Planaria EST Database

DrC_00749

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00749
         (522 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P40629|ZEF2_IRV6  Zinc finger protein                           50   3e-06
sp|Q24307|IAP2_DROME  Apoptosis 2 inhibitor (Inhibitor of ap...    47   2e-05
sp|Q9VUX2|MIB_DROME  Ubiquitin ligase protein mind-bomb (Min...    47   3e-05
sp|Q8WY64|MYLIP_HUMAN  Ubiquitin ligase MYLIP (Myosin regula...    45   8e-05
sp|Q6TEM9|MYLIP_BRARE  Ubiquitin ligase MYLIP (Myosin regula...    45   1e-04
sp|Q13490|BIRC2_HUMAN  Baculoviral IAP repeat-containing pro...    44   2e-04
sp|Q24306|IAP1_DROME  Apoptosis 1 inhibitor (Inhibitor of ap...    44   2e-04
sp|P41436|IAP_GVCP  Apoptosis inhibitor IAP                        44   2e-04
sp|Q13489|BIRC3_HUMAN  Baculoviral IAP repeat-containing pro...    44   2e-04
sp|Q62210|BIRC2_MOUSE  Baculoviral IAP repeat-containing pro...    44   2e-04

>sp|P40629|ZEF2_IRV6 Zinc finger protein
          Length = 145

 Score = 50.1 bits (118), Expect = 3e-06
 Identities = 21/63 (33%), Positives = 36/63 (57%)
 Frame = +3

Query: 258 ELEKYLKILDNLESIIFYRLSEISKKFLNCMVCQSDRVSVLYLPCGHVVLCNKCHLATNE 437
           E EK+ ++ D L ++          K L C++C +++V +L +PCGH+++CN C L  N 
Sbjct: 65  EKEKFNQVEDKLTTL---------SKNLTCIICLTNQVQILTIPCGHLIMCNPCSLNLNN 115

Query: 438 GSC 446
             C
Sbjct: 116 SVC 118

>sp|Q24307|IAP2_DROME Apoptosis 2 inhibitor (Inhibitor of apoptosis 2) (dIAP2) (DIAP)
           (IAP homolog A) (IAP-like protein) (DILP)
          Length = 498

 Score = 47.4 bits (111), Expect = 2e-05
 Identities = 18/44 (40%), Positives = 28/44 (63%)
 Frame = +3

Query: 345 CMVCQSDRVSVLYLPCGHVVLCNKCHLATNEGSCRLCKTQIQEF 476
           C VC  + V V++LPCGH+  CN+C  A +  +C +C+  I+ F
Sbjct: 451 CKVCLDEEVGVVFLPCGHLATCNQC--APSVANCPMCRADIKGF 492

>sp|Q9VUX2|MIB_DROME Ubiquitin ligase protein mind-bomb (Mind bomb homolog) (D-mib)
          Length = 1226

 Score = 47.0 bits (110), Expect = 3e-05
 Identities = 20/48 (41%), Positives = 27/48 (56%)
 Frame = +3

Query: 330  KKFLNCMVCQSDRVSVLYLPCGHVVLCNKCHLATNEGSCRLCKTQIQE 473
            +K   C+VC   R +V + PCGH+V C  C     +  C LC+TQI E
Sbjct: 1012 EKIDECLVCSDRRAAVFFRPCGHMVACEHCSALMKK--CVLCRTQIDE 1057


 Score = 34.7 bits (78), Expect = 0.14
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +3

Query: 345  CMVCQSDRVSVLYLPCGHVVLCNKCHLATNEGSCRLCKTQI 467
            C+VC   +   ++ PCGHV  C  C  A     C +C+  +
Sbjct: 970  CLVCSDAKRDTVFKPCGHVSCCETC--APRVKKCLICRETV 1008

>sp|Q8WY64|MYLIP_HUMAN Ubiquitin ligase MYLIP (Myosin regulatory light chain interacting
           protein) (MIR)
          Length = 445

 Score = 45.4 bits (106), Expect = 8e-05
 Identities = 17/53 (32%), Positives = 30/53 (56%)
 Frame = +3

Query: 330 KKFLNCMVCQSDRVSVLYLPCGHVVLCNKCHLATNEGSCRLCKTQIQEFHTIY 488
           K+ + CMVC  + ++  + PCGH V C  C  A    SC +C+++++    +Y
Sbjct: 382 KEAMLCMVCCEEEINSTFCPCGHTVCCESC--AAQLQSCPVCRSRVEHVQHVY 432

>sp|Q6TEM9|MYLIP_BRARE Ubiquitin ligase MYLIP (Myosin regulatory light chain interacting
           protein) (MIR)
          Length = 472

 Score = 45.1 bits (105), Expect = 1e-04
 Identities = 16/53 (30%), Positives = 30/53 (56%)
 Frame = +3

