Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_020_E21
(750 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P27571|XIST_MOUSE X inactive-specific transcript protein 31 4.1
sp|Q9TX43|CAR4_DICDI Cyclic AMP receptor 4 (cAMP receptor 4) 30 5.3
sp|P04540|NU5M_TRYBB NADH-ubiquinone oxidoreductase chain 5... 30 5.3
>sp|P27571|XIST_MOUSE X inactive-specific transcript protein
Length = 298
Score = 30.8 bits (68), Expect = 4.1
Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Frame = +2
Query: 191 PILLCNLSI*T*HCCLISCFIYL*CYCFLINAVNICIPVR*LIFPIIISRNRL*-MC*VA 367
P++LC+ S+ C IS F L L++ VN C+ FP + L V+
Sbjct: 177 PLVLCSSSL----CQSISVFFLL-----LLSLVNSCLH----FFPAFLGPLSLFSFVFVS 223
Query: 368 LCFYCIFSIYLKYVSLLLP*CAVLCRYVI 454
LC++ ++ Y+S++L C LC Y++
Sbjct: 224 LCYW-----WISYLSIILLLCVCLCFYLL 247
>sp|Q9TX43|CAR4_DICDI Cyclic AMP receptor 4 (cAMP receptor 4)
Length = 443
Score = 30.4 bits (67), Expect = 5.3
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = -3
Query: 385 NTIETQRNSTHL*TISRNNNWENQLSNRNADIYSIDEK 272
N+ E + S L TI NNN+ N +N N + I+EK
Sbjct: 396 NSFEITQPSNDLNTIENNNNYNNNNNNNNNNSLVIEEK 433
>sp|P04540|NU5M_TRYBB NADH-ubiquinone oxidoreductase chain 5 (NADH dehydrogenase subunit
5)
Length = 590
Score = 30.4 bits (67), Expect = 5.3
Identities = 40/172 (23%), Positives = 71/172 (41%), Gaps = 23/172 (13%)
Frame = +3
Query: 246 VLFIYSVIVFSSML*ISAFLLDN*FSQL--LFLEIVYRCVELRCV--------SIVFLVS 395
++FI+ ++++ L + F + LFL Y C + C+ SI F++
Sbjct: 416 IIFIFFTMIYNYFLLFFLMFVFKCFCLVDCLFLLFDYECCLVYCLISLYMCILSIFFIID 475
Query: 396 I*NMYHCSSLNVLCCAVM*SH------LFVCHLLLVDYHP*Y*CCTLFRF----IYLCW- 542
++ SS V + + +FV L+L Y C + F I L W
Sbjct: 476 FVCIFVFSSYCVFWSFFLNFYNFFDIAIFVVFLILSVGFLYYGCLFFYFFNIDCIMLFWR 535
Query: 543 IYLLFLSMAAFMKRLSHHYC--YFIFTITIVLLPYWELLMYIRW**IYLFYF 692
I+ + + + FM +C YF+ I +LL W ++Y R+ Y +F
Sbjct: 536 IFFVIIILVVFMI-----FCCWYFVCMIIFMLLFVWNFVIYFRYNLKYCLFF 582
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,011,158
Number of Sequences: 369166
Number of extensions: 1806047
Number of successful extensions: 3593
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3454
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3588
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6824907600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)