Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_020_H12
(932 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P32114|PAX2_MOUSE Paired box protein Pax-2 47 8e-05
sp|Q02962|PAX2_HUMAN Paired box protein Pax-2 47 8e-05
sp|Q02548|PAX5_HUMAN Paired box protein Pax-5 (B-cell-speci... 45 2e-04
sp|Q02650|PAX5_MOUSE Paired box protein Pax-5 (B-cell-speci... 45 2e-04
sp|P09083|GSBN_DROME Gooseberry neuro protein (Gooseberry p... 45 2e-04
sp|Q90268|PAX2A_BRARE Paired box protein Pax-2a (Pax[Zf-b])... 45 2e-04
sp|P23760|PAX3_HUMAN Paired box protein Pax-3 (HUP2) 44 5e-04
sp|P24610|PAX3_MOUSE Paired box protein Pax-3 44 5e-04
sp|Q06710|PAX8_HUMAN Paired box protein Pax-8 44 7e-04
sp|P51974|PAX8_RAT Paired box protein Pax-8 44 7e-04
>sp|P32114|PAX2_MOUSE Paired box protein Pax-2
Length = 415
Score = 47.0 bits (110), Expect = 8e-05
Identities = 28/110 (25%), Positives = 55/110 (50%), Gaps = 5/110 (4%)
Frame = +1
Query: 220 ISSIDKVRIVNSYENGEDMNTVARLLNINYGSLKNVLYRFNKNGSISTGKIGGYRKKVLN 399
+ + + RIV G ++R L +++G + +L R+ + GSI G IGG + KV
Sbjct: 32 LPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETGSIKPGVIGGSKPKVAT 91
Query: 400 DEIGDVLLAQIDENPCMTLREMKIFL-----AENSYIASATTISKYLRNR 534
++ D + +NP M E++ L +N + S ++I++ +R +
Sbjct: 92 PKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSVSSINRIIRTK 141
>sp|Q02962|PAX2_HUMAN Paired box protein Pax-2
Length = 416
Score = 47.0 bits (110), Expect = 8e-05
Identities = 28/110 (25%), Positives = 55/110 (50%), Gaps = 5/110 (4%)
Frame = +1
Query: 220 ISSIDKVRIVNSYENGEDMNTVARLLNINYGSLKNVLYRFNKNGSISTGKIGGYRKKVLN 399
+ + + RIV G ++R L +++G + +L R+ + GSI G IGG + KV
Sbjct: 33 LPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETGSIKPGVIGGSKPKVAT 92
Query: 400 DEIGDVLLAQIDENPCMTLREMKIFL-----AENSYIASATTISKYLRNR 534
++ D + +NP M E++ L +N + S ++I++ +R +
Sbjct: 93 PKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSVSSINRIIRTK 142
>sp|Q02548|PAX5_HUMAN Paired box protein Pax-5 (B-cell-specific transcription factor)
(BSAP)
Length = 391
Score = 45.4 bits (106), Expect = 2e-04
Identities = 27/110 (24%), Positives = 55/110 (50%), Gaps = 5/110 (4%)
Frame = +1
Query: 220 ISSIDKVRIVNSYENGEDMNTVARLLNINYGSLKNVLYRFNKNGSISTGKIGGYRKKVLN 399
+ + + RIV G ++R L +++G + +L R+ + GSI G IGG + KV
Sbjct: 33 LPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETGSIKPGVIGGSKPKVAT 92
Query: 400 DEIGDVLLAQIDENPCMTLREMKIFL-----AENSYIASATTISKYLRNR 534
++ + + +NP M E++ L +N + S ++I++ +R +
Sbjct: 93 PKVVEKIAEYKRQNPTMFAWEIRDRLLAERVCDNDTVPSVSSINRIIRTK 142
>sp|Q02650|PAX5_MOUSE Paired box protein Pax-5 (B-cell-specific transcription factor)
(BSAP)
Length = 391
Score = 45.4 bits (106), Expect = 2e-04
Identities = 27/110 (24%), Positives = 55/110 (50%), Gaps = 5/110 (4%)
Frame = +1
Query: 220 ISSIDKVRIVNSYENGEDMNTVARLLNINYGSLKNVLYRFNKNGSISTGKIGGYRKKVLN 399
+ + + RIV G ++R L +++G + +L R+ + GSI G IGG + KV
Sbjct: 33 LPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETGSIKPGVIGGSKPKVAT 92
Query: 400 DEIGDVLLAQIDENPCMTLREMKIFL-----AENSYIASATTISKYLRNR 534
++ + + +NP M E++ L +N + S ++I++ +R +
Sbjct: 93 PKVVEKIAEYKRQNPTMFAWEIRDRLLAERVCDNDTVPSVSSINRIIRTK 142
>sp|P09083|GSBN_DROME Gooseberry neuro protein (Gooseberry proximal protein) (BSH4)
Length = 449
Score = 45.4 bits (106), Expect = 2e-04
Identities = 29/100 (29%), Positives = 53/100 (53%), Gaps = 2/100 (2%)
Frame = +1
Query: 235 KVRIVNSYENGEDMNTVARLLNINYGSLKNVLYRFNKNGSISTGKIGGYRKKVLNDEIGD 414
+++IV +G ++R L +++G + +L R+ + GSI G IGG + KV + EI
Sbjct: 42 RLKIVEMAASGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPKVTSPEIET 101