Query: 330 KKFLNCMVCQSDRVSVLYLPCGHVVLCNKCHLATNEGSCRLCKTQIQEFHTIY 488
           ++ L CM+C  + +   + PCGH+V C  C  A    SC +C+++++    +Y
Sbjct: 379 REALLCMLCCEEEIDAAFCPCGHMVCCQNC--AAQLQSCPVCRSEVEHVQHVY 429

>sp|Q13490|BIRC2_HUMAN Baculoviral IAP repeat-containing protein 2 (Inhibitor of apoptosis
           protein 2) (HIAP2) (HIAP-2) (C-IAP1) (TNFR2-TRAF
           signaling complex protein 2) (IAP homolog B)
          Length = 618

 Score = 44.3 bits (103), Expect = 2e-04
 Identities = 24/78 (30%), Positives = 41/78 (52%)
 Frame = +3

Query: 225 DERLDKISFYEELEKYLKILDNLESIIFYRLSEISKKFLNCMVCQSDRVSVLYLPCGHVV 404
           D  L K  F ++  KY+   D     +  +L  + ++   C VC    VSV+++PCGH+V
Sbjct: 532 DSTLYKNLFVDKNMKYIPTEDVSGLSLEEQLRRLQEE-RTCKVCMDKEVSVVFIPCGHLV 590

Query: 405 LCNKCHLATNEGSCRLCK 458
           +C +C  A +   C +C+
Sbjct: 591 VCQEC--APSLRKCPICR 606

>sp|Q24306|IAP1_DROME Apoptosis 1 inhibitor (Inhibitor of apoptosis 1) (dIAP1) (Thread
           protein)
          Length = 438

 Score = 44.3 bits (103), Expect = 2e-04
 Identities = 18/49 (36%), Positives = 26/49 (53%)
 Frame = +3

Query: 345 CMVCQSDRVSVLYLPCGHVVLCNKCHLATNEGSCRLCKTQIQEFHTIYF 491
           C +C     +  +LPCGHVV C KC  A++   C LC+    +   +YF
Sbjct: 391 CKICYGAEYNTAFLPCGHVVACAKC--ASSVTKCPLCRKPFTDVMRVYF 437

>sp|P41436|IAP_GVCP Apoptosis inhibitor IAP
          Length = 275

 Score = 43.9 bits (102), Expect = 2e-04
 Identities = 17/49 (34%), Positives = 28/49 (57%)
 Frame = +3

Query: 345 CMVCQSDRVSVLYLPCGHVVLCNKCHLATNEGSCRLCKTQIQEFHTIYF 491
           C +C  +   V ++PCGHVV C KC L+ ++  C +C+  +     +YF
Sbjct: 228 CKICYVEECIVCFVPCGHVVACAKCALSVDK--CPMCRKIVTSVLKVYF 274

>sp|Q13489|BIRC3_HUMAN Baculoviral IAP repeat-containing protein 3 (Inhibitor of apoptosis
           protein 1) (HIAP1) (HIAP-1) (C-IAP2) (TNFR2-TRAF
           signaling complex protein 1) (IAP homolog C) (Apoptosis
           inhibitor 2) (API2)
          Length = 604

 Score = 43.9 bits (102), Expect = 2e-04
 Identities = 21/74 (28%), Positives = 41/74 (55%)
 Frame = +3

Query: 249 FYEELEKYLKILDNLESIIFYRLSEISKKFLNCMVCQSDRVSVLYLPCGHVVLCNKCHLA 428
           F ++  KY+   D  +  +  +L  + ++   C VC    VS++++PCGH+V+C  C  A
Sbjct: 526 FVQQDIKYIPTEDVSDLPVEEQLRRLQEE-RTCKVCMDKEVSIVFIPCGHLVVCKDC--A 582

Query: 429 TNEGSCRLCKTQIQ 470
            +   C +C++ I+
Sbjct: 583 PSLRKCPICRSTIK 596

>sp|Q62210|BIRC2_MOUSE Baculoviral IAP repeat-containing protein 2 (Inhibitor of apoptosis
           protein 2) (MIAP2) (MIAP-2)
          Length = 612

 Score = 43.9 bits (102), Expect = 2e-04
 Identities = 24/82 (29%), Positives = 43/82 (52%)
 Frame = +3

Query: 225 DERLDKISFYEELEKYLKILDNLESIIFYRLSEISKKFLNCMVCQSDRVSVLYLPCGHVV 404
           D  L +  F E+  KY+   D     +  +L  + ++   C VC    VS++++PCGH+V
Sbjct: 526 DSTLYENLFVEKNMKYIPTEDVSGLSLEEQLRRLQEE-RTCKVCMDREVSIVFIPCGHLV 584

Query: 405 LCNKCHLATNEGSCRLCKTQIQ 470
           +C +C  A +   C +C+  I+
Sbjct: 585 VCQEC--APSLRKCPICRGTIK 604

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,790,121
Number of Sequences: 369166
Number of extensions: 1098293
Number of successful extensions: 3031
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2943
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3029
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3452909250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00749

  1. Dr_sW_019_H24
  2. Dr_sW_019_M16