Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_017_I04
(467 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O40977|V2A_CMVNT Probable RNA-directed RNA polymerase (2... 29 6.1
sp|O94880|PHF14_HUMAN PHD finger protein 14 28 7.9
sp|Q02951|COAT_CAMVE Coat protein 28 7.9
sp|Q9D4H9|PHF14_MOUSE PHD finger protein 14 28 7.9
>sp|O40977|V2A_CMVNT Probable RNA-directed RNA polymerase (2A protein) (RNA replicase)
Length = 857
Score = 28.9 bits (63), Expect = 6.1
Identities = 15/32 (46%), Positives = 15/32 (46%)
Frame = +1
Query: 13 SDKKYRKSYDSEEEYNSDKRRRTHVEYNGGSK 108
S K RK D E SDKRR Y GG K
Sbjct: 770 SSTKQRKKKDGIERRRSDKRRTPTGSYGGGEK 801
>sp|O94880|PHF14_HUMAN PHD finger protein 14
Length = 888
Score = 28.5 bits (62), Expect = 7.9
Identities = 16/63 (25%), Positives = 29/63 (46%)
Frame = +2
Query: 65 TNDGERTWSITVVPRNISSSRRLWGRPIRQAPXXXXXXXXXXXXXLPRRPRTMPVRDTRT 244
++D E ++ +P SRR P++ P +P P+ +P+R+TRT
Sbjct: 781 SSDMEADMAMETLPDGTKRSRRQIKEPVKFVPQD-----------VPPEPKKIPIRNTRT 829
Query: 245 KQR 253
+ R
Sbjct: 830 RGR 832
>sp|Q02951|COAT_CAMVE Coat protein
Length = 488
Score = 28.5 bits (62), Expect = 7.9
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +1
Query: 1 KKEYSDKKYRKSYDSEEEYNSDKRRRTHVEYNGGSKEYFKQQ 126
KK+Y +K+Y+K Y + Y K+ R+ + K+ KQ+
Sbjct: 361 KKKYHNKRYKKKYKVYKPYKKKKKFRSGKYFKPKEKKGSKQK 402
>sp|Q9D4H9|PHF14_MOUSE PHD finger protein 14
Length = 881
Score = 28.5 bits (62), Expect = 7.9
Identities = 16/63 (25%), Positives = 29/63 (46%)
Frame = +2
Query: 65 TNDGERTWSITVVPRNISSSRRLWGRPIRQAPXXXXXXXXXXXXXLPRRPRTMPVRDTRT 244
++D E ++ +P SRR P++ P +P P+ +P+R+TRT
Sbjct: 774 SSDMEAEMAMETLPDGTKRSRRQIKEPVKFVPQD-----------VPPEPKKIPIRNTRT 822
Query: 245 KQR 253
+ R
Sbjct: 823 RGR 825
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,327,765
Number of Sequences: 369166
Number of extensions: 656417
Number of successful extensions: 2160
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2059
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2147
length of database: 68,354,980
effective HSP length: 101
effective length of database: 49,696,745
effective search space used: 2683624230
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)