Planaria EST Database

DrC_00793

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00793
         (1208 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P32114|PAX2_MOUSE  Paired box protein Pax-2                     47   1e-04
sp|Q02962|PAX2_HUMAN  Paired box protein Pax-2                     47   1e-04
sp|Q02548|PAX5_HUMAN  Paired box protein Pax-5 (B-cell-speci...    45   3e-04
sp|Q02650|PAX5_MOUSE  Paired box protein Pax-5 (B-cell-speci...    45   3e-04
sp|P09083|GSBN_DROME  Gooseberry neuro protein (Gooseberry p...    45   3e-04
sp|Q90268|PAX2A_BRARE  Paired box protein Pax-2a (Pax[Zf-b])...    45   3e-04
sp|P23760|PAX3_HUMAN  Paired box protein Pax-3 (HUP2)              44   7e-04
sp|P24610|PAX3_MOUSE  Paired box protein Pax-3                     44   7e-04
sp|Q06710|PAX8_HUMAN  Paired box protein Pax-8                     44   0.001
sp|P51974|PAX8_RAT  Paired box protein Pax-8                       44   0.001

>sp|P32114|PAX2_MOUSE Paired box protein Pax-2
          Length = 415

 Score = 47.0 bits (110), Expect = 1e-04
 Identities = 28/110 (25%), Positives = 55/110 (50%), Gaps = 5/110 (4%)
 Frame = +1

Query: 220 ISSIDKVRIVNSYENGEDMNTVARLLNINYGSLKNVLYRFNKNGSISTGKIGGYRKKVLN 399
           +  + + RIV     G     ++R L +++G +  +L R+ + GSI  G IGG + KV  
Sbjct: 32  LPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETGSIKPGVIGGSKPKVAT 91

Query: 400 DEIGDVLLAQIDENPCMTLREMKIFL-----AENSYIASATTISKYLRNR 534
            ++ D +     +NP M   E++  L      +N  + S ++I++ +R +
Sbjct: 92  PKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSVSSINRIIRTK 141

>sp|Q02962|PAX2_HUMAN Paired box protein Pax-2
          Length = 416

 Score = 47.0 bits (110), Expect = 1e-04
 Identities = 28/110 (25%), Positives = 55/110 (50%), Gaps = 5/110 (4%)
 Frame = +1

Query: 220 ISSIDKVRIVNSYENGEDMNTVARLLNINYGSLKNVLYRFNKNGSISTGKIGGYRKKVLN 399
           +  + + RIV     G     ++R L +++G +  +L R+ + GSI  G IGG + KV  
Sbjct: 33  LPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETGSIKPGVIGGSKPKVAT 92

Query: 400 DEIGDVLLAQIDENPCMTLREMKIFL-----AENSYIASATTISKYLRNR 534
            ++ D +     +NP M   E++  L      +N  + S ++I++ +R +
Sbjct: 93  PKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSVSSINRIIRTK 142

>sp|Q02548|PAX5_HUMAN Paired box protein Pax-5 (B-cell-specific transcription factor)
           (BSAP)
          Length = 391

 Score = 45.4 bits (106), Expect = 3e-04
 Identities = 27/110 (24%), Positives = 55/110 (50%), Gaps = 5/110 (4%)
 Frame = +1

Query: 220 ISSIDKVRIVNSYENGEDMNTVARLLNINYGSLKNVLYRFNKNGSISTGKIGGYRKKVLN 399
           +  + + RIV     G     ++R L +++G +  +L R+ + GSI  G IGG + KV  
Sbjct: 33  LPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETGSIKPGVIGGSKPKVAT 92

Query: 400 DEIGDVLLAQIDENPCMTLREMKIFL-----AENSYIASATTISKYLRNR 534
            ++ + +     +NP M   E++  L      +N  + S ++I++ +R +
Sbjct: 93  PKVVEKIAEYKRQNPTMFAWEIRDRLLAERVCDNDTVPSVSSINRIIRTK 142

>sp|Q02650|PAX5_MOUSE Paired box protein Pax-5 (B-cell-specific transcription factor)
           (BSAP)
          Length = 391

 Score = 45.4 bits (106), Expect = 3e-04
 Identities = 27/110 (24%), Positives = 55/110 (50%), Gaps = 5/110 (4%)
 Frame = +1

Query: 220 ISSIDKVRIVNSYENGEDMNTVARLLNINYGSLKNVLYRFNKNGSISTGKIGGYRKKVLN 399
           +  + + RIV     G     ++R L +++G +  +L R+ + GSI  G IGG + KV  
Sbjct: 33  LPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETGSIKPGVIGGSKPKVAT 92

Query: 400 DEIGDVLLAQIDENPCMTLREMKIFL-----AENSYIASATTISKYLRNR 534
            ++ + +     +NP M   E++  L      +N  + S ++I++ +R +
Sbjct: 93  PKVVEKIAEYKRQNPTMFAWEIRDRLLAERVCDNDTVPSVSSINRIIRTK 142

>sp|P09083|GSBN_DROME Gooseberry neuro protein (Gooseberry proximal protein) (BSH4)
          Length = 449

 Score = 45.4 bits (106), Expect = 3e-04
 Identities = 29/100 (29%), Positives = 53/100 (53%), Gaps = 2/100 (2%)
 Frame = +1

Query: 235 KVRIVNSYENGEDMNTVARLLNINYGSLKNVLYRFNKNGSISTGKIGGYRKKVLNDEIGD 414
           +++IV    +G     ++R L +++G +  +L R+ + GSI  G IGG + KV + EI  
Sbjct: 42  RLKIVEMAASGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPKVTSPEIET 101

