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Planaria EST Database

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00715
         (924 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P16219|ACADS_HUMAN  Acyl-CoA dehydrogenase, short-chain s...   394   e-109
sp|P15651|ACADS_RAT  Acyl-CoA dehydrogenase, short-chain spe...   394   e-109
sp|Q07417|ACADS_MOUSE  Acyl-CoA dehydrogenase, short-chain s...   387   e-107
sp|P79273|ACADS_PIG  Acyl-CoA dehydrogenase, short-chain spe...   385   e-107
sp|P45867|ACDA_BACSU  Acyl-CoA dehydrogenase                      260   3e-69
sp|P52042|ACDS_CLOAB  Acyl-CoA dehydrogenase, short-chain sp...   233   7e-61
sp|Q06319|ACDS_MEGEL  Acyl-CoA dehydrogenase, short-chain sp...   229   6e-60
sp|P45857|ACDB_BACSU  Acyl-CoA dehydrogenase                      229   1e-59
sp|P12007|IVD_RAT  Isovaleryl-CoA dehydrogenase, mitochondri...   223   6e-58
sp|Q9JHI5|IVD_MOUSE  Isovaleryl-CoA dehydrogenase, mitochond...   220   5e-57

>sp|P16219|ACADS_HUMAN Acyl-CoA dehydrogenase, short-chain specific, mitochondrial
           precursor (SCAD) (Butyryl-CoA dehydrogenase)
          Length = 412

 Score =  394 bits (1012), Expect = e-109
 Identities = 194/308 (62%), Positives = 235/308 (76%)
 Frame = +1

Query: 1   KRLGHLGLLSLIVPESKGGSGLDYLAYTIAMEEISRGCASVGVVMTAHNSLYLAPLLKYG 180
           K++G LGLL++ VPE  GG+GLDYLAY IAMEEISRGCAS GV+M+ +NSLYL P+LK+G
Sbjct: 72  KKMGGLGLLAMDVPEELGGAGLDYLAYAIAMEEISRGCASTGVIMSVNNSLYLGPILKFG 131

Query: 181 NVEQWKQFGTPFLTSGKIGCFALSEPANGSDAGAASTTARKDGDNWILNGTKSWITNGYE 360
           + EQ + + TPF +  KIGCFALSEP NGSDAGAASTTAR +GD+W+LNGTK+WITN +E
Sbjct: 132 SKEQKQAWVTPFTSGDKIGCFALSEPGNGSDAGAASTTARAEGDSWVLNGTKAWITNAWE 191

Query: 361 SEAAIVFATTDKSLKHKGISAFIVPKPTPGLSLGKKEDKLGIRASSTCQLIFEDCKIPSS 540
           + AA+VFA+TD++L++KGISAF+VP PTPGL+LGKKEDKLGIR SST  LIFEDC+IP  
Sbjct: 192 ASAAVVFASTDRALQNKGISAFLVPMPTPGLTLGKKEDKLGIRGSSTANLIFEDCRIPKD 251

Query: 541 NILGQPGFGFKIAMKTLDGGRXXXXXXXXXXXXXXXECAVDYSTKRQSFSQPIAKFQAIQ 720
           +ILG+PG GFKIAM+TLD GR               +CAV+Y+  R +F  P+ K Q IQ
Sbjct: 252 SILGEPGMGFKIAMQTLDMGRIGIASQALGIAQTALDCAVNYAENRMAFGAPLTKLQVIQ 311

Query: 721 IKLADMASRLEGARLLTWKAARKYDKGEPFTKDXXXXXXXXXXXXTFISHQAIQILGGMG 900
            KLADMA  LE ARLLTW+AA   D  +PF K+            T ISHQAIQILGGMG
Sbjct: 312 FKLADMALALESARLLTWRAAMLKDNKKPFIKEAAMAKLAASEAATAISHQAIQILGGMG 371

Query: 901 YVTDMPAE 924
           YVT+MPAE
Sbjct: 372 YVTEMPAE 379

>sp|P15651|ACADS_RAT Acyl-CoA dehydrogenase, short-chain specific, mitochondrial
           precursor (SCAD) (Butyryl-CoA dehydrogenase)
          Length = 412

 Score =  394 bits (1011), Expect = e-109
 Identities = 193/308 (62%), Positives = 235/308 (76%)
 Frame = +1

Query: 1   KRLGHLGLLSLIVPESKGGSGLDYLAYTIAMEEISRGCASVGVVMTAHNSLYLAPLLKYG 180
           K++G LGLL++ VPE   G+GLDYLAY+IA+EEISRGCAS GV+M+ +NSLYL P+LK+G
Sbjct: 72  KKMGELGLLAMDVPEELSGAGLDYLAYSIALEEISRGCASTGVIMSVNNSLYLGPILKFG 131

