Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_011_E10
(766 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q96YR5|RAD50_SULTO DNA double-strand break repair rad50 ... 36 0.100
sp|P75093|Y020_MYCPN Hypothetical helicase MG018/MG017/MG01... 32 1.4
sp|Q8EX28|SYC_MYCPE Cysteinyl-tRNA synthetase (Cysteine--tR... 31 3.2
sp|Q9L7Q2|ZMPB_STRPN Zinc metalloprotease zmpB precursor 31 3.2
sp|P10519|STRP_STRS1 Streptokinase G precursor 31 4.2
sp|Q58460|YA60_METJA Hypothetical protein MJ1060 30 5.5
sp|P34257|TC3A_CAEEL Transposable element Tc3 transposase 30 7.2
sp|P55614|Y4PE_RHISN Hypothetical 15.5 kDa protein y4pE/y4sA 30 7.2
sp|Q8CDJ8|SALF_MOUSE Stonin-1 (Stoned B-like factor) 30 7.2
sp|Q8RF47|AROB_FUSNN Bifunctional 3-dehydroquinate synthase... 30 7.2
>sp|Q96YR5|RAD50_SULTO DNA double-strand break repair rad50 ATPase
Length = 879
Score = 36.2 bits (82), Expect = 0.100
Identities = 28/79 (35%), Positives = 40/79 (50%), Gaps = 8/79 (10%)
Frame = +3
Query: 543 LNPIENYFSKIKSKLRKKLTDFNFNGNILSQYQIIRKSIEEI--------MATEKDVDLS 698
LN I N SK K + L D+N N+L+Q Q +RK IEEI + EK + L
Sbjct: 487 LNQIINKKSKEKDIAIRNLADYN---NLLTQQQELRKEIEEIENEIERLSIYHEKYIRLK 543
Query: 699 EFFNHIKTYYPECIKMENI 755
E ++K Y E +K ++
Sbjct: 544 EEEKNLKPKYEEYLKYYDV 562
>sp|P75093|Y020_MYCPN Hypothetical helicase MG018/MG017/MG016 homolog (D12_orf1030)
Length = 1030
Score = 32.3 bits (72), Expect = 1.4
Identities = 26/116 (22%), Positives = 46/116 (39%), Gaps = 1/116 (0%)
Frame = +3
Query: 177 NHLKNSIRSKQCIYIDETYCNLWTQRLKGRAPQGKSAFLQVPSRKGASIAILMAIGKSGP 356
++LKN + I + + W + APQ K +PS++ +
Sbjct: 620 SYLKNHVNLPSLIIVPASLLLNWKSEFEKFAPQIKVKVANIPSKERGEL----------- 668
Query: 357 IYFEILQGSVTQPMYQKFLLEVSLRLKPKIHYLIHDNA-SIHNDVLTTTEHHKILK 521
+E L + + +V L K + HY++ D A I ND + T+ K +K
Sbjct: 669 --YEKLTNEILIVSFNVLRSDVKLITKQRFHYVVIDEAQGIKNDSSSITKAAKKVK 722
>sp|Q8EX28|SYC_MYCPE Cysteinyl-tRNA synthetase (Cysteine--tRNA ligase) (CysRS)
Length = 439
Score = 31.2 bits (69), Expect = 3.2
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
Frame = +3
Query: 483 DVLTTTE-HHKILKLPPYSPFLNPIENYFSKIKSKLRKKLTDFN--FNGNILSQY-QIIR 650
D+L T H +K P S + IENY KI + L D + F+ +QY +I
Sbjct: 96 DILKTINIHTSNMKFPRVSDHIKDIENYIQKIVNNKFAYLVDGDVYFDTTKSNQYGKISN 155
Query: 651 KSIEEIMATEKDVD 692
K ++E++ +K D
Sbjct: 156 KKLDELLVGDKSED 169
>sp|Q9L7Q2|ZMPB_STRPN Zinc metalloprotease zmpB precursor
Length = 1906
Score = 31.2 bits (69), Expect = 3.2
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = +3
Query: 561 YFSKIKSKLRKKLTDFNFNGNILSQYQIIRKSIEEIMATEKDVD 692
YF ++K K K LT F NG+ +S Y + +E A +KD +
Sbjct: 1824 YFKEVKDKATKGLTTFEVNGSSVSSYDDLLTLFKE--AVKKDAE 1865
>sp|P10519|STRP_STRS1 Streptokinase G precursor
Length = 440
Score = 30.8 bits (68), Expect = 4.2
Identities = 34/130 (26%), Positives = 60/130 (46%), Gaps = 6/130 (4%)
Frame = +3