Query: 415 VLLAQIDENPCMTLREMKIFLAENSYI--ASATTISKYLR 528
+ ENP + E++ L + + S ++IS+ LR
Sbjct: 102 RIDELRKENPSIFSWEIREKLIKEGFADPPSTSSISRLLR 141
>sp|Q90268|PAX2A_BRARE Paired box protein Pax-2a (Pax[Zf-b]) (No isthmus protein)
Length = 410
Score = 45.4 bits (106), Expect = 2e-04
Identities = 27/110 (24%), Positives = 55/110 (50%), Gaps = 5/110 (4%)
Frame = +1
Query: 220 ISSIDKVRIVNSYENGEDMNTVARLLNINYGSLKNVLYRFNKNGSISTGKIGGYRKKVLN 399
+ + + RIV G ++R L +++G + +L R+ + GSI G IGG + KV
Sbjct: 36 LPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETGSIKPGVIGGSKPKVAT 95
Query: 400 DEIGDVLLAQIDENPCMTLREMKIFL-----AENSYIASATTISKYLRNR 534
++ + + +NP M E++ L +N + S ++I++ +R +
Sbjct: 96 PKVVEKIAEYKRQNPTMFAWEIRDRLLAEGVCDNDTVPSVSSINRIIRTK 145
>sp|P23760|PAX3_HUMAN Paired box protein Pax-3 (HUP2)
Length = 479
Score = 44.3 bits (103), Expect = 5e-04
Identities = 29/105 (27%), Positives = 55/105 (52%), Gaps = 6/105 (5%)
Frame = +1
Query: 241 RIVNSYENGEDMNTVARLLNINYGSLKNVLYRFNKNGSISTGKIGGYR-KKVLNDEIGDV 417
+IV +G ++R L +++G + +L R+ + GSI G IGG + K+V ++
Sbjct: 58 KIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIRPGAIGGSKPKQVTTPDVEKK 117
Query: 418 LLAQIDENPCMTLRE-----MKIFLAENSYIASATTISKYLRNRF 537
+ ENP M E +K + + + + S ++IS+ LR++F
Sbjct: 118 IEEYKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSISRILRSKF 162
>sp|P24610|PAX3_MOUSE Paired box protein Pax-3
Length = 479
Score = 44.3 bits (103), Expect = 5e-04
Identities = 29/105 (27%), Positives = 55/105 (52%), Gaps = 6/105 (5%)
Frame = +1
Query: 241 RIVNSYENGEDMNTVARLLNINYGSLKNVLYRFNKNGSISTGKIGGYR-KKVLNDEIGDV 417
+IV +G ++R L +++G + +L R+ + GSI G IGG + K+V ++
Sbjct: 58 KIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIRPGAIGGSKPKQVTTPDVEKK 117
Query: 418 LLAQIDENPCMTLRE-----MKIFLAENSYIASATTISKYLRNRF 537
+ ENP M E +K + + + + S ++IS+ LR++F
Sbjct: 118 IEEYKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSISRILRSKF 162
>sp|Q06710|PAX8_HUMAN Paired box protein Pax-8
Length = 450
Score = 43.9 bits (102), Expect = 7e-04
Identities = 27/110 (24%), Positives = 56/110 (50%), Gaps = 5/110 (4%)
Frame = +1
Query: 220 ISSIDKVRIVNSYENGEDMNTVARLLNINYGSLKNVLYRFNKNGSISTGKIGGYRKKVLN 399
+ + + RIV+ G ++R L +++G + +L R+ + GSI G IGG + KV
Sbjct: 26 LPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSKILGRYYETGSIRPGVIGGSKPKVAT 85
Query: 400 DEIGDVLLAQIDENPCMTLREMKIFL-----AENSYIASATTISKYLRNR 534
++ + + +NP M E++ L +N + S ++I++ +R +
Sbjct: 86 PKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDTVPSVSSINRIIRTK 135
>sp|P51974|PAX8_RAT Paired box protein Pax-8
Length = 458
Score = 43.9 bits (102), Expect = 7e-04
Identities = 27/110 (24%), Positives = 56/110 (50%), Gaps = 5/110 (4%)
Frame = +1
Query: 220 ISSIDKVRIVNSYENGEDMNTVARLLNINYGSLKNVLYRFNKNGSISTGKIGGYRKKVLN 399
+ + + RIV+ G ++R L +++G + +L R+ + GSI G IGG + KV
Sbjct: 26 LPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSKILGRYYETGSIRPGVIGGSKPKVAT 85
Query: 400 DEIGDVLLAQIDENPCMTLREMKIFL-----AENSYIASATTISKYLRNR 534
++ + + +NP M E++ L +N + S ++I++ +R +
Sbjct: 86 PKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDTVPSVSSINRIIRTK 135
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 98,608,447
Number of Sequences: 369166
Number of extensions: 1955955
Number of successful extensions: 5600
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5387
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5592
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9606826000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)