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Planaria EST Database

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00746
         (705 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P04931|ARP_PLAFA  Asparagine-rich protein (AG319) (ARP)         37   0.039
sp|Q22366|RIM_CAEEL  Rab-3 interacting molecule unc-10 (Rim)...    37   0.039
sp|O43952|TGP1_TETTH  G-quartet DNA binding protein TGP1           36   0.11 
sp|Q4A0V8|UAFA_STAS1  Uro-adherence factor A precursor             35   0.15 
sp|P34756|FAB1_YEAST  1-phosphatidylinositol-3-phosphate 5-k...    34   0.43 
sp|P14196|AAC2_DICDI  AAC-rich mRNA clone AAC11 protein            34   0.43 
sp|P40957|MAD1_YEAST  Spindle assembly checkpoint component ...    33   0.57 
sp|P54677|PI4K_DICDI  Phosphatidylinositol 4-kinase (PI4-kin...    33   0.57 
sp|Q17060|MRJP3_APIME  Major royal jelly protein 3 precursor...    33   0.74 
sp|P54673|PI3K1_DICDI  Phosphatidylinositol 3-kinase 1 (PI3-...    32   1.6  

>sp|P04931|ARP_PLAFA Asparagine-rich protein (AG319) (ARP)
          Length = 537

 Score = 37.4 bits (85), Expect = 0.039
 Identities = 33/173 (19%), Positives = 65/173 (37%), Gaps = 9/173 (5%)
 Frame = +1

Query: 1   NKASEKGHFISNRQDKPGRNV---GHNQNMNVKN-YSKHENTSQNGNLRNVDSVPLLKRQ 168
           N+ +    F+ N  +   +N    G N N++ KN Y  + ++ +N +    D+   +K  
Sbjct: 81  NQQTRFSSFMENENENENKNYHTGGMNNNIHFKNKYDNNNSSMKNTDNNKTDTSYNMKGT 140

Query: 169 PDQYRQIDKY--NVENLLQSFGRNVSXXXXXXXXXXXXXXXXXXXXXXXVKNEVRSKINN 342
            +       Y  N+ N+ +  G   +                       +  +  +  NN
Sbjct: 141 INNDNNNMDYLRNINNINEYKGSAKNKFYTNYMNKNNLKFTQNNNDNMNINEDNNNNNNN 200

Query: 343 GPYQNG---NVQNFSKNKNEAVNKNDKINNDSRLRGQAAQLRQLDKNNGGQLN 492
               NG   N QN + N+N ++N    +NN++ +     ++   DKN     N
Sbjct: 201 NNNNNGVFSNYQNNNMNRNNSINIKRNLNNNNNINNNMNKMGSQDKNQNSNNN 253

 Score = 33.1 bits (74), Expect = 0.74
 Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
 Frame = +1

Query: 316 NEVRSKINNGPYQNGNVQNF-SKNKNEAVNKNDKINNDSRLRGQAAQLRQLDKNNGGQLN 492
           N + S +NN      N++N  S+NKN A N ND +NN              +KNN   +N
Sbjct: 403 NNMNSAVNNNSSNGNNMKNENSENKNVADN-NDSLNN--------------NKNNNNNIN 447

Query: 493 KGDVHVLNKIIHNPNFESNK 552
             +    N  ++N N  +N+
Sbjct: 448 MNESINNNNTLNNNNEYNNQ 467

 Score = 30.4 bits (67), Expect = 4.8
 Identities = 34/146 (23%), Positives = 55/146 (37%), Gaps = 1/146 (0%)
 Frame = +1

Query: 1   NKASEKGHFISNRQDKPGRNVGHNQNMNVKNYSKHENTSQNGNLRNVDSVPLLKRQPDQY 180
           N  +  G F SN Q+    N+  N ++N+K  + + N + N N+  + S    K Q    
Sbjct: 200 NNNNNNGVF-SNYQNN---NMNRNNSINIKR-NLNNNNNINNNMNKMGSQD--KNQNSNN 252

Query: 181 RQIDKYNVENLLQSFGRNVSXXXXXXXXXXXXXXXXXXXXXXXVKNEVRSKINNGPYQN- 357
                YN +N   S   N++                       + N +   +NN    N 
Sbjct: 253 NFYMNYNYQNRKNSMNNNMNNN---------------------MNNNMNHNMNNNMNHNM 291

