Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_019_M16
(217 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P40629|ZEF2_IRV6 Zinc finger protein 49 3e-06
sp|Q24307|IAP2_DROME Apoptosis 2 inhibitor (Inhibitor of ap... 47 1e-05
sp|Q9VUX2|MIB_DROME Ubiquitin ligase protein mind-bomb (Min... 47 1e-05
sp|Q8WY64|MYLIP_HUMAN Ubiquitin ligase MYLIP (Myosin regula... 45 4e-05
sp|Q6TEM9|MYLIP_BRARE Ubiquitin ligase MYLIP (Myosin regula... 45 5e-05
sp|Q24306|IAP1_DROME Apoptosis 1 inhibitor (Inhibitor of ap... 44 9e-05
sp|P41436|IAP_GVCP Apoptosis inhibitor IAP 44 1e-04
sp|Q8BM54|MYLIP_MOUSE Ubiquitin ligase MYLIP (Myosin regula... 44 1e-04
sp|Q13489|BIRC3_HUMAN Baculoviral IAP repeat-containing pro... 44 1e-04
sp|Q90660|BIR_CHICK Inhibitor of apoptosis protein (IAP) (I... 43 2e-04
>sp|P40629|ZEF2_IRV6 Zinc finger protein
Length = 145
Score = 49.3 bits (116), Expect = 3e-06
Identities = 18/46 (39%), Positives = 32/46 (69%)
Frame = +1
Query: 4 NRLSEISKKFLNCMVCQSDRVSVLYLPCGHVVLCNKCHLATNEGSC 141
++L+ +SK L C++C +++V +L +PCGH+++CN C L N C
Sbjct: 74 DKLTTLSKN-LTCIICLTNQVQILTIPCGHLIMCNPCSLNLNNSVC 118
>sp|Q24307|IAP2_DROME Apoptosis 2 inhibitor (Inhibitor of apoptosis 2) (dIAP2) (DIAP)
(IAP homolog A) (IAP-like protein) (DILP)
Length = 498
Score = 47.4 bits (111), Expect = 1e-05
Identities = 18/44 (40%), Positives = 28/44 (63%)
Frame = +1
Query: 40 CMVCQSDRVSVLYLPCGHVVLCNKCHLATNEGSCRLCKTQIQEF 171
C VC + V V++LPCGH+ CN+C A + +C +C+ I+ F
Sbjct: 451 CKVCLDEEVGVVFLPCGHLATCNQC--APSVANCPMCRADIKGF 492
>sp|Q9VUX2|MIB_DROME Ubiquitin ligase protein mind-bomb (Mind bomb homolog) (D-mib)
Length = 1226
Score = 47.0 bits (110), Expect = 1e-05
Identities = 20/48 (41%), Positives = 27/48 (56%)
Frame = +1
Query: 25 KKFLNCMVCQSDRVSVLYLPCGHVVLCNKCHLATNEGSCRLCKTQIQE 168
+K C+VC R +V + PCGH+V C C + C LC+TQI E
Sbjct: 1012 EKIDECLVCSDRRAAVFFRPCGHMVACEHCSALMKK--CVLCRTQIDE 1057
Score = 34.7 bits (78), Expect = 0.070
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +1
Query: 40 CMVCQSDRVSVLYLPCGHVVLCNKCHLATNEGSCRLCKTQI 162
C+VC + ++ PCGHV C C A C +C+ +
Sbjct: 970 CLVCSDAKRDTVFKPCGHVSCCETC--APRVKKCLICRETV 1008
>sp|Q8WY64|MYLIP_HUMAN Ubiquitin ligase MYLIP (Myosin regulatory light chain interacting
protein) (MIR)
Length = 445
Score = 45.4 bits (106), Expect = 4e-05
Identities = 17/53 (32%), Positives = 30/53 (56%)
Frame = +1
Query: 25 KKFLNCMVCQSDRVSVLYLPCGHVVLCNKCHLATNEGSCRLCKTQIQEFHTIY 183
K+ + CMVC + ++ + PCGH V C C A SC +C+++++ +Y
Sbjct: 382 KEAMLCMVCCEEEINSTFCPCGHTVCCESC--AAQLQSCPVCRSRVEHVQHVY 432
>sp|Q6TEM9|MYLIP_BRARE Ubiquitin ligase MYLIP (Myosin regulatory light chain interacting
protein) (MIR)
Length = 472
