Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_018_M12
(906 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P27571|XIST_MOUSE X inactive-specific transcript protein 32 2.4
sp|Q9TX43|CAR4_DICDI Cyclic AMP receptor 4 (cAMP receptor 4) 30 7.1
>sp|P27571|XIST_MOUSE X inactive-specific transcript protein
Length = 298
Score = 32.0 bits (71), Expect = 2.4
Identities = 30/109 (27%), Positives = 54/109 (49%), Gaps = 3/109 (2%)
Frame = +1
Query: 589 PILLCNLSI*T*HCCLISCFIYL*CYCFLINAVNICIPVR*LIFPIIISRNRL*-MC*VA 765
P++LC+ S+ C IS F L L++ VN C+ FP + L V+
Sbjct: 177 PLVLCSSSL----CQSISVFFLL-----LLSLVNSCLH----FFPAFLGPLSLFSFVFVS 223
Query: 766 LCFYCIFSIYLKYVSLLLP*CAVLCRYVI--AFICVPFVTS*LSSIILM 906
LC++ ++ Y+S++L C LC Y++ +F+ ++S S+ L+
Sbjct: 224 LCYW-----WISYLSIILLLCVCLCFYLLLSSFLFTLSISSLYKSVSLL 267
>sp|Q9TX43|CAR4_DICDI Cyclic AMP receptor 4 (cAMP receptor 4)
Length = 443
Score = 30.4 bits (67), Expect = 7.1
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = -1
Query: 783 NTIETQRNSTHL*TISRNNNWENQLSNRNADIYSIDEK 670
N+ E + S L TI NNN+ N +N N + I+EK
Sbjct: 396 NSFEITQPSNDLNTIENNNNYNNNNNNNNNNSLVIEEK 433
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 94,138,121
Number of Sequences: 369166
Number of extensions: 1840059
Number of successful extensions: 3811
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3643
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3804
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9174518830
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)