Query: 358 GNVQNFSKNKNEAVNKNDKINNDSRL 435
            N  N + N N   N N+ +NN + L
Sbjct: 292 NNNMNHNMNNNMNHNMNNNMNNINSL 317

 Score = 30.0 bits (66), Expect = 6.2
 Identities = 36/173 (20%), Positives = 65/173 (37%), Gaps = 1/173 (0%)
 Frame = +1

Query: 34  NRQDKPGRNVGHNQNMNVKNYSKHENTSQNGNLRNVDSVPLLKRQPDQYRQIDKYNVENL 213
           N +++   N   ++NMN  N     N++   +LRN +S+ +     + Y      N +  
Sbjct: 32  NFKNQYNNNYKFDENMNNSNTMHSRNSNVEEHLRN-NSIDMNNSNINNYT-----NQQTR 85

Query: 214 LQSFGRNVSXXXXXXXXXXXXXXXXXXXXXXXVKNEVRSKINNGPYQNGNVQNFSKNKNE 393
             SF  N +                       + N +  K N     N +++N   NK +
Sbjct: 86  FSSFMENEN------------ENENKNYHTGGMNNNIHFK-NKYDNNNSSMKNTDNNKTD 132

Query: 394 -AVNKNDKINNDSRLRGQAAQLRQLDKNNGGQLNKGDVHVLNKIIHNPNFESN 549
            + N    INND+        +  +++  G   NK   + +NK  +N  F  N
Sbjct: 133 TSYNMKGTINNDNNNMDYLRNINNINEYKGSAKNKFYTNYMNK--NNLKFTQN 183

>sp|Q22366|RIM_CAEEL Rab-3 interacting molecule unc-10 (Rim) (Uncoordinated protein 10)
          Length = 1563

 Score = 37.4 bits (85), Expect = 0.039
 Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
 Frame = +1

Query: 337 NNGPYQNGN---VQNFSKNKNEAVNKNDKINNDSRLRGQAAQLRQLDKNNGGQLNKGDVH 507
           N  P QN N   +QN  +N+N   N +   NN  +   +A Q + + +N   Q+N+ + +
Sbjct: 206 NQHPNQNHNQNQMQNPHQNQNHVQNNHQGANNHQQNNRRAMQQQPMSQNQANQINQMNQN 265

Query: 508 VLNKIIHNPNFESNKK 555
              +  HN N   N++
Sbjct: 266 QNQQQSHNQNMTQNQR 281

>sp|O43952|TGP1_TETTH G-quartet DNA binding protein TGP1
          Length = 725

 Score = 35.8 bits (81), Expect = 0.11
 Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 6/78 (7%)
 Frame = +1

Query: 337 NNGP--YQNGNVQNFSKNKNE----AVNKNDKINNDSRLRGQAAQLRQLDKNNGGQLNKG 498
           NN P  Y+N +VQN + NKN+    + N+    N D+R  G+    RQ ++NN    N G
Sbjct: 513 NNQPNKYKNTSVQNNNNNKNQQRSQSQNQRPPRNYDNRQGGENRNNRQRNENNRNNFN-G 571

Query: 499 DVHVLNKIIHNPNFESNK 552
           + H +N    N N + N+
Sbjct: 572 NGHRVN----NQNNQRNR 585

 Score = 30.0 bits (66), Expect = 6.2
 Identities = 36/158 (22%), Positives = 53/158 (33%), Gaps = 1/158 (0%)
 Frame = +1

Query: 34  NRQDKPGRNVGHNQN-MNVKNYSKHENTSQNGNLRNVDSVPLLKRQPDQYRQIDKYNVEN 210
           N Q     N  H+QN  N +N  KH N+  N              QP++Y+     +V+N
Sbjct: 484 NHQGGQRGNRSHSQNNRNQRNRDKHHNSQNN--------------QPNKYKNT---SVQN 526

