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Planaria EST Database

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00720
         (579 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P63025|VAMP3_RAT  Vesicle-associated membrane protein 3 (...    82   1e-15
sp|Q15836|VAM3_HUMAN  Vesicle-associated membrane protein 3 ...    81   2e-15
sp|P47193|VAMP2_XENLA  Vesicle-associated membrane protein 2...    80   4e-15
sp|Q27236|SYBL_SCHMA  Synaptobrevin-like protein                   80   5e-15
sp|P63026|VAMP2_BOVIN  Vesicle-associated membrane protein 2...    78   2e-14
sp|P63045|VAMP2_RAT  Vesicle-associated membrane protein 2 (...    78   2e-14
sp|Q62442|VAMP1_MOUSE  Vesicle-associated membrane protein 1...    75   9e-14
sp|P13701|SYB_TORCA  Synaptobrevin (Synaptic vesicle-associa...    74   2e-13
sp|P47194|SYB_LOLPE  Synaptobrevin                                 74   2e-13
sp|P23763|VAM1_HUMAN  Vesicle-associated membrane protein 1 ...    74   3e-13

>sp|P63025|VAMP3_RAT Vesicle-associated membrane protein 3 (VAMP-3) (Synaptobrevin-3)
           (Cellubrevin) (CEB)
 sp|P63024|VAMP3_MOUSE Vesicle-associated membrane protein 3 (VAMP-3) (Synaptobrevin-3)
           (Cellubrevin) (CEB)
          Length = 103

 Score = 82.0 bits (201), Expect = 1e-15
 Identities = 37/75 (49%), Positives = 51/75 (68%)
 Frame = +2

Query: 53  SSYGYQSNPKLKNVQQQVDQLTDSMRKNMDKVLERDKNLDDLNVRAQDMEGNAREFHASA 232
           SS    SN +L+  Q QVD++ D MR N+DKVLERD+ L +L+ RA  ++  A +F  SA
Sbjct: 9   SSAATGSNRRLQQTQNQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSA 68

Query: 233 VKARRKFWWQNMKMW 277
            K +RK+WW+N KMW
Sbjct: 69  AKLKRKYWWKNCKMW 83

>sp|Q15836|VAM3_HUMAN Vesicle-associated membrane protein 3 (VAMP-3) (Synaptobrevin 3)
           (Cellubrevin) (CEB)
          Length = 100

 Score = 81.3 bits (199), Expect = 2e-15
 Identities = 35/69 (50%), Positives = 49/69 (71%)
 Frame = +2

Query: 71  SNPKLKNVQQQVDQLTDSMRKNMDKVLERDKNLDDLNVRAQDMEGNAREFHASAVKARRK 250
           SN +L+  Q QVD++ D MR N+DKVLERD+ L +L+ RA  ++  A +F  SA K +RK
Sbjct: 11  SNRRLQQTQNQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRK 70

Query: 251 FWWQNMKMW 277
           +WW+N KMW
Sbjct: 71  YWWKNCKMW 79

>sp|P47193|VAMP2_XENLA Vesicle-associated membrane protein 2 (VAMP-2) (Synaptobrevin-2)
           (SYBII)
          Length = 114

 Score = 80.1 bits (196), Expect = 4e-15
 Identities = 37/77 (48%), Positives = 50/77 (64%)
 Frame = +2

Query: 44  APNSSYGYQSNPKLKNVQQQVDQLTDSMRKNMDKVLERDKNLDDLNVRAQDMEGNAREFH 223
           AP       SN +L+  Q QVD++ D MR N+DKVLERD  L +L+ RA  ++  A +F 
Sbjct: 17  APQGPPNLTSNRRLQQTQAQVDEVVDIMRVNVDKVLERDTKLSELDDRADALQAGASQFE 76

Query: 224 ASAVKARRKFWWQNMKM 274
            SA K +RK+WW+NMKM
Sbjct: 77  TSAAKLKRKYWWKNMKM 93

>sp|Q27236|SYBL_SCHMA Synaptobrevin-like protein
          Length = 131

 Score = 79.7 bits (195), Expect = 5e-15
 Identities = 36/69 (52%), Positives = 51/69 (73%)
 Frame = +2

Query: 68  QSNPKLKNVQQQVDQLTDSMRKNMDKVLERDKNLDDLNVRAQDMEGNAREFHASAVKARR 247
           ++N +L+  Q QV+++ D MR N+DKVLERDKNL +L+ RA  ++  A +F ASA K +R
Sbjct: 14  KTNKRLQQTQAQVNEVVDIMRVNVDKVLERDKNLSELDGRADALQAGASQFEASAGKLKR 73

Query: 248 KFWWQNMKM 274
           KFWW+N KM
Sbjct: 74  KFWWKNCKM 82

>sp|P63026|VAMP2_BOVIN Vesicle-associated membrane protein 2 (VAMP-2) (Synaptobrevin-2)
 sp|P63027|VAM2_HUMAN Vesicle-associated membrane protein 2 (VAMP-2) (Synaptobrevin 2)
          Length = 116

 Score = 77.8 bits (190), Expect = 2e-14
 Identities = 34/68 (50%), Positives = 49/68 (72%)
 Frame = +2

