Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_020_G17
(854 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q566L7|FA61B_XENTR Protein FAM61B homolog 57 5e-08
sp|Q8CGC4|FA61B_MOUSE Protein FAM61B 52 2e-06
sp|Q9BX40|FA61B_HUMAN Protein FAM61B 51 4e-06
sp|Q8K2F8|FA61A_MOUSE Protein FAM61A 46 2e-04
sp|Q8ND56|FA61A_HUMAN Protein FAM61A (Possible alpha synucl... 46 2e-04
sp|Q5R4R4|FA61A_PONPY Protein FAM61A 46 2e-04
sp|P45978|SCD6_YEAST Protein SCD6 44 7e-04
sp|Q9HGL3|SUM2_SCHPO Protein sum2 43 0.001
sp|Q92804|RBP56_HUMAN TATA-binding protein associated facto... 34 0.59
sp|P25870|CLH_DICDI Clathrin heavy chain 31 3.8
>sp|Q566L7|FA61B_XENTR Protein FAM61B homolog
Length = 382
Score = 57.4 bits (137), Expect = 5e-08
Identities = 47/152 (30%), Positives = 62/152 (40%), Gaps = 15/152 (9%)
Frame = +3
Query: 429 FKEDYDFETANAIIAKELAALNIS-----QXXXXXXXXXXXXXXGQLSENSDAG------ 575
F+ D+DFETANA +E + G ++NSD
Sbjct: 246 FEGDFDFETANAQFNREELDKEFKDKLNFKDEKPEKEGEEKTDSGVETQNSDGNPEEDPL 305
Query: 576 ----YYDKTKSFFDNISSEMLDRANGKSVRPMNRKEERKINVETFGVAEAXXXXXXXXXX 743
YYD++KSFFDNISSEM R EERK+N ETFGV+
Sbjct: 306 GPNIYYDRSKSFFDNISSEMKSRRT-------TWAEERKLNTETFGVS------------ 346
Query: 744 XXXXXXHYSKSIRGSNFGGTYRGNSNEMTFRK 839
+ +RG +F G +RG T R+
Sbjct: 347 --------GRFLRGRSFRGGFRGGRGSATPRR 370
>sp|Q8CGC4|FA61B_MOUSE Protein FAM61B
Length = 385
Score = 52.4 bits (124), Expect = 2e-06
Identities = 47/161 (29%), Positives = 63/161 (39%), Gaps = 13/161 (8%)
Frame = +3
Query: 396 RENDASKKDETFKEDYDFETANAIIAKE------LAALNISQXXXXXXXXXXXXXXGQLS 557
R + + F+ D+DFE+ANA +E LN Q
Sbjct: 238 RPTNVKENTIKFEGDFDFESANAQFNREELDKEFKKKLNFKDDKADKGEEKDPAVMTQSE 297
Query: 558 ENSDAG-------YYDKTKSFFDNISSEMLDRANGKSVRPMNRKEERKINVETFGVAEAX 716
E + YYDK+KSFFDNISSE+ S R EERK+N ETFGV+
Sbjct: 298 ETAAEEDLLGPNCYYDKSKSFFDNISSEL-----KTSSRRTTWAEERKLNTETFGVS--- 349
Query: 717 XXXXXXXXXXXXXXXHYSKSIRGSNFGGTYRGNSNEMTFRK 839
+ +RG + G +RG T R+
Sbjct: 350 -----------------GRFLRGRSSRGGFRGGRGNGTTRR 373
>sp|Q9BX40|FA61B_HUMAN Protein FAM61B
Length = 385
Score = 51.2 bits (121), Expect = 4e-06
Identities = 47/161 (29%), Positives = 63/161 (39%), Gaps = 13/161 (8%)
Frame = +3
Query: 396 RENDASKKDETFKEDYDFETANAIIAKE------LAALNISQXXXXXXXXXXXXXXGQLS 557
R + + F+ D+DFE+ANA +E LN Q +
