Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_016_D15
(642 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q566L7|FA61B_XENTR Protein FAM61B homolog 55 1e-07
sp|Q8CGC4|FA61B_MOUSE Protein FAM61B 54 4e-07
sp|Q9BX40|FA61B_HUMAN Protein FAM61B 52 1e-06
sp|Q8K2F8|FA61A_MOUSE Protein FAM61A 46 9e-05
sp|Q8ND56|FA61A_HUMAN Protein FAM61A (Possible alpha synucl... 46 9e-05
sp|Q5R4R4|FA61A_PONPY Protein FAM61A 46 9e-05
sp|Q9HGL3|SUM2_SCHPO Protein sum2 45 2e-04
sp|P45978|SCD6_YEAST Protein SCD6 44 3e-04
sp|P39448|TRKA_VIBAL Trk system potassium uptake protein tr... 29 9.0
>sp|Q566L7|FA61B_XENTR Protein FAM61B homolog
Length = 382
Score = 55.5 bits (132), Expect = 1e-07
Identities = 43/129 (33%), Positives = 58/129 (44%), Gaps = 15/129 (11%)
Frame = +3
Query: 24 NNPKMKKKPTRENDASKKDETFKEDYDFETANAIIAKELAALNIS-----QXXXXXXXXX 188
N + + +PT + + K F+ D+DFETANA +E +
Sbjct: 228 NRSRGQNRPTTVKENAIK---FEGDFDFETANAQFNREELDKEFKDKLNFKDEKPEKEGE 284
Query: 189 XXXXXGQLSENSDAG----------YYDKTKSFFDNISSEMLDRANGKSVRPMNRKEERK 338
G ++NSD YYD++KSFFDNISSEM R EERK
Sbjct: 285 EKTDSGVETQNSDGNPEEDPLGPNIYYDRSKSFFDNISSEMKSRRT-------TWAEERK 337
Query: 339 INVETFGVA 365
+N ETFGV+
Sbjct: 338 LNTETFGVS 346
>sp|Q8CGC4|FA61B_MOUSE Protein FAM61B
Length = 385
Score = 53.5 bits (127), Expect = 4e-07
Identities = 43/127 (33%), Positives = 57/127 (44%), Gaps = 13/127 (10%)
Frame = +3
Query: 24 NNPKMKKKPTRENDASKKDETFKEDYDFETANAIIAKE------LAALNISQXXXXXXXX 185
N + + +PT + + K F+ D+DFE+ANA +E LN
Sbjct: 231 NRSRGQNRPTNVKENTIK---FEGDFDFESANAQFNREELDKEFKKKLNFKDDKADKGEE 287
Query: 186 XXXXXXGQLSENSDAG-------YYDKTKSFFDNISSEMLDRANGKSVRPMNRKEERKIN 344
Q E + YYDK+KSFFDNISSE+ S R EERK+N
Sbjct: 288 KDPAVMTQSEETAAEEDLLGPNCYYDKSKSFFDNISSEL-----KTSSRRTTWAEERKLN 342
Query: 345 VETFGVA 365
ETFGV+
Sbjct: 343 TETFGVS 349
>sp|Q9BX40|FA61B_HUMAN Protein FAM61B
Length = 385
Score = 52.4 bits (124), Expect = 1e-06
Identities = 43/127 (33%), Positives = 57/127 (44%), Gaps = 13/127 (10%)
Frame = +3
Query: 24 NNPKMKKKPTRENDASKKDETFKEDYDFETANAIIAKE------LAALNISQXXXXXXXX 185
N + + +PT + + K F+ D+DFE+ANA +E LN
Sbjct: 231 NRSRGQNRPTNVKENTIK---FEGDFDFESANAQFNREELDKEFKKKLNFKDDKAEKGEE 287
Query: 186 XXXXXXGQLSENSDAG-------YYDKTKSFFDNISSEMLDRANGKSVRPMNRKEERKIN 344
Q +E YYDK+KSFFDNISSE+ S R EERK+N
Sbjct: 288 KDLAVVTQSAEAPAEEDLLGPNCYYDKSKSFFDNISSEL-----KTSSRRTTWAEERKLN 342
Query: 345 VETFGVA 365
ETFGV+
Sbjct: 343 TETFGVS 349
>sp|Q8K2F8|FA61A_MOUSE Protein FAM61A
Length = 462
Score = 45.8 bits (107), Expect = 9e-05
Identities = 36/113 (31%), Positives = 50/113 (44%), Gaps = 21/113 (18%)
Frame = +3
Query: 87 FKEDYDFETANAIIAKELAALNIS----------QXXXXXXXXXXXXXXGQLSENSDAG- 233
F++D+DFE+ANA KE + G ++NS+
Sbjct: 291 FEKDFDFESANAQFNKEEIDREFHNKLKLKEDKLEKQEKPVNGEDKGDSGVDTQNSEGNA 350
Query: 234 ----------YYDKTKSFFDNISSEMLDRANGKSVRPMNRKEERKINVETFGV 362
YYDKTKSFFDNIS + + + RP EER++N ETFG+
Sbjct: 351 DEEDPLGPNCYYDKTKSFFDNISCD-----DNRERRP-TWAEERRLNAETFGI 397