Query: 345 KSGPIYFEILQGSVTQPM--YQKFLLEVSLRLKPKIHYLIHDNASIHNDVLTTTEHHKIL 518
++G +YF GSVT P+ Q+FLL+ +R++P + + N + + +
Sbjct: 138 RNGKVYFADKDGSVTLPIQPVQEFLLKGHVRVRP------YKEKPVQNQAKSVDVEYTVQ 191
Query: 519 KLPPYSPFLNPIENYFSKIK-SKLRKKLT--DFNFNGNILSQYQ-IIRKSIEEIMATEKD 686
P LNP +++ +K +KL K L D + +L+Q Q I+ K+ E+D
Sbjct: 192 FTP-----LNPDDDFRPALKDTKLLKTLAIGDTITSQELLAQAQSILNKNHPGYTIYERD 246
Query: 687 VDLSEFFNHI 716
+ N I
Sbjct: 247 SSIVTHDNDI 256
>sp|Q58460|YA60_METJA Hypothetical protein MJ1060
Length = 537
Score = 30.4 bits (67), Expect = 5.5
Identities = 13/39 (33%), Positives = 25/39 (64%), Gaps = 3/39 (7%)
Frame = +3
Query: 552 IENYFSKIKSKLRKKLTDF---NFNGNILSQYQIIRKSI 659
++ + + IKSK + ++ D+ NF GN++ Y ++RK I
Sbjct: 121 LKKFTNNIKSKNKNRIVDYIMENFQGNLIMLYFLVRKII 159
>sp|P34257|TC3A_CAEEL Transposable element Tc3 transposase
Length = 329
Score = 30.0 bits (66), Expect = 7.2
Identities = 28/95 (29%), Positives = 44/95 (46%), Gaps = 12/95 (12%)
Frame = +3
Query: 312 GASIAILMAIGKSGPIYFEILQGSVTQPMYQKFL-LEVSLRLKPKIHY------LIHDNA 470
G ++ + A + + + + + YQ L LE+S L+ HY DNA
Sbjct: 177 GGTVMVWGAFTEKKKLEIQFVSSKMNSTDYQNVLELELSKYLR---HYSRKDFRFQQDNA 233
Query: 471 SIHNDVLTTTEHHKILKL-----PPYSPFLNPIEN 560
+IH +T ++ K+ K+ P SP LNPIEN
Sbjct: 234 TIHVSN-STRDYFKLKKINLLDWPARSPDLNPIEN 267
>sp|P55614|Y4PE_RHISN Hypothetical 15.5 kDa protein y4pE/y4sA
Length = 135
Score = 30.0 bits (66), Expect = 7.2
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = +3
Query: 402 QKFLLEVSLRLKPKIH-YLIHDNASIH-NDVLTTTEHHKILKLPPYSPFLNPIEN 560
Q+ L E+ + H LI D A H L ++ ++ LPP SP LNP+EN
Sbjct: 30 QEHLAEIGRSVDDGAHAVLILDQAGWHVTPKLKVPDNITLMFLPPRSPELNPVEN 84
>sp|Q8CDJ8|SALF_MOUSE Stonin-1 (Stoned B-like factor)
Length = 730
Score = 30.0 bits (66), Expect = 7.2
Identities = 19/71 (26%), Positives = 34/71 (47%)
Frame = +3
Query: 201 SKQCIYIDETYCNLWTQRLKGRAPQGKSAFLQVPSRKGASIAILMAIGKSGPIYFEILQG 380
S Q Y +T + + + G S L++P +K +M+ + GPI+ ++L G
Sbjct: 244 SMQDPYAGDTVSFVPHSLFRSQPRAGWSFMLRIPEKKN-----MMSSRQWGPIFLKVLPG 298
Query: 381 SVTQPMYQKFL 413
+ Q Y+K L
Sbjct: 299 GILQMYYEKGL 309
>sp|Q8RF47|AROB_FUSNN Bifunctional 3-dehydroquinate synthase/phosphatase [Includes:
3-dehydroquinate synthase ; Unknown phosphatase ]
Length = 664
Score = 30.0 bits (66), Expect = 7.2
Identities = 16/52 (30%), Positives = 29/52 (55%)
Frame = +3
Query: 69 ISKYLRNRFYTFKKLRYSTVEKNTDKVKELRRDYVTNHLKNSIRSKQCIYID 224
+ + L++ F T K +E N +K+K L + + N ++ SIR K+ Y+D
Sbjct: 172 MGELLKHSFLTKDKSYLEYIENNVEKIKNLDNEVLENIVEQSIRIKK-HYVD 222
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,521,550
Number of Sequences: 369166
Number of extensions: 1502856
Number of successful extensions: 4271
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4270
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 7066925600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)