Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_023_D21
(401 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q15836|VAM3_HUMAN Vesicle-associated membrane protein 3 ... 43 2e-04
sp|P63025|VAMP3_RAT Vesicle-associated membrane protein 3 (... 43 2e-04
sp|P47193|VAMP2_XENLA Vesicle-associated membrane protein 2... 41 8e-04
sp|P47194|SYB_LOLPE Synaptobrevin 40 0.001
sp|Q27236|SYBL_SCHMA Synaptobrevin-like protein 40 0.001
sp|P63026|VAMP2_BOVIN Vesicle-associated membrane protein 2... 40 0.002
sp|P63045|VAMP2_RAT Vesicle-associated membrane protein 2 (... 40 0.002
sp|P35589|SYB_APLCA Synaptobrevin 40 0.002
sp|P23763|VAM1_HUMAN Vesicle-associated membrane protein 1 ... 39 0.003
sp|P13701|SYB_TORCA Synaptobrevin (Synaptic vesicle-associa... 39 0.003
>sp|Q15836|VAM3_HUMAN Vesicle-associated membrane protein 3 (VAMP-3) (Synaptobrevin 3)
(Cellubrevin) (CEB)
Length = 100
Score = 43.1 bits (100), Expect = 2e-04
Identities = 16/34 (47%), Positives = 23/34 (67%)
Frame = +1
Query: 1 LNVRAQDMEGNAREFHASAVKARRKFWWQNMKMW 102
L+ RA ++ A +F SA K +RK+WW+N KMW
Sbjct: 46 LDDRADALQAGASQFETSAAKLKRKYWWKNCKMW 79
>sp|P63025|VAMP3_RAT Vesicle-associated membrane protein 3 (VAMP-3) (Synaptobrevin-3)
(Cellubrevin) (CEB)
sp|P63024|VAMP3_MOUSE Vesicle-associated membrane protein 3 (VAMP-3) (Synaptobrevin-3)
(Cellubrevin) (CEB)
Length = 103
Score = 43.1 bits (100), Expect = 2e-04
Identities = 16/34 (47%), Positives = 23/34 (67%)
Frame = +1
Query: 1 LNVRAQDMEGNAREFHASAVKARRKFWWQNMKMW 102
L+ RA ++ A +F SA K +RK+WW+N KMW
Sbjct: 50 LDDRADALQAGASQFETSAAKLKRKYWWKNCKMW 83
>sp|P47193|VAMP2_XENLA Vesicle-associated membrane protein 2 (VAMP-2) (Synaptobrevin-2)
(SYBII)
Length = 114
Score = 41.2 bits (95), Expect = 8e-04
Identities = 16/33 (48%), Positives = 23/33 (69%)
Frame = +1
Query: 1 LNVRAQDMEGNAREFHASAVKARRKFWWQNMKM 99
L+ RA ++ A +F SA K +RK+WW+NMKM
Sbjct: 61 LDDRADALQAGASQFETSAAKLKRKYWWKNMKM 93
>sp|P47194|SYB_LOLPE Synaptobrevin
Length = 125
Score = 40.4 bits (93), Expect = 0.001
Identities = 17/33 (51%), Positives = 23/33 (69%)
Frame = +1
Query: 1 LNVRAQDMEGNAREFHASAVKARRKFWWQNMKM 99
L+ RA ++ A +F ASA K +RKFWW+N KM
Sbjct: 72 LDDRADALQAGASQFEASAGKLKRKFWWKNCKM 104
>sp|Q27236|SYBL_SCHMA Synaptobrevin-like protein
Length = 131
Score = 40.4 bits (93), Expect = 0.001
Identities = 17/33 (51%), Positives = 23/33 (69%)
Frame = +1
Query: 1 LNVRAQDMEGNAREFHASAVKARRKFWWQNMKM 99
L+ RA ++ A +F ASA K +RKFWW+N KM
Sbjct: 50 LDGRADALQAGASQFEASAGKLKRKFWWKNCKM 82
>sp|P63026|VAMP2_BOVIN Vesicle-associated membrane protein 2 (VAMP-2) (Synaptobrevin-2)
sp|P63027|VAM2_HUMAN Vesicle-associated membrane protein 2 (VAMP-2) (Synaptobrevin 2)
Length = 116
Score = 40.0 bits (92), Expect = 0.002
Identities = 15/33 (45%), Positives = 23/33 (69%)
Frame = +1
Query: 1 LNVRAQDMEGNAREFHASAVKARRKFWWQNMKM 99
L+ RA ++ A +F SA K +RK+WW+N+KM
Sbjct: 63 LDDRADALQAGASQFETSAAKLKRKYWWKNLKM 95
>sp|P63045|VAMP2_RAT Vesicle-associated membrane protein 2 (VAMP-2) (Synaptobrevin-2)
sp|P63044|VAMP2_MOUSE Vesicle-associated membrane protein 2 (VAMP-2) (Synaptobrevin-2)
Length = 116
Score = 40.0 bits (92), Expect = 0.002
Identities = 15/33 (45%), Positives = 23/33 (69%)
Frame = +1
Query: 1 LNVRAQDMEGNAREFHASAVKARRKFWWQNMKM 99
L+ RA ++ A +F SA K +RK+WW+N+KM
Sbjct: 63 LDDRADALQAGASQFETSAAKLKRKYWWKNLKM 95
>sp|P35589|SYB_APLCA Synaptobrevin
Length = 180
Score = 40.0 bits (92), Expect = 0.002
Identities = 16/33 (48%), Positives = 24/33 (72%)
Frame = +1
Query: 1 LNVRAQDMEGNAREFHASAVKARRKFWWQNMKM 99
L+ RA+ ++ A +F ASA K +RK+WW+N KM
Sbjct: 53 LDDRAEALQAGASQFEASAGKLKRKYWWKNCKM 85
>sp|P23763|VAM1_HUMAN Vesicle-associated membrane protein 1 (VAMP-1) (Synaptobrevin 1)
Length = 118
Score = 39.3 bits (90), Expect = 0.003
Identities = 15/33 (45%), Positives = 23/33 (69%)
Frame = +1
Query: 1 LNVRAQDMEGNAREFHASAVKARRKFWWQNMKM 99
L+ RA ++ A +F +SA K +RK+WW+N KM
Sbjct: 65 LDDRADALQAGASQFESSAAKLKRKYWWKNCKM 97
>sp|P13701|SYB_TORCA Synaptobrevin (Synaptic vesicle-associated integral membrane
protein) (VAMP-1)
Length = 120
Score = 39.3 bits (90), Expect = 0.003
Identities = 15/33 (45%), Positives = 23/33 (69%)
Frame = +1
Query: 1 LNVRAQDMEGNAREFHASAVKARRKFWWQNMKM 99
L+ RA ++ A +F +SA K +RK+WW+N KM
Sbjct: 67 LDDRADALQAGASQFESSAAKLKRKYWWKNCKM 99
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,884,474
Number of Sequences: 369166
Number of extensions: 657436
Number of successful extensions: 1229
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1229
length of database: 68,354,980
effective HSP length: 98
effective length of database: 50,250,950
effective search space used: 1758783250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)