Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_019_H12
(360 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P54770|TYD3_PAPSO Tyrosine/DOPA decarboxylase 3 [Include... 29 2.9
sp|Q9BYQ5|KR415_HUMAN Keratin-associated protein 4-15 (Kera... 29 3.8
sp|P0C091|FREM3_HUMAN FRAS1-related extracellular matrix pr... 29 3.8
sp|P54769|TYDC2_PAPSO Tyrosine/DOPA decarboxylase 2 [Includ... 28 4.9
sp|Q80XI1|FBX34_MOUSE F-box only protein 34 28 6.4
sp|P16827|HEPA_HCMVA DNA helicase/primase complex associate... 28 6.4
sp|P40025|YEM7_YEAST Hypothetical 37.7 kDa protein in PIP1-... 28 8.4
>sp|P54770|TYD3_PAPSO Tyrosine/DOPA decarboxylase 3 [Includes: DOPA decarboxylase (DDC);
Tyrosine decarboxylase ]
Length = 533
Score = 29.3 bits (64), Expect = 2.9
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -1
Query: 342 PRAFSVVCVRCIPPRCRKIC 283
PR F++VC R +PP K+C
Sbjct: 419 PRTFAMVCFRLLPPTTVKVC 438
>sp|Q9BYQ5|KR415_HUMAN Keratin-associated protein 4-15 (Keratin-associated protein 4.15)
(Ultrahigh sulfur keratin-associated protein 4.15)
Length = 193
Score = 28.9 bits (63), Expect = 3.8
Identities = 17/53 (32%), Positives = 20/53 (37%)
Frame = -1
Query: 342 PRAFSVVCVRCIPPRCRKICDTSCLNTLFYLNTFCDSSVSLQSVLAPSWSSSI 184
P+ VC C P CR C SC T T C S + S P S+
Sbjct: 36 PQCCQSVC--CQPTCCRPSCCPSCCQTTCCRTTCCRPSCCVSSCCRPQCCQSV 86
>sp|P0C091|FREM3_HUMAN FRAS1-related extracellular matrix protein 3 precursor
Length = 2135
Score = 28.9 bits (63), Expect = 3.8
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Frame = -1
Query: 273 CLNTLFYL----NTFCDSSVSLQSVLAPSWSSSIGTCDHNEEKDSDSSW 139
CL +Y+ +TF + +++ + L + SIGT D +KD D W
Sbjct: 1772 CLEKEYYIVDEDSTFLEVTLTRRGYLGETSFISIGTKDETAKKDKDFKW 1820
>sp|P54769|TYDC2_PAPSO Tyrosine/DOPA decarboxylase 2 [Includes: DOPA decarboxylase (DDC);
Tyrosine decarboxylase ]
Length = 531
Score = 28.5 bits (62), Expect = 4.9
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = -1
Query: 342 PRAFSVVCVRCIPPRCRKICD 280
PR F++VC R +PP+ K+ D
Sbjct: 419 PRTFAMVCFRLLPPKTIKVYD 439
>sp|Q80XI1|FBX34_MOUSE F-box only protein 34
Length = 695
Score = 28.1 bits (61), Expect = 6.4
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -1
Query: 117 ETHFSLNSLFLKHRYLVCLEHHDVISSIYR 28
ET F + L +Y+ CL HH +I I+R
Sbjct: 544 ETRFKIQQLLEPQQYMACLPHH-IIVKIFR 572
>sp|P16827|HEPA_HCMVA DNA helicase/primase complex associated protein
Length = 873
Score = 28.1 bits (61), Expect = 6.4
Identities = 22/69 (31%), Positives = 32/69 (46%)
Frame = -1
Query: 348 YTPRAFSVVCVRCIPPRCRKICDTSCLNTLFYLNTFCDSSVSLQSVLAPSWSSSIGTCDH 169
Y +AF+++ C+ R++ +S +T T C SS L S L SSS GT
Sbjct: 774 YVDKAFAMLTA-CVEVWARELLSSSTAST-----TACSSSSVLSSALPSVTSSSSGTATV 827
Query: 168 NEEKDSDSS 142
+ S SS
Sbjct: 828 SPPSCSSSS 836
>sp|P40025|YEM7_YEAST Hypothetical 37.7 kDa protein in PIP1-GLN3 intergenic region
Length = 321
Score = 27.7 bits (60), Expect = 8.4
Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Frame = -1
Query: 270 LNTLFYLNTFCDSSVSLQSVLAPSWSSSIGTCDHNEEK--DSDSSWMCASSY 121
++ + NTF D S+ LQ L P W + ++K D W+ +SY
Sbjct: 117 IDDVLQYNTFIDDSLPLQDYLKPDWKLRELLINLKKKKLGKFDKLWLFTNSY 168
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,377,169
Number of Sequences: 369166
Number of extensions: 625817
Number of successful extensions: 1670
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1591
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1669
length of database: 68,354,980
effective HSP length: 87
effective length of database: 52,283,035
effective search space used: 1673057120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)