Sbjct: 238 RPTNVKENTIKFEGDFDFESANAQFNREELDKEFKKKLNFKDDKAEKGEEKDLAVVTQSA 297
Query: 558 ENSDAG-------YYDKTKSFFDNISSEMLDRANGKSVRPMNRKEERKINVETFGVAEAX 716
E YYDK+KSFFDNISSE+ S R EERK+N ETFGV+
Sbjct: 298 EAPAEEDLLGPNCYYDKSKSFFDNISSEL-----KTSSRRTTWAEERKLNTETFGVS--- 349
Query: 717 XXXXXXXXXXXXXXXHYSKSIRGSNFGGTYRGNSNEMTFRK 839
+ +RG + G +RG T R+
Sbjct: 350 -----------------GRFLRGRSSRGGFRGGRGNGTTRR 373
>sp|Q8K2F8|FA61A_MOUSE Protein FAM61A
Length = 462
Score = 45.8 bits (107), Expect = 2e-04
Identities = 36/113 (31%), Positives = 50/113 (44%), Gaps = 21/113 (18%)
Frame = +3
Query: 429 FKEDYDFETANAIIAKELAALNIS----------QXXXXXXXXXXXXXXGQLSENSDAG- 575
F++D+DFE+ANA KE + G ++NS+
Sbjct: 291 FEKDFDFESANAQFNKEEIDREFHNKLKLKEDKLEKQEKPVNGEDKGDSGVDTQNSEGNA 350
Query: 576 ----------YYDKTKSFFDNISSEMLDRANGKSVRPMNRKEERKINVETFGV 704
YYDKTKSFFDNIS + + + RP EER++N ETFG+
Sbjct: 351 DEEDPLGPNCYYDKTKSFFDNISCD-----DNRERRP-TWAEERRLNAETFGI 397
>sp|Q8ND56|FA61A_HUMAN Protein FAM61A (Possible alpha synuclein-binding protein)
(AlphaSNBP)
Length = 463
Score = 45.8 bits (107), Expect = 2e-04
Identities = 36/113 (31%), Positives = 50/113 (44%), Gaps = 21/113 (18%)
Frame = +3
Query: 429 FKEDYDFETANAIIAKELAALNIS----------QXXXXXXXXXXXXXXGQLSENSDAG- 575
F++D+DFE+ANA KE + G ++NS+
Sbjct: 292 FEKDFDFESANAQFNKEEIDREFHNKLKLKEDKLEKQEKPVNGEDKGDSGVDTQNSEGNA 351
Query: 576 ----------YYDKTKSFFDNISSEMLDRANGKSVRPMNRKEERKINVETFGV 704
YYDKTKSFFDNIS + + + RP EER++N ETFG+
Sbjct: 352 DEEDPLGPNCYYDKTKSFFDNISCD-----DNRERRP-TWAEERRLNAETFGI 398
>sp|Q5R4R4|FA61A_PONPY Protein FAM61A
Length = 463
Score = 45.8 bits (107), Expect = 2e-04
Identities = 36/113 (31%), Positives = 50/113 (44%), Gaps = 21/113 (18%)
Frame = +3
Query: 429 FKEDYDFETANAIIAKELAALNIS----------QXXXXXXXXXXXXXXGQLSENSDAG- 575
F++D+DFE+ANA KE + G ++NS+
Sbjct: 292 FEKDFDFESANAQFNKEEIDREFHNKLKLKEDKLEKQEKPVNGEDKGDSGVDTQNSEGNA 351
Query: 576 ----------YYDKTKSFFDNISSEMLDRANGKSVRPMNRKEERKINVETFGV 704
YYDKTKSFFDNIS + + + RP EER++N ETFG+
Sbjct: 352 DEEDPLGPNCYYDKTKSFFDNISCD-----DNRERRP-TWAEERRLNAETFGI 398
>sp|P45978|SCD6_YEAST Protein SCD6
Length = 349
Score = 43.5 bits (101), Expect = 7e-04
Identities = 35/123 (28%), Positives = 55/123 (44%), Gaps = 6/123 (4%)
Frame = +3
Query: 363 DNNPKMKKKPARE-NDASKKDETFK-----EDYDFETANAIIAKELAALNISQXXXXXXX 524
