Planaria EST Database

DrC_00747

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00747
         (721 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8SX83|SPEN_DROME  Split ends protein                           30   8.5  

>sp|Q8SX83|SPEN_DROME Split ends protein
          Length = 5560

 Score = 29.6 bits (65), Expect = 8.5
 Identities = 26/114 (22%), Positives = 46/114 (40%), Gaps = 4/114 (3%)
 Frame = -2

Query: 420  SARSLTNWATPQPSAA*NIPW--NHRYTPRAFSVVCLSCIPPRCRKICD--TSCLNTLFY 253
            S   L+N +TPQPS    +P+    +  P       +   PP   K+       + T+  
Sbjct: 3471 SQPKLSNESTPQPSVITKLPFLDTPKTVPAGLPPSPVKIEPPTISKLQQPLVQPVQTVLP 3530

Query: 252  LNTFCDSSVSLQSVLAPSWSSSIGTCDHNEEKDSDSSWMCASSYGETHFSLNSL 91
                  S +S  SV+    S+ I +C +     + +S   + S+G    S N++
Sbjct: 3531 APHSTGSGISANSVINLDLSNVISSCSNTSAASATASASASISFGSPTASQNAM 3584

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,380,550
Number of Sequences: 369166
Number of extensions: 1116559
Number of successful extensions: 2965
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 2824
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2957
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 6413660220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00747

  1. Dr_sW_019_H12
  2. Dr_sW_002_D04
  3. Dr_sW_017_I04