DrC_00792
- Cluster detail
- GO Category : Not Available
- Consensus Sequence :
BLASTX 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= DrC_00792 (987 letters) Database: Non-redundant SwissProt sequences 184,735 sequences; 68,354,980 total letters Score E Sequences producing significant alignments: (bits) Value sp|Q566L7|FA61B_XENTR Protein FAM61B homolog 60 7e-09 sp|Q8CGC4|FA61B_MOUSE Protein FAM61B 55 2e-07 sp|Q9BX40|FA61B_HUMAN Protein FAM61B 54 5e-07 sp|Q8K2F8|FA61A_MOUSE Protein FAM61A 46 2e-04 sp|Q8ND56|FA61A_HUMAN Protein FAM61A (Possible alpha synucl... 46 2e-04 sp|Q5R4R4|FA61A_PONPY Protein FAM61A 46 2e-04 sp|Q9HGL3|SUM2_SCHPO Protein sum2 45 3e-04 sp|P45978|SCD6_YEAST Protein SCD6 44 5e-04 sp|Q92804|RBP56_HUMAN TATA-binding protein associated facto... 34 0.56 sp|P25870|CLH_DICDI Clathrin heavy chain 31 4.7
>sp|Q566L7|FA61B_XENTR Protein FAM61B homolog Length = 382 Score = 60.5 bits (145), Expect = 7e-09 Identities = 52/173 (30%), Positives = 71/173 (41%), Gaps = 15/173 (8%) Frame = +3 Query: 366 NNPKMKKKPTRENDASKKDETFKEDYDFETANAIIAKELAALNIS-----QXXXXXXXXX 530 N + + +PT + + K F+ D+DFETANA +E + Sbjct: 228 NRSRGQNRPTTVKENAIK---FEGDFDFETANAQFNREELDKEFKDKLNFKDEKPEKEGE 284 Query: 531 XXXXXGQLSENSDAG----------YYDKTKSFFDNISSEMLDRANGKSVRPMNRKEERK 680 G ++NSD YYD++KSFFDNISSEM R EERK Sbjct: 285 EKTDSGVETQNSDGNPEEDPLGPNIYYDRSKSFFDNISSEMKSRRT-------TWAEERK 337 Query: 681 INVETFGVAEAXXXXXXXXXXXXXXXXHYSKSIRGSNFGGTYRGNSNEMTFRR 839 +N ETFGV+ + +RG +F G +RG T RR Sbjct: 338 LNTETFGVS--------------------GRFLRGRSFRGGFRGGRGSATPRR 370
>sp|Q8CGC4|FA61B_MOUSE Protein FAM61B Length = 385 Score = 55.5 bits (132), Expect = 2e-07 Identities = 51/171 (29%), Positives = 69/171 (40%), Gaps = 13/171 (7%) Frame = +3 Query: 366 NNPKMKKKPTRENDASKKDETFKEDYDFETANAIIAKE------LAALNISQXXXXXXXX 527 N + + +PT + + K F+ D+DFE+ANA +E LN Sbjct: 231 NRSRGQNRPTNVKENTIK---FEGDFDFESANAQFNREELDKEFKKKLNFKDDKADKGEE 287 Query: 528 XXXXXXGQLSENSDAG-------YYDKTKSFFDNISSEMLDRANGKSVRPMNRKEERKIN 686 Q E + YYDK+KSFFDNISSE+ S R EERK+N Sbjct: 288 KDPAVMTQSEETAAEEDLLGPNCYYDKSKSFFDNISSEL-----KTSSRRTTWAEERKLN 342 Query: 687 VETFGVAEAXXXXXXXXXXXXXXXXHYSKSIRGSNFGGTYRGNSNEMTFRR 839 ETFGV+ + +RG + G +RG T RR Sbjct: 343 TETFGVS--------------------GRFLRGRSSRGGFRGGRGNGTTRR 373