+N PK ++ R N + + FK ED+DF++ NA K + ++ +
Sbjct: 173 ENEPKYQRNKNRSSNRPPQSNRNFKVDIPNEDFDFQSNNAKFTKG-DSTDVEKEKELESA 231
Query: 525 XXXXXXXGQLSENSDAGYYDKTKSFFDNISSEMLDRANGKSVRPMNRKEERKINVETFGV 704
+ SD +Y+K SFFD IS+ N M +EE+ +NV+TFG
Sbjct: 232 VHK-------QDESDEQFYNKKSSFFDTISTSTETNTN------MRWQEEKMLNVDTFGQ 278
Query: 705 AEA 713
A A
Sbjct: 279 ASA 281
>sp|Q9HGL3|SUM2_SCHPO Protein sum2
Length = 426
Score = 43.1 bits (100), Expect = 0.001
Identities = 34/119 (28%), Positives = 53/119 (44%)
Frame = +3
Query: 351 SNSYDNNPKMKKKPARENDASKKDETFKEDYDFETANAIIAKELAALNISQXXXXXXXXX 530
S + + + K+ P + DAS + ++DF+TAN L
Sbjct: 280 SQTVETSGPSKEVPTTQPDASAAKP--RTEFDFQTANQKFQSMKDDL------------- 324
Query: 531 XXXXXGQLSENSDAGYYDKTKSFFDNISSEMLDRANGKSVRPMNRKEERKINVETFGVA 707
G+ E ++ +Y +SFFDNIS E ++ + R R ER +N+ETFGVA
Sbjct: 325 ---LKGKNDEEAEE-FYKPKQSFFDNISCESKEKGMEAADRRALRDRERSLNMETFGVA 379
>sp|Q92804|RBP56_HUMAN TATA-binding protein associated factor 2N (RNA-binding protein 56)
(TAFII68) (TAF(II)68)
Length = 592
Score = 33.9 bits (76), Expect = 0.59
Identities = 26/114 (22%), Positives = 42/114 (36%), Gaps = 7/114 (6%)
Frame = +3
Query: 135 GNNYRASCDYGQSRDYYHMKQTGXXXXXXXXXXXXXXXXVNKLRGFESS--ETGRDYSYS 308
G NY YGQS+ Y G + + ESS + GR SY
Sbjct: 47 GQNYSGYSSYGQSQSGYSQSYGGYENQKQSSYSQQPYNNQGQQQNMESSGSQGGRAPSYD 106
Query: 309 Q-----YYDYKPRNGYEKYSNSYDNNPKMKKKPARENDASKKDETFKEDYDFET 455
Q Y ++GY+++ SYD ++ + + + +E+Y T
Sbjct: 107 QPDYGQQDSYDQQSGYDQHQGSYDEQSNYDQQHDSYSQNQQSYHSQRENYSHHT 160
>sp|P25870|CLH_DICDI Clathrin heavy chain
Length = 1694
Score = 31.2 bits (69), Expect = 3.8
Identities = 19/61 (31%), Positives = 30/61 (49%)
Frame = -3
Query: 357 N*NTFHIHYEVYNHNIGSKNNHGQFLKIRSPVIYLHPYYCNTDLDGNHCDIYLFVSCDNN 178
N N F +E + I + N GQ L + + PY CNT N+ ++ + ++C NN
Sbjct: 299 NENIFVTAFEESTNGIIAVNRKGQVLSVSIDDKNIIPYICNT---LNNLELAISMACKNN 355
Query: 177 L 175
L
Sbjct: 356 L 356
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,203,828
Number of Sequences: 369166
Number of extensions: 1429488
Number of successful extensions: 4605
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4375
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4582
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8438301375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)