Planaria EST Database

DrC_00785

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00785
         (647 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q68FG0|HC127_MOUSE  Hepatocellular carcinoma-associated a...    69   1e-11
sp|Q59268|MGM_EUBBA  2-methyleneglutarate mutase (Alpha-meth...    32   1.1  
sp|Q92833|JARD2_HUMAN  Jumonji protein (Jumonji/ARID domain-...    30   4.1  
sp|P07476|INVO_HUMAN  Involucrin                                   30   5.4  
sp|Q8NVZ9|METK_STAAW  S-adenosylmethionine synthetase (Methi...    30   5.4  
sp|Q6GFR6|METK_STAAR  S-adenosylmethionine synthetase (Methi...    30   5.4  
sp|P66767|METK_STAAN  S-adenosylmethionine synthetase (Methi...    30   5.4  
sp|Q9Y618|NCOR2_HUMAN  Nuclear receptor corepressor 2 (N-CoR...    30   5.4  
sp|P14708|INVO_PONPY  Involucrin                                   30   5.4  
sp|P14591|INVO_PANPA  Involucrin                                   30   5.4  

>sp|Q68FG0|HC127_MOUSE Hepatocellular carcinoma-associated antigen 127 homolog
 sp|Q9NQZ6|HC127_HUMAN Hepatocellular carcinoma-associated antigen 127
          Length = 224

 Score = 68.6 bits (166), Expect = 1e-11
 Identities = 30/39 (76%), Positives = 31/39 (79%)
 Frame = +2

Query: 335 TEGLHQQPPPMKKCQSCQEQIHRNAPICPLCKAKSRSIN 451
           T    QQPPPMK C SC +QIHRNAPICPLCKAKSRS N
Sbjct: 176 TATFRQQPPPMKACLSCHQQIHRNAPICPLCKAKSRSRN 214

>sp|Q59268|MGM_EUBBA 2-methyleneglutarate mutase (Alpha-methyleneglutarate mutase)
          Length = 614

 Score = 32.3 bits (72), Expect = 1.1
 Identities = 15/54 (27%), Positives = 27/54 (50%)
 Frame = +2

Query: 74  YMNPESNVIRPGQVFTRPDITGLGGSMNSFDPTALLNINNPSNDNLGQINASTE 235
           + NP  N++     F+R  +T   G  + + P A  ++  P+ D++GQ    TE
Sbjct: 290 FQNPPGNLVAEAAHFSRMAVTAKLGGADFYRPKAAESVGIPTGDSMGQAIWGTE 343

>sp|Q92833|JARD2_HUMAN Jumonji protein (Jumonji/ARID domain-containing protein 2)
          Length = 1246

 Score = 30.4 bits (67), Expect = 4.1
 Identities = 14/60 (23%), Positives = 25/60 (41%)
 Frame = +2

Query: 224 ASTESHVHKDKPETIKNEQSNFIHKPTMPATLAGVLGTEGLHQQPPPMKKCQSCQEQIHR 403
           A+     H D     + EQ++  H    P+T +   G    H  PP  +  Q  ++Q+ +
Sbjct: 246 ATPAKEKHSDHRADSRREQASANHPAAAPSTGSSAKGLAATHHHPPLHRSAQDLRKQVSK 305

>sp|P07476|INVO_HUMAN Involucrin
          Length = 585

 Score = 30.0 bits (66), Expect = 5.4
 Identities = 16/43 (37%), Positives = 24/43 (55%)
 Frame = +2

Query: 302 TMPATLAGVLGTEGLHQQPPPMKKCQSCQEQIHRNAPICPLCK 430
           T+P TL+  L  E L   PPP+    + QEQ+ +  P+ P C+
Sbjct: 6   TLPVTLSPALSQELLKTVPPPV---NTHQEQMKQPTPLPPPCQ 45

>sp|Q8NVZ9|METK_STAAW S-adenosylmethionine synthetase (Methionine adenosyltransferase)
           (AdoMet synthetase) (MAT)
 sp|Q6G8E3|METK_STAAS S-adenosylmethionine synthetase (Methionine adenosyltransferase)
           (AdoMet synthetase) (MAT)
 sp|Q5HEY9|METK_STAAC S-adenosylmethionine synthetase (Methionine adenosyltransferase)
           (AdoMet synthetase) (MAT)
          Length = 397