Query: 211 LLQSFGRNVSXXXXXXXXXXXXXXXXXXXXXXXVKNEVRSKINNGPYQNGNVQNFSKNKN 390
              +  +  S                        +NE      NG     N QN  +N+N
Sbjct: 527 NNNNKNQQRSQSQNQRPPRNYDNRQGGENRNNRQRNENNRNNFNGNGHRVNNQNNQRNRN 586

Query: 391 EAVNKNDKINNDSRLRGQAAQLRQLDKNNGGQLNKGDV 504
            +  +N   NN      Q   +  L+    GQ   G V
Sbjct: 587 SSYPRN---NNYDHHHNQQTDISGLEPGKRGQNVTGQV 621

>sp|Q4A0V8|UAFA_STAS1 Uro-adherence factor A precursor
          Length = 2316

 Score = 35.4 bits (80), Expect = 0.15
 Identities = 27/144 (18%), Positives = 57/144 (39%), Gaps = 1/144 (0%)
 Frame = +1

Query: 1   NKASEKGHFISNRQDKPGRNVGHNQNMNVKNYSKHENTSQNGNLRNVDSVPLLKRQPDQY 180
           +K+SE      N QD    +  H      +N+ K E+   +    +++     +   ++ 
Sbjct: 105 DKSSEYDQKPINEQDTSNHHETHLNQNATENHVKEESKEVSTEEESIEDRKTEESTTEES 164

Query: 181 RQIDKYNVENLLQSFGR-NVSXXXXXXXXXXXXXXXXXXXXXXXVKNEVRSKINNGPYQN 357
           + +++ N EN  +     ++                          + + +K+ +  Y+N
Sbjct: 165 KAVEEANKENTTEKNDEGSLDLEKEKDTYKDEKDNGKKKNELESHNHRIENKVEDNVYKN 224

Query: 358 GNVQNFSKNKNEAVNKNDKINNDS 429
               N  ++KNE VNK+DK+N  S
Sbjct: 225 NKETNL-ESKNENVNKDDKVNTSS 247

>sp|P34756|FAB1_YEAST 1-phosphatidylinositol-3-phosphate 5-kinase FAB1
           (Phosphatidylinositol-3-phosphate 5-kinase) (Type III
           PIP kinase)
          Length = 2278

 Score = 33.9 bits (76), Expect = 0.43
 Identities = 36/159 (22%), Positives = 50/159 (31%), Gaps = 3/159 (1%)
 Frame = +1

Query: 67  HNQNMNVKNYSKHENTSQNGNLRNVDSVPLLKRQPDQYRQIDKYNVENLLQSFGRNVSXX 246
           +N N    N S + NT+ N N+ N              R I  Y   N +     N S  
Sbjct: 475 NNLNNTTSNNSNYNNTNSNSNINNPAH--------SLRRSIFHYVSSNSVNKDSNNSSAT 526

Query: 247 XXXXXXXXXXXXXXXXXXXXXVKNEVRSKIN---NGPYQNGNVQNFSKNKNEAVNKNDKI 417
                                     + K N    GP Q  +  N + + N   N N+  
Sbjct: 527 PASSAQSSSILDPANRIIGNYAHRNYKFKFNYNSKGPSQQNDTANGNNDNNNNNNNNNNN 586

Query: 418 NNDSRLRGQAAQLRQLDKNNGGQLNKGDVHVLNKIIHNP 534
           NN++   G A      D NN    + G    L+K   NP
Sbjct: 587 NNNNSASGIA------DNNNIPSNDNGTTFTLDKKKRNP 619

>sp|P14196|AAC2_DICDI AAC-rich mRNA clone AAC11 protein
          Length = 448

 Score = 33.9 bits (76), Expect = 0.43
 Identities = 19/78 (24%), Positives = 30/78 (38%)
 Frame = +1

Query: 316 NEVRSKINNGPYQNGNVQNFSKNKNEAVNKNDKINNDSRLRGQAAQLRQLDKNNGGQLNK 495
           N + +  NN    N N  N + N N + N N   NN++              NN    N 
Sbjct: 283 NNINNNNNNNSNNNNNSSNNNNNNNNSTNNNTN-NNNNNTNNNTNNNNNNINNNNNNTNN 341