Score = 45.1 bits (105), Expect = 5e-05
Identities = 16/53 (30%), Positives = 30/53 (56%)
Frame = +1
Query: 25 KKFLNCMVCQSDRVSVLYLPCGHVVLCNKCHLATNEGSCRLCKTQIQEFHTIY 183
++ L CM+C + + + PCGH+V C C A SC +C+++++ +Y
Sbjct: 379 REALLCMLCCEEEIDAAFCPCGHMVCCQNC--AAQLQSCPVCRSEVEHVQHVY 429
>sp|Q24306|IAP1_DROME Apoptosis 1 inhibitor (Inhibitor of apoptosis 1) (dIAP1) (Thread
protein)
Length = 438
Score = 44.3 bits (103), Expect = 9e-05
Identities = 18/49 (36%), Positives = 26/49 (53%)
Frame = +1
Query: 40 CMVCQSDRVSVLYLPCGHVVLCNKCHLATNEGSCRLCKTQIQEFHTIYF 186
C +C + +LPCGHVV C KC A++ C LC+ + +YF
Sbjct: 391 CKICYGAEYNTAFLPCGHVVACAKC--ASSVTKCPLCRKPFTDVMRVYF 437
>sp|P41436|IAP_GVCP Apoptosis inhibitor IAP
Length = 275
Score = 43.9 bits (102), Expect = 1e-04
Identities = 17/49 (34%), Positives = 28/49 (57%)
Frame = +1
Query: 40 CMVCQSDRVSVLYLPCGHVVLCNKCHLATNEGSCRLCKTQIQEFHTIYF 186
C +C + V ++PCGHVV C KC L+ ++ C +C+ + +YF
Sbjct: 228 CKICYVEECIVCFVPCGHVVACAKCALSVDK--CPMCRKIVTSVLKVYF 274
>sp|Q8BM54|MYLIP_MOUSE Ubiquitin ligase MYLIP (Myosin regulatory light chain interacting
protein) (MIR)
Length = 445
Score = 43.9 bits (102), Expect = 1e-04
Identities = 16/53 (30%), Positives = 29/53 (54%)
Frame = +1
Query: 25 KKFLNCMVCQSDRVSVLYLPCGHVVLCNKCHLATNEGSCRLCKTQIQEFHTIY 183
K+ + CM C + ++ + PCGH V C C A SC +C+++++ +Y
Sbjct: 382 KEAMLCMACCEEEINSTFCPCGHTVCCESC--AAQLQSCPVCRSRVEHVQHVY 432
>sp|Q13489|BIRC3_HUMAN Baculoviral IAP repeat-containing protein 3 (Inhibitor of apoptosis
protein 1) (HIAP1) (HIAP-1) (C-IAP2) (TNFR2-TRAF
signaling complex protein 1) (IAP homolog C) (Apoptosis
inhibitor 2) (API2)
Length = 604
Score = 43.5 bits (101), Expect = 1e-04
Identities = 16/42 (38%), Positives = 27/42 (64%)
Frame = +1
Query: 40 CMVCQSDRVSVLYLPCGHVVLCNKCHLATNEGSCRLCKTQIQ 165
C VC VS++++PCGH+V+C C A + C +C++ I+
Sbjct: 557 CKVCMDKEVSIVFIPCGHLVVCKDC--APSLRKCPICRSTIK 596
>sp|Q90660|BIR_CHICK Inhibitor of apoptosis protein (IAP) (Inhibitor of T cell apoptosis
protein)
Length = 611
Score = 43.1 bits (100), Expect = 2e-04
Identities = 16/42 (38%), Positives = 27/42 (64%)
Frame = +1
Query: 40 CMVCQSDRVSVLYLPCGHVVLCNKCHLATNEGSCRLCKTQIQ 165
C VC VS++++PCGH+V+C +C A + C +C+ I+
Sbjct: 564 CKVCMDKEVSIVFIPCGHLVVCKEC--APSLRKCPICRGTIK 603
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,926,113
Number of Sequences: 369166
Number of extensions: 411064
Number of successful extensions: 1180
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1178
length of database: 68,354,980
effective HSP length: 43
effective length of database: 60,411,375
effective search space used: 1691518500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)