Query: 415 VLLAQIDENPCMTLREMKIFLAENSYI--ASATTISKYLR 528
            +     ENP +   E++  L +  +    S ++IS+ LR
Sbjct: 102 RIDELRKENPSIFSWEIREKLIKEGFADPPSTSSISRLLR 141

>sp|Q90268|PAX2A_BRARE Paired box protein Pax-2a (Pax[Zf-b]) (No isthmus protein)
          Length = 410

 Score = 45.4 bits (106), Expect = 3e-04
 Identities = 27/110 (24%), Positives = 55/110 (50%), Gaps = 5/110 (4%)
 Frame = +1

Query: 220 ISSIDKVRIVNSYENGEDMNTVARLLNINYGSLKNVLYRFNKNGSISTGKIGGYRKKVLN 399
           +  + + RIV     G     ++R L +++G +  +L R+ + GSI  G IGG + KV  
Sbjct: 36  LPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETGSIKPGVIGGSKPKVAT 95

Query: 400 DEIGDVLLAQIDENPCMTLREMKIFL-----AENSYIASATTISKYLRNR 534
            ++ + +     +NP M   E++  L      +N  + S ++I++ +R +
Sbjct: 96  PKVVEKIAEYKRQNPTMFAWEIRDRLLAEGVCDNDTVPSVSSINRIIRTK 145

>sp|P23760|PAX3_HUMAN Paired box protein Pax-3 (HUP2)
          Length = 479

 Score = 44.3 bits (103), Expect = 7e-04
 Identities = 29/105 (27%), Positives = 55/105 (52%), Gaps = 6/105 (5%)
 Frame = +1

Query: 241 RIVNSYENGEDMNTVARLLNINYGSLKNVLYRFNKNGSISTGKIGGYR-KKVLNDEIGDV 417
           +IV    +G     ++R L +++G +  +L R+ + GSI  G IGG + K+V   ++   
Sbjct: 58  KIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIRPGAIGGSKPKQVTTPDVEKK 117

Query: 418 LLAQIDENPCMTLRE-----MKIFLAENSYIASATTISKYLRNRF 537
           +     ENP M   E     +K  + + + + S ++IS+ LR++F
Sbjct: 118 IEEYKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSISRILRSKF 162

>sp|P24610|PAX3_MOUSE Paired box protein Pax-3
          Length = 479

 Score = 44.3 bits (103), Expect = 7e-04
 Identities = 29/105 (27%), Positives = 55/105 (52%), Gaps = 6/105 (5%)
 Frame = +1

Query: 241 RIVNSYENGEDMNTVARLLNINYGSLKNVLYRFNKNGSISTGKIGGYR-KKVLNDEIGDV 417
           +IV    +G     ++R L +++G +  +L R+ + GSI  G IGG + K+V   ++   
Sbjct: 58  KIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIRPGAIGGSKPKQVTTPDVEKK 117

Query: 418 LLAQIDENPCMTLRE-----MKIFLAENSYIASATTISKYLRNRF 537
           +     ENP M   E     +K  + + + + S ++IS+ LR++F
Sbjct: 118 IEEYKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSISRILRSKF 162

>sp|Q06710|PAX8_HUMAN Paired box protein Pax-8
          Length = 450

 Score = 43.9 bits (102), Expect = 0.001
 Identities = 27/110 (24%), Positives = 56/110 (50%), Gaps = 5/110 (4%)
 Frame = +1

Query: 220 ISSIDKVRIVNSYENGEDMNTVARLLNINYGSLKNVLYRFNKNGSISTGKIGGYRKKVLN 399
           +  + + RIV+    G     ++R L +++G +  +L R+ + GSI  G IGG + KV  
Sbjct: 26  LPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSKILGRYYETGSIRPGVIGGSKPKVAT 85

Query: 400 DEIGDVLLAQIDENPCMTLREMKIFL-----AENSYIASATTISKYLRNR 534
            ++ + +     +NP M   E++  L      +N  + S ++I++ +R +
Sbjct: 86  PKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDTVPSVSSINRIIRTK 135

>sp|P51974|PAX8_RAT Paired box protein Pax-8
          Length = 458

 Score = 43.9 bits (102), Expect = 0.001
 Identities = 27/110 (24%), Positives = 56/110 (50%), Gaps = 5/110 (4%)
 Frame = +1

Query: 220 ISSIDKVRIVNSYENGEDMNTVARLLNINYGSLKNVLYRFNKNGSISTGKIGGYRKKVLN 399
           +  + + RIV+    G     ++R L +++G +  +L R+ + GSI  G IGG + KV  
Sbjct: 26  LPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSKILGRYYETGSIRPGVIGGSKPKVAT 85

Query: 400 DEIGDVLLAQIDENPCMTLREMKIFL-----AENSYIASATTISKYLRNR 534
            ++ + +     +NP M   E++  L      +N  + S ++I++ +R +
Sbjct: 86  PKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDTVPSVSSINRIIRTK 135

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 129,937,016
Number of Sequences: 369166
Number of extensions: 2593055
Number of successful extensions: 7491
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 7112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7483
length of database: 68,354,980
effective HSP length: 113
effective length of database: 47,479,925
effective search space used: 13721698325
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00793

  1. Dr_sW_020_H12
  2. Dr_sW_026_P06
  3. Dr_sW_011_E10