Query: 181 NVEQWKQFGTPFLTSGKIGCFALSEPANGSDAGAASTTARKDGDNWILNGTKSWITNGYE 360
           + +Q +Q+ TPF    KIGCFALSEP NGSDAGAASTTAR++GD+W+LNGTK+WITN +E
Sbjct: 132 SSQQKQQWITPFTNGDKIGCFALSEPGNGSDAGAASTTAREEGDSWVLNGTKAWITNSWE 191

Query: 361 SEAAIVFATTDKSLKHKGISAFIVPKPTPGLSLGKKEDKLGIRASSTCQLIFEDCKIPSS 540
           + A +VFA+TD+S ++KGISAF+VP PTPGL+LGKKEDKLGIRASST  LIFEDC+IP  
Sbjct: 192 ASATVVFASTDRSRQNKGISAFLVPMPTPGLTLGKKEDKLGIRASSTANLIFEDCRIPKE 251

Query: 541 NILGQPGFGFKIAMKTLDGGRXXXXXXXXXXXXXXXECAVDYSTKRQSFSQPIAKFQAIQ 720
           N+LG+PG GFKIAM+TLD GR               +CAV Y+  R +F  P+ K Q IQ
Sbjct: 252 NLLGEPGMGFKIAMQTLDMGRIGIASQALGIAQASLDCAVKYAENRHAFGAPLTKLQNIQ 311

Query: 721 IKLADMASRLEGARLLTWKAARKYDKGEPFTKDXXXXXXXXXXXXTFISHQAIQILGGMG 900
            KLADMA  LE ARLLTW+AA   D  +PFTK+            T ISHQAIQILGGMG
Sbjct: 312 FKLADMALALESARLLTWRAAMLKDNKKPFTKESAMAKLAASEAATAISHQAIQILGGMG 371

Query: 901 YVTDMPAE 924
           YVT+MPAE
Sbjct: 372 YVTEMPAE 379

>sp|Q07417|ACADS_MOUSE Acyl-CoA dehydrogenase, short-chain specific, mitochondrial
           precursor (SCAD) (Butyryl-CoA dehydrogenase)
          Length = 412

 Score =  387 bits (994), Expect = e-107
 Identities = 190/308 (61%), Positives = 232/308 (75%)
 Frame = +1

Query: 1   KRLGHLGLLSLIVPESKGGSGLDYLAYTIAMEEISRGCASVGVVMTAHNSLYLAPLLKYG 180
           K++G LGLL++ VPE   G+GL YLAY+IA+EEISR CAS GV+M+ +NSLYL P+LK+G
Sbjct: 72  KKMGELGLLAMDVPEELSGAGLGYLAYSIALEEISRACASTGVIMSVNNSLYLGPILKFG 131

Query: 181 NVEQWKQFGTPFLTSGKIGCFALSEPANGSDAGAASTTARKDGDNWILNGTKSWITNGYE 360
           + +Q +Q+ TPF    KIGCFALSEP NGSDAGAASTTAR++GD+W+LNGTK+WITN +E
Sbjct: 132 SAQQKQQWITPFTNGDKIGCFALSEPGNGSDAGAASTTAREEGDSWVLNGTKAWITNSWE 191

Query: 361 SEAAIVFATTDKSLKHKGISAFIVPKPTPGLSLGKKEDKLGIRASSTCQLIFEDCKIPSS 540
           + A +VFA+TD+S ++KGISAF+VP PTPGL+LGKKEDKLGIRASST  LIFEDC+IP  
Sbjct: 192 ASATVVFASTDRSRQNKGISAFLVPMPTPGLTLGKKEDKLGIRASSTANLIFEDCRIPKE 251

Query: 541 NILGQPGFGFKIAMKTLDGGRXXXXXXXXXXXXXXXECAVDYSTKRQSFSQPIAKFQAIQ 720
           N+LG+PG GFKIAM+TLD GR               +CAV Y+  R +F  P+ K Q IQ
Sbjct: 252 NLLGEPGMGFKIAMQTLDMGRIGIASQALGIAQASLDCAVKYAENRNAFGAPLTKLQNIQ 311

Query: 721 IKLADMASRLEGARLLTWKAARKYDKGEPFTKDXXXXXXXXXXXXTFISHQAIQILGGMG 900
            KLADMA  LE ARLLTW+AA   D  +PFTK+            T ISHQAIQILG MG
Sbjct: 312 FKLADMALALESARLLTWRAAMLKDNKKPFTKESAMRKLAASEAATAISHQAIQILGSMG 371