>sp|Q8ND56|FA61A_HUMAN Protein FAM61A (Possible alpha synuclein-binding protein)
(AlphaSNBP)
Length = 463
Score = 45.8 bits (107), Expect = 9e-05
Identities = 36/113 (31%), Positives = 50/113 (44%), Gaps = 21/113 (18%)
Frame = +3
Query: 87 FKEDYDFETANAIIAKELAALNIS----------QXXXXXXXXXXXXXXGQLSENSDAG- 233
F++D+DFE+ANA KE + G ++NS+
Sbjct: 292 FEKDFDFESANAQFNKEEIDREFHNKLKLKEDKLEKQEKPVNGEDKGDSGVDTQNSEGNA 351
Query: 234 ----------YYDKTKSFFDNISSEMLDRANGKSVRPMNRKEERKINVETFGV 362
YYDKTKSFFDNIS + + + RP EER++N ETFG+
Sbjct: 352 DEEDPLGPNCYYDKTKSFFDNISCD-----DNRERRP-TWAEERRLNAETFGI 398
>sp|Q5R4R4|FA61A_PONPY Protein FAM61A
Length = 463
Score = 45.8 bits (107), Expect = 9e-05
Identities = 36/113 (31%), Positives = 50/113 (44%), Gaps = 21/113 (18%)
Frame = +3
Query: 87 FKEDYDFETANAIIAKELAALNIS----------QXXXXXXXXXXXXXXGQLSENSDAG- 233
F++D+DFE+ANA KE + G ++NS+
Sbjct: 292 FEKDFDFESANAQFNKEEIDREFHNKLKLKEDKLEKQEKPVNGEDKGDSGVDTQNSEGNA 351
Query: 234 ----------YYDKTKSFFDNISSEMLDRANGKSVRPMNRKEERKINVETFGV 362
YYDKTKSFFDNIS + + + RP EER++N ETFG+
Sbjct: 352 DEEDPLGPNCYYDKTKSFFDNISCD-----DNRERRP-TWAEERRLNAETFGI 398
>sp|Q9HGL3|SUM2_SCHPO Protein sum2
Length = 426
Score = 45.1 bits (105), Expect = 2e-04
Identities = 35/119 (29%), Positives = 54/119 (45%)
Frame = +3
Query: 9 SNSYDNNPKMKKKPTRENDASKKDETFKEDYDFETANAIIAKELAALNISQXXXXXXXXX 188
S + + + K+ PT + DAS + ++DF+TAN L
Sbjct: 280 SQTVETSGPSKEVPTTQPDASAAKP--RTEFDFQTANQKFQSMKDDL------------- 324
Query: 189 XXXXXGQLSENSDAGYYDKTKSFFDNISSEMLDRANGKSVRPMNRKEERKINVETFGVA 365
G+ E ++ +Y +SFFDNIS E ++ + R R ER +N+ETFGVA
Sbjct: 325 ---LKGKNDEEAEE-FYKPKQSFFDNISCESKEKGMEAADRRALRDRERSLNMETFGVA 379
>sp|P45978|SCD6_YEAST Protein SCD6
Length = 349
Score = 44.3 bits (103), Expect = 3e-04
Identities = 35/123 (28%), Positives = 55/123 (44%), Gaps = 6/123 (4%)
Frame = +3
Query: 21 DNNPKMKKKPTRE-NDASKKDETFK-----EDYDFETANAIIAKELAALNISQXXXXXXX 182
+N PK ++ R N + + FK ED+DF++ NA K + ++ +
Sbjct: 173 ENEPKYQRNKNRSSNRPPQSNRNFKVDIPNEDFDFQSNNAKFTKG-DSTDVEKEKELESA 231
Query: 183 XXXXXXXGQLSENSDAGYYDKTKSFFDNISSEMLDRANGKSVRPMNRKEERKINVETFGV 362
+ SD +Y+K SFFD IS+ N M +EE+ +NV+TFG
Sbjct: 232 VHK-------QDESDEQFYNKKSSFFDTISTSTETNTN------MRWQEEKMLNVDTFGQ 278
Query: 363 AEA 371
A A
Sbjct: 279 ASA 281
>sp|P39448|TRKA_VIBAL Trk system potassium uptake protein trkA (K(+)-uptake protein trkA)
Length = 458
Score = 29.3 bits (64), Expect = 9.0
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = +1
Query: 331 SERSTLKHLVLLKQTEILVEILQGGIVTVAIIPNQ 435
++R K +++L Q V+++QGG++ VAI P Q
Sbjct: 318 AKRMGAKKVMVLIQRGAYVDLVQGGVIDVAISPQQ 352
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,714,637
Number of Sequences: 369166
Number of extensions: 1080948
Number of successful extensions: 2963
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2895
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2955
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5218718490
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)