Query: 496 GDVHVLNKIIHNPNFESN 549
            + +  N+  +N N  +N
Sbjct: 342 NNNNANNQNTNNNNMGNN 359

 Score = 31.2 bits (69), Expect = 2.8
 Identities = 18/71 (25%), Positives = 30/71 (42%)
 Frame = +1

Query: 337 NNGPYQNGNVQNFSKNKNEAVNKNDKINNDSRLRGQAAQLRQLDKNNGGQLNKGDVHVLN 516
           NN    N N+ N + N N   N N+  +N++     +      + NN    N  + +  N
Sbjct: 273 NNNNNNNSNINNINNNNNNNSNNNNNSSNNNNNNNNSTNNNTNNNNNNTNNNTNNNN--N 330

Query: 517 KIIHNPNFESN 549
            I +N N  +N
Sbjct: 331 NINNNNNNTNN 341

 Score = 30.8 bits (68), Expect = 3.7
 Identities = 24/124 (19%), Positives = 42/124 (33%)
 Frame = +1

Query: 58  NVGHNQNMNVKNYSKHENTSQNGNLRNVDSVPLLKRQPDQYRQIDKYNVENLLQSFGRNV 237
           N  +N N N+ N + + N + N N  + ++        +     +  N  N   +   N+
Sbjct: 273 NNNNNNNSNINNINNNNNNNSNNNNNSSNNNNNNNNSTNNNTNNNNNNTNNNTNNNNNNI 332

Query: 238 SXXXXXXXXXXXXXXXXXXXXXXXVKNEVRSKINNGPYQNGNVQNFSKNKNEAVNKNDKI 417
           +                         N   +  NN    N N+ N S N N   N N + 
Sbjct: 333 NNNNNN-------------------TNNNNNNANNQNTNNNNMGNNSNNNNNPNNNNHQN 373

Query: 418 NNDS 429
           NN++
Sbjct: 374 NNNN 377

 Score = 30.0 bits (66), Expect = 6.2
 Identities = 20/80 (25%), Positives = 31/80 (38%), Gaps = 2/80 (2%)
 Frame = +1

Query: 316 NEVRSKINNGPYQNGNVQNFSKNKNEAVNKNDK--INNDSRLRGQAAQLRQLDKNNGGQL 489
           N   S  NN    N N  N + N N  +N N+    NN++    Q      +  N+    
Sbjct: 305 NNNNSTNNNTNNNNNNTNNNTNNNNNNINNNNNNTNNNNNNANNQNTNNNNMGNNSNNNN 364

Query: 490 NKGDVHVLNKIIHNPNFESN 549
           N  + +  N   +N +  SN
Sbjct: 365 NPNNNNHQNNNNNNTSNNSN 384

>sp|P40957|MAD1_YEAST Spindle assembly checkpoint component MAD1 (Mitotic arrest
           deficient protein 1)
          Length = 749

 Score = 33.5 bits (75), Expect = 0.57
 Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 8/87 (9%)
 Frame = +1

Query: 313 KNEVRSKINNGPYQNGNVQNFSKNKNEAVNKNDKINNDSRLRGQAAQL-------RQLDK 471
           KN+  +  NN    N N+ N ++ KN   N  ++I  D +L  +   +        +LD 
Sbjct: 342 KNDNNNDNNNDTSNNNNINNNNRTKNNIRNNPEEIIRDWKLTKKECLILTDMNDKLRLDN 401

Query: 472 NNGGQLNKGDVHVLNKIIH-NPNFESN 549
           NN   LN       N+I+  N N+E+N
Sbjct: 402 NNLKLLNDEMALERNQILDLNKNYENN 428

>sp|P54677|PI4K_DICDI Phosphatidylinositol 4-kinase (PI4-kinase) (PtdIns-4-kinase)
           (PI4K-alpha)
          Length = 1093

 Score = 33.5 bits (75), Expect = 0.57
 Identities = 35/165 (21%), Positives = 57/165 (34%)
 Frame = +1

Query: 13  EKGHFISNRQDKPGRNVGHNQNMNVKNYSKHENTSQNGNLRNVDSVPLLKRQPDQYRQID 192
           E  H I N   K   +  +N N    N S +++ + N  L N +S   +  + +QY    
Sbjct: 170 ENDHHIENDPKKDINSNNNNNNNINNNNSNNDDNNNNEILPNENSDNSINDENNQY---G 226

