLLI 61
Query: 240 EQTVKEVLPCLQENEEQLKKMIEVI 314
E EV L++ +E L+ ++ +
Sbjct: 62 EADRDEVKEELEDRKETLELRVKTL 86
>sp|Q9VW56|PFD6_DROME Probable prefoldin subunit 6
Length = 125
Score = 40.8 bits (94), Expect = 0.002
Identities = 28/109 (25%), Positives = 49/109 (44%)
Frame = +3
Query: 36 MSKKSDKNAKSQQEIFTELQNMLMEQKAMAGKLSELEMELREHGLVIKVLSEANSDRKCF 215
M KKS K Q QN+ M + + LE +L E+ V+ L+ D K +
Sbjct: 1 MDKKSAALYKKMQAEIESYQNLQKSCLKMVKQRAVLESQLNENKCVLDELNLLGPDNKVY 60
Query: 216 RTLGGVLVEQTVKEVLPCLQENEEQLKKMIEVINNNCNQKTKDIIAFKE 362
+ G VLV+Q ++E + + E + K ++ + KD++ +E
Sbjct: 61 KLFGPVLVKQELEESRQNVGKRIEYISKELKSSTDALENMEKDMLKHRE 109
>sp|Q58316|Y906_METJA Hypothetical protein MJ0906
Length = 366
Score = 36.2 bits (82), Expect = 0.047
Identities = 15/50 (30%), Positives = 32/50 (64%)
Frame = +3
Query: 234 LVEQTVKEVLPCLQENEEQLKKMIEVINNNCNQKTKDIIAFKEKHGIKFG 383
++++ + EV+ + +E +LKK IE+I+N + +++ KHG++FG
Sbjct: 26 ILDEIISEVINDIMPSEIKLKKKIEMIDNTIEYLSYELLVTFIKHGVEFG 75
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,082,666
Number of Sequences: 369166
Number of extensions: 887798
Number of successful extensions: 3593
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3471
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3589
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3304927425
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)