>sp|Q9BX40|FA61B_HUMAN Protein FAM61B Length = 385 Score = 54.3 bits (129), Expect = 5e-07 Identities = 51/171 (29%), Positives = 69/171 (40%), Gaps = 13/171 (7%) Frame = +3 Query: 366 NNPKMKKKPTRENDASKKDETFKEDYDFETANAIIAKE------LAALNISQXXXXXXXX 527 N + + +PT + + K F+ D+DFE+ANA +E LN Sbjct: 231 NRSRGQNRPTNVKENTIK---FEGDFDFESANAQFNREELDKEFKKKLNFKDDKAEKGEE 287 Query: 528 XXXXXXGQLSENSDAG-------YYDKTKSFFDNISSEMLDRANGKSVRPMNRKEERKIN 686 Q +E YYDK+KSFFDNISSE+ S R EERK+N Sbjct: 288 KDLAVVTQSAEAPAEEDLLGPNCYYDKSKSFFDNISSEL-----KTSSRRTTWAEERKLN 342 Query: 687 VETFGVAEAXXXXXXXXXXXXXXXXHYSKSIRGSNFGGTYRGNSNEMTFRR 839 ETFGV+ + +RG + G +RG T RR Sbjct: 343 TETFGVS--------------------GRFLRGRSSRGGFRGGRGNGTTRR 373
>sp|Q8K2F8|FA61A_MOUSE Protein FAM61A Length = 462 Score = 45.8 bits (107), Expect = 2e-04 Identities = 36/113 (31%), Positives = 50/113 (44%), Gaps = 21/113 (18%) Frame = +3 Query: 429 FKEDYDFETANAIIAKELAALNIS----------QXXXXXXXXXXXXXXGQLSENSDAG- 575 F++D+DFE+ANA KE + G ++NS+ Sbjct: 291 FEKDFDFESANAQFNKEEIDREFHNKLKLKEDKLEKQEKPVNGEDKGDSGVDTQNSEGNA 350 Query: 576 ----------YYDKTKSFFDNISSEMLDRANGKSVRPMNRKEERKINVETFGV 704 YYDKTKSFFDNIS + + + RP EER++N ETFG+ Sbjct: 351 DEEDPLGPNCYYDKTKSFFDNISCD-----DNRERRP-TWAEERRLNAETFGI 397
>sp|Q8ND56|FA61A_HUMAN Protein FAM61A (Possible alpha synuclein-binding protein) (AlphaSNBP) Length = 463 Score = 45.8 bits (107), Expect = 2e-04 Identities = 36/113 (31%), Positives = 50/113 (44%), Gaps = 21/113 (18%) Frame = +3 Query: 429 FKEDYDFETANAIIAKELAALNIS----------QXXXXXXXXXXXXXXGQLSENSDAG- 575 F++D+DFE+ANA KE + G ++NS+ Sbjct: 292 FEKDFDFESANAQFNKEEIDREFHNKLKLKEDKLEKQEKPVNGEDKGDSGVDTQNSEGNA 351 Query: 576 ----------YYDKTKSFFDNISSEMLDRANGKSVRPMNRKEERKINVETFGV 704 YYDKTKSFFDNIS + + + RP EER++N ETFG+ Sbjct: 352 DEEDPLGPNCYYDKTKSFFDNISCD-----DNRERRP-TWAEERRLNAETFGI 398
>sp|Q5R4R4|FA61A_PONPY Protein FAM61A Length = 463 Score = 45.8 bits (107), Expect = 2e-04 Identities = 36/113 (31%), Positives = 50/113 (44%), Gaps = 21/113 (18%) Frame = +3 Query: 429 FKEDYDFETANAIIAKELAALNIS----------QXXXXXXXXXXXXXXGQLSENSDAG- 575 F++D+DFE+ANA KE + G ++NS+ Sbjct: 292 FEKDFDFESANAQFNKEEIDREFHNKLKLKEDKLEKQEKPVNGEDKGDSGVDTQNSEGNA 351 Query: 576 ----------YYDKTKSFFDNISSEMLDRANGKSVRPMNRKEERKINVETFGV 704 YYDKTKSFFDNIS + + + RP EER++N ETFG+ Sbjct: 352 DEEDPLGPNCYYDKTKSFFDNISCD-----DNRERRP-TWAEERRLNAETFGI 398