Query: 193 KYNVENLLQSFGRNVSXXXXXXXXXXXXXXXXXXXXXXXVKNEVRSKINNGPYQNGNVQN 372
             N  N +     N+                         K    S I +    N N  N
Sbjct: 227 NSNNNNNISGENNNIKIDINSQNKSDSNIETLNSTLCEETKT---SPIKDDMENNNNNNN 283

Query: 373 FSKNKNEAVNKNDKINNDSRLRGQAAQLRQLDKNNGGQLNKGDVH 507
            + N N   N N+ INN++        +   + NN   +N G ++
Sbjct: 284 NNNNNNNNNNNNNNINNNN--------INNNNINNNNNINYGHIN 320

>sp|Q17060|MRJP3_APIME Major royal jelly protein 3 precursor (MRJP-3) (Bee-milk protein)
           (Royal jelly protein RJP57-1)
          Length = 544

 Score = 33.1 bits (74), Expect = 0.74
 Identities = 36/152 (23%), Positives = 55/152 (36%)
 Frame = +1

Query: 67  HNQNMNVKNYSKHENTSQNGNLRNVDSVPLLKRQPDQYRQIDKYNVENLLQSFGRNVSXX 246
           HNQN   +N       +QN N +N D+    K+  +  RQ D    +N      +N +  
Sbjct: 423 HNQNAGNQNADNQNADNQNANNQNADNQNANKQNGN--RQNDNRQNDNKQNGNRQNDNKQ 480

Query: 247 XXXXXXXXXXXXXXXXXXXXXVKNEVRSKINNGPYQNGNVQNFSKNKNEAVNKNDKINND 426
                                  N       NG  QNGN QN +K       +N    ND
Sbjct: 481 NG---------------------NRQNDNKQNGNRQNGNKQNDNK-------QNGNRQND 512

Query: 427 SRLRGQAAQLRQLDKNNGGQLNKGDVHVLNKI 522
           ++  G      Q ++N+  + N   VH  +K+
Sbjct: 513 NKRNGNRQNDNQNNQNDNNR-NDNQVHHSSKL 543

>sp|P54673|PI3K1_DICDI Phosphatidylinositol 3-kinase 1 (PI3-kinase) (PtdIns-3-kinase)
           (PI3K)
          Length = 1570

 Score = 32.0 bits (71), Expect = 1.6
 Identities = 26/83 (31%), Positives = 37/83 (44%)
 Frame = +1

Query: 313 KNEVRSKINNGPYQNGNVQNFSKNKNEAVNKNDKINNDSRLRGQAAQLRQLDKNNGGQLN 492
           KN   S  NN  + N  +     NKN   N ND  NN++ +     + R+  KN   Q  
Sbjct: 34  KNNSTSSNNNNNHNNIEIIGIDNNKNNNKNNNDNNNNNNNI----DKKRKDSKNKQNQEI 89

Query: 493 KGDVHVLNKIIHNPNFESNKKFG 561
             ++   NK I+N N +SN   G
Sbjct: 90  NQEMSE-NKKIYNSN-DSNCSSG 110

 Score = 30.0 bits (66), Expect = 6.2
 Identities = 21/81 (25%), Positives = 31/81 (38%), Gaps = 1/81 (1%)
 Frame = +1

Query: 316 NEVRSKIN-NGPYQNGNVQNFSKNKNEAVNKNDKINNDSRLRGQAAQLRQLDKNNGGQLN 492
           NE+    N N  + N N  N  KN + + N N+  NN         ++  +D N     N
Sbjct: 12  NEINKNSNKNNTHLNSNYNNIYKNNSTSSNNNNNHNN--------IEIIGIDNNKNNNKN 63

Query: 493 KGDVHVLNKIIHNPNFESNKK 555
             D +  N  I     +S  K
Sbjct: 64  NNDNNNNNNNIDKKRKDSKNK 84

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.316    0.133    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,731,506
Number of Sequences: 369166
Number of extensions: 1225197
Number of successful extensions: 4563
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3280
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3943
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 6170718545
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)

Cluster detail

1. Dr_sW_010_A19
2. Dr_sW_019_G21