Query: 71  SNPKLKNVQQQVDQLTDSMRKNMDKVLERDKNLDDLNVRAQDMEGNAREFHASAVKARRK 250
           SN +L+  Q QVD++ D MR N+DKVLERD+ L +L+ RA  ++  A +F  SA K +RK
Sbjct: 28  SNRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRK 87

Query: 251 FWWQNMKM 274
           +WW+N+KM
Sbjct: 88  YWWKNLKM 95

>sp|P63045|VAMP2_RAT Vesicle-associated membrane protein 2 (VAMP-2) (Synaptobrevin-2)
 sp|P63044|VAMP2_MOUSE Vesicle-associated membrane protein 2 (VAMP-2) (Synaptobrevin-2)
          Length = 116

 Score = 77.8 bits (190), Expect = 2e-14
 Identities = 34/68 (50%), Positives = 49/68 (72%)
 Frame = +2

Query: 71  SNPKLKNVQQQVDQLTDSMRKNMDKVLERDKNLDDLNVRAQDMEGNAREFHASAVKARRK 250
           SN +L+  Q QVD++ D MR N+DKVLERD+ L +L+ RA  ++  A +F  SA K +RK
Sbjct: 28  SNRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRK 87

Query: 251 FWWQNMKM 274
           +WW+N+KM
Sbjct: 88  YWWKNLKM 95

>sp|Q62442|VAMP1_MOUSE Vesicle-associated membrane protein 1 (VAMP-1) (Synaptobrevin-1)
          Length = 118

 Score = 75.5 bits (184), Expect = 9e-14
 Identities = 33/68 (48%), Positives = 49/68 (72%)
 Frame = +2

Query: 71  SNPKLKNVQQQVDQLTDSMRKNMDKVLERDKNLDDLNVRAQDMEGNAREFHASAVKARRK 250
           SN +L+  Q QV+++ D MR N+DKVLERD+ L +L+ RA  ++  A +F +SA K +RK
Sbjct: 30  SNRRLQQTQAQVEEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFESSAAKLKRK 89

Query: 251 FWWQNMKM 274
           +WW+N KM
Sbjct: 90  YWWKNCKM 97

>sp|P13701|SYB_TORCA Synaptobrevin (Synaptic vesicle-associated integral membrane
           protein) (VAMP-1)
          Length = 120

 Score = 74.3 bits (181), Expect = 2e-13
 Identities = 33/76 (43%), Positives = 51/76 (67%)
 Frame = +2

Query: 47  PNSSYGYQSNPKLKNVQQQVDQLTDSMRKNMDKVLERDKNLDDLNVRAQDMEGNAREFHA 226
           P +     SN +L+  Q QV+++ D +R N+DKVLERD+ L +L+ RA  ++  A +F +
Sbjct: 24  PGAPPNTTSNRRLQQTQAQVEEVVDIIRVNVDKVLERDQKLSELDDRADALQAGASQFES 83

Query: 227 SAVKARRKFWWQNMKM 274
           SA K +RK+WW+N KM
Sbjct: 84  SAAKLKRKYWWKNCKM 99

>sp|P47194|SYB_LOLPE Synaptobrevin
          Length = 125

 Score = 74.3 bits (181), Expect = 2e-13
 Identities = 33/69 (47%), Positives = 48/69 (69%)
 Frame = +2

Query: 68  QSNPKLKNVQQQVDQLTDSMRKNMDKVLERDKNLDDLNVRAQDMEGNAREFHASAVKARR 247
           Q + +L+  Q QV+++ D MR N+DKVLERD  + +L+ RA  ++  A +F ASA K +R
Sbjct: 36  QQSKRLQQTQAQVEEVVDIMRVNVDKVLERDSKISELDDRADALQAGASQFEASAGKLKR 95

Query: 248 KFWWQNMKM 274
           KFWW+N KM
Sbjct: 96  KFWWKNCKM 104

>sp|P23763|VAM1_HUMAN Vesicle-associated membrane protein 1 (VAMP-1) (Synaptobrevin 1)
          Length = 118

 Score = 73.9 bits (180), Expect = 3e-13
 Identities = 32/68 (47%), Positives = 49/68 (72%)
 Frame = +2

Query: 71  SNPKLKNVQQQVDQLTDSMRKNMDKVLERDKNLDDLNVRAQDMEGNAREFHASAVKARRK 250
           SN +L+  Q QV+++ D +R N+DKVLERD+ L +L+ RA  ++  A +F +SA K +RK
Sbjct: 30  SNRRLQQTQAQVEEVVDIIRVNVDKVLERDQKLSELDDRADALQAGASQFESSAAKLKRK 89

Query: 251 FWWQNMKM 274
           +WW+N KM
Sbjct: 90  YWWKNCKM 97

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,848,980
Number of Sequences: 369166
Number of extensions: 1013584
Number of successful extensions: 2778
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2696
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2777
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4259329035
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

1. Dr_sW_004_H13
2. Dr_sW_018_M11
3. Dr_sW_004_H01
4. Dr_sW_023_D21
5. Dr_sW_010_L09
6. Dr_sW_019_N15
7. Dr_sW_016_N15
8. Dr_sW_027_G04
9. Dr_sW_023_G05