 Score = 30.0 bits (66), Expect = 5.4
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = +2

Query: 170 TALLNINNPSNDNLGQINASTESHV-HKDKPETIKNEQSNFIHKPTMPATLAGVLGTEGL 346
           T +++  +  +  L QI    ++HV +   PE + NEQ+ F   PT    + G  G  GL
Sbjct: 196 TIVVSTQHAEDVTLEQIQEDIKAHVIYPTVPENLINEQTKFYINPTGRFVIGGPQGDAGL 255

>sp|Q6GFR6|METK_STAAR S-adenosylmethionine synthetase (Methionine adenosyltransferase)
           (AdoMet synthetase) (MAT)
          Length = 397

 Score = 30.0 bits (66), Expect = 5.4
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = +2

Query: 170 TALLNINNPSNDNLGQINASTESHV-HKDKPETIKNEQSNFIHKPTMPATLAGVLGTEGL 346
           T +++  +  +  L QI    ++HV +   PE + NEQ+ F   PT    + G  G  GL
Sbjct: 196 TIVVSTQHADDVTLEQIQEDIKAHVIYPTVPENLINEQTKFYINPTGRFVIGGPQGDAGL 255

>sp|P66767|METK_STAAN S-adenosylmethionine synthetase (Methionine adenosyltransferase)
           (AdoMet synthetase) (MAT)
 sp|P66766|METK_STAAM S-adenosylmethionine synthetase (Methionine adenosyltransferase)
           (AdoMet synthetase) (MAT)
          Length = 398

 Score = 30.0 bits (66), Expect = 5.4
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = +2

Query: 170 TALLNINNPSNDNLGQINASTESHV-HKDKPETIKNEQSNFIHKPTMPATLAGVLGTEGL 346
           T +++  +  +  L QI    ++HV +   PE + NEQ+ F   PT    + G  G  GL
Sbjct: 196 TIVVSTQHADDVTLEQIQEDIKAHVIYPTVPENLINEQTKFYINPTGRFVIGGPQGDAGL 255

>sp|Q9Y618|NCOR2_HUMAN Nuclear receptor corepressor 2 (N-CoR2) (Silencing mediator of
            retinoic acid and thyroid hormone receptor) (SMRT)
            (SMRTe) (Thyroid-, retinoic-acid-receptor-associated
            corepressor) (T3 receptor-associating factor) (TRAC) (CTG
            repeat protein 26) (SMAP270)
          Length = 2517

 Score = 30.0 bits (66), Expect = 5.4
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +2

Query: 44   DINELYMLHHYMNPESNVIRPG-QVFTRPDITGLG 145
            +IN+    H+   PE N+ +PG ++F  P ITG G
Sbjct: 2289 EINKKLNTHNRNEPEYNISQPGTEIFNMPAITGTG 2323

>sp|P14708|INVO_PONPY Involucrin
          Length = 835

 Score = 30.0 bits (66), Expect = 5.4
 Identities = 16/43 (37%), Positives = 24/43 (55%)
 Frame = +2

Query: 302 TMPATLAGVLGTEGLHQQPPPMKKCQSCQEQIHRNAPICPLCK 430
           T+P TL+  L  E L   PPP+    + QEQ+ +  P+ P C+
Sbjct: 6   TLPVTLSPALSQELLKTVPPPV---NTQQEQMKQPTPLPPPCQ 45

>sp|P14591|INVO_PANPA Involucrin
          Length = 560

 Score = 30.0 bits (66), Expect = 5.4
 Identities = 16/43 (37%), Positives = 24/43 (55%)
 Frame = +2

Query: 302 TMPATLAGVLGTEGLHQQPPPMKKCQSCQEQIHRNAPICPLCK 430
           T+P TL+  L  E L   PPP+    + QEQ+ +  P+ P C+
Sbjct: 6   TLPVTLSPALSQELLKTVPPPV---NTQQEQMKQPTPLPPPCQ 45

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,913,319
Number of Sequences: 369166
Number of extensions: 1164473
Number of successful extensions: 3544
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3455
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3543
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5316264630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00785

  1. Dr_sW_020_E17
  2. Dr_sW_019_K09