>sp|Q9HGL3|SUM2_SCHPO Protein sum2 Length = 426 Score = 45.1 bits (105), Expect = 3e-04 Identities = 35/119 (29%), Positives = 54/119 (45%) Frame = +3 Query: 351 SNSYDNNPKMKKKPTRENDASKKDETFKEDYDFETANAIIAKELAALNISQXXXXXXXXX 530 S + + + K+ PT + DAS + ++DF+TAN L Sbjct: 280 SQTVETSGPSKEVPTTQPDASAAKP--RTEFDFQTANQKFQSMKDDL------------- 324 Query: 531 XXXXXGQLSENSDAGYYDKTKSFFDNISSEMLDRANGKSVRPMNRKEERKINVETFGVA 707 G+ E ++ +Y +SFFDNIS E ++ + R R ER +N+ETFGVA Sbjct: 325 ---LKGKNDEEAEE-FYKPKQSFFDNISCESKEKGMEAADRRALRDRERSLNMETFGVA 379
>sp|P45978|SCD6_YEAST Protein SCD6 Length = 349 Score = 44.3 bits (103), Expect = 5e-04 Identities = 35/123 (28%), Positives = 55/123 (44%), Gaps = 6/123 (4%) Frame = +3 Query: 363 DNNPKMKKKPTRE-NDASKKDETFK-----EDYDFETANAIIAKELAALNISQXXXXXXX 524 +N PK ++ R N + + FK ED+DF++ NA K + ++ + Sbjct: 173 ENEPKYQRNKNRSSNRPPQSNRNFKVDIPNEDFDFQSNNAKFTKG-DSTDVEKEKELESA 231 Query: 525 XXXXXXXGQLSENSDAGYYDKTKSFFDNISSEMLDRANGKSVRPMNRKEERKINVETFGV 704 + SD +Y+K SFFD IS+ N M +EE+ +NV+TFG Sbjct: 232 VHK-------QDESDEQFYNKKSSFFDTISTSTETNTN------MRWQEEKMLNVDTFGQ 278 Query: 705 AEA 713 A A Sbjct: 279 ASA 281
>sp|Q92804|RBP56_HUMAN TATA-binding protein associated factor 2N (RNA-binding protein 56) (TAFII68) (TAF(II)68) Length = 592 Score = 34.3 bits (77), Expect = 0.56 Identities = 26/114 (22%), Positives = 42/114 (36%), Gaps = 7/114 (6%) Frame = +3 Query: 135 GNNYRASCDYGQSRDYYHMKQTGXXXXXXXXXXXXXXXXVNKLRGFESS--ETGRDYSYS 308 G NY YGQS+ Y G + + ESS + GR SY Sbjct: 47 GQNYSGYSSYGQSQSGYSQSYGGYENQKQSSYSQQPYNNQGQQQNMESSGSQGGRAPSYD 106 Query: 309 Q-----YYDYKPRNGYEKYSNSYDNNPKMKKKPTRENDASKKDETFKEDYDFET 455 Q Y ++GY+++ SYD ++ + + + +E+Y T Sbjct: 107 QPDYGQQDSYDQQSGYDQHQGSYDEQSNYDQQHDSYSQNQQSYHSQRENYSHHT 160
>sp|P25870|CLH_DICDI Clathrin heavy chain Length = 1694 Score = 31.2 bits (69), Expect = 4.7 Identities = 19/61 (31%), Positives = 30/61 (49%) Frame = -1 Query: 357 N*NTFHIHYEVYNHNIGSKNNHGQFLKIRSPVIYLHPYYCNTDLDGNHCDIYLFVSCDNN 178 N N F +E + I + N GQ L + + PY CNT N+ ++ + ++C NN Sbjct: 299 NENIFVTAFEESTNGIIAVNRKGQVLSVSIDDKNIIPYICNT---LNNLELAISMACKNN 355 Query: 177 L 175 L Sbjct: 356 L 356
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,682,913
Number of Sequences: 369166
Number of extensions: 1724626
Number of successful extensions: 5198
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4945
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5174
length of database: 68,354,980
effective HSP length: 111
effective length of database: 47,849,395
effective search space used: 10383318715
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Cluster detail
