Planaria EST Database

DrC_00721

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00721
         (1148 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P27571|XIST_MOUSE  X inactive-specific transcript protein       31   7.6  
sp|Q9TX43|CAR4_DICDI  Cyclic AMP receptor 4 (cAMP receptor 4)      30   10.0 
sp|P04540|NU5M_TRYBB  NADH-ubiquinone oxidoreductase chain 5...    30   10.0 

>sp|P27571|XIST_MOUSE X inactive-specific transcript protein
          Length = 298

 Score = 30.8 bits (68), Expect = 7.6
 Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
 Frame = +1

Query: 589 PILLCNLSI*T*HCCLISCFIYL*CYCFLINAVNICIPVR*LIFPIIISRNRL*-MC*VA 765
           P++LC+ S+    C  IS F  L     L++ VN C+      FP  +    L     V+
Sbjct: 177 PLVLCSSSL----CQSISVFFLL-----LLSLVNSCLH----FFPAFLGPLSLFSFVFVS 223

Query: 766 LCFYCIFSIYLKYVSLLLP*CAVLCRYVI 852
           LC++     ++ Y+S++L  C  LC Y++
Sbjct: 224 LCYW-----WISYLSIILLLCVCLCFYLL 247

>sp|Q9TX43|CAR4_DICDI Cyclic AMP receptor 4 (cAMP receptor 4)
          Length = 443

 Score = 30.4 bits (67), Expect = 10.0
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = -3

Query: 783 NTIETQRNSTHL*TISRNNNWENQLSNRNADIYSIDEK 670
           N+ E  + S  L TI  NNN+ N  +N N +   I+EK
Sbjct: 396 NSFEITQPSNDLNTIENNNNYNNNNNNNNNNSLVIEEK 433

>sp|P04540|NU5M_TRYBB NADH-ubiquinone oxidoreductase chain 5 (NADH dehydrogenase subunit 5)
          Length = 590

 Score = 30.4 bits (67), Expect = 10.0
 Identities = 40/172 (23%), Positives = 71/172 (41%), Gaps = 23/172 (13%)
 Frame = +2

Query: 644  VLFIYSVIVFSSML*ISAFLLDN*FSQL--LFLEIVYRCVELRCV--------SIVFLVS 793
            ++FI+  ++++  L      +   F  +  LFL   Y C  + C+        SI F++ 
Sbjct: 416  IIFIFFTMIYNYFLLFFLMFVFKCFCLVDCLFLLFDYECCLVYCLISLYMCILSIFFIID 475

Query: 794  I*NMYHCSSLNVLCCAVM*SH------LFVCHLLLVDYHP*Y*CCTLFRF----IYLCW- 940
               ++  SS  V     +  +      +FV  L+L      Y C   + F    I L W 
Sbjct: 476  FVCIFVFSSYCVFWSFFLNFYNFFDIAIFVVFLILSVGFLYYGCLFFYFFNIDCIMLFWR 535

Query: 941  IYLLFLSMAAFMKRLSHHYC--YFIFTITIVLLPYWELLMYIRW**IYLFYF 1090
            I+ + + +  FM      +C  YF+  I  +LL  W  ++Y R+   Y  +F
Sbjct: 536  IFFVIIILVVFMI-----FCCWYFVCMIIFMLLFVWNFVIYFRYNLKYCLFF 582

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 123,109,813
Number of Sequences: 369166
Number of extensions: 2489903
Number of successful extensions: 4978
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4735
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4972
length of database: 68,354,980
effective HSP length: 112
effective length of database: 47,664,660
effective search space used: 12869458200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00721

  1. Dr_sW_018_M12
  2. Dr_sW_020_E21