Query: 901 YVTDMPAE 924
           YVT+MPAE
Sbjct: 372 YVTEMPAE 379

>sp|P79273|ACADS_PIG Acyl-CoA dehydrogenase, short-chain specific, mitochondrial
           precursor (SCAD) (Butyryl-CoA dehydrogenase)
          Length = 413

 Score =  385 bits (989), Expect = e-107
 Identities = 191/309 (61%), Positives = 236/309 (76%), Gaps = 1/309 (0%)
 Frame = +1

Query: 1   KRLGHLGLLSLIVPESKGGSGLDYLAYTIAMEEISRGCASVGVVMTAHNSLYLAPLLKYG 180
           K++G LGL+++ VPE   G+GLDYLAYTIAMEEISRGCAS GV+M+ +N LYL P+LK+G
Sbjct: 72  KKMGELGLMAMDVPEELSGAGLDYLAYTIAMEEISRGCASTGVIMSVNNFLYLGPILKFG 131

Query: 181 NVEQWKQFGTPFLTSGKIGCFALSEPANGSDAGAASTTARKDGDNWILNGTKSWITNGYE 360
           + EQ +Q+ TPF +  K+GCFALSEP NGSDAGAA+TTA+ D D+W+L+GTK+WITN +E
Sbjct: 132 SKEQKQQWITPFTSGDKVGCFALSEPGNGSDAGAAATTAQADHDSWVLSGTKAWITNAWE 191

Query: 361 SEAAIVFATTDKSLKHKGISAFIVPKPTPGLSLGKKEDKLGIRASSTCQLIFEDCKIPSS 540
           + AA+VFA+TD+SL++KGISAF+VP PT GL+LGKKEDKLGIRASST  LIFEDC+IP  
Sbjct: 192 ASAAVVFASTDRSLQNKGISAFLVPMPTAGLTLGKKEDKLGIRASSTANLIFEDCRIPKE 251

Query: 541 NILGQPGFGFKIAMKTLDGGRXXXXXXXXXXXXXXXECAVDYSTKRQSFSQPIAKFQAIQ 720
           N+LG+PG GFKIAMKTLD GR               +CAV+Y+  R++F  P+ K Q IQ
Sbjct: 252 NLLGEPGMGFKIAMKTLDMGRIGIASKALGISQAALDCAVNYAENRRAFGVPLTKLQGIQ 311

Query: 721 IKLADMASRLEGARLLTWKAAR-KYDKGEPFTKDXXXXXXXXXXXXTFISHQAIQILGGM 897
            KLADMA  LE ARLLTW+AA  K +K  PF K+            T I+HQAIQILGGM
Sbjct: 312 FKLADMALALESARLLTWRAAMLKDNKKNPFIKEPAMAKLAASEAATAITHQAIQILGGM 371

Query: 898 GYVTDMPAE 924
           GYVT+MPAE
Sbjct: 372 GYVTEMPAE 380

>sp|P45867|ACDA_BACSU Acyl-CoA dehydrogenase
          Length = 379

 Score =  260 bits (665), Expect = 3e-69
 Identities = 140/308 (45%), Positives = 189/308 (61%)
 Frame = +1

Query: 1   KRLGHLGLLSLIVPESKGGSGLDYLAYTIAMEEISRGCASVGVVMTAHNSLYLAPLLKYG 180
           + + +LGL  +  PE  GG G DYLAY IA+EE+S+ CAS GV ++AH SL   PL  +G
Sbjct: 43  REMANLGLTGIPWPEDYGGIGSDYLAYVIAVEELSKVCASTGVTLSAHISLCSWPLFAFG 102

Query: 181 NVEQWKQFGTPFLTSGKIGCFALSEPANGSDAGAASTTARKDGDNWILNGTKSWITNGYE 360
             EQ  ++ T      KIG FAL+E  +GSDAG+  TTA + GD+++LNG+K +ITNG  
Sbjct: 103 TEEQKTEYLTQLALGEKIGAFALTEAGSGSDAGSMKTTAERIGDDYVLNGSKVFITNGGV 162

Query: 361 SEAAIVFATTDKSLKHKGISAFIVPKPTPGLSLGKKEDKLGIRASSTCQLIFEDCKIPSS 540
           ++  IVFA TD   K KG++AFIV K   G   GKKE KLGIR+S T +++FEDC +P+S
Sbjct: 163 ADIYIVFAVTDPEKKKKGVTAFIVEKDFEGFFTGKKEKKLGIRSSPTTEIMFEDCVVPAS 222

Query: 541 NILGQPGFGFKIAMKTLDGGRXXXXXXXXXXXXXXXECAVDYSTKRQSFSQPIAKFQAIQ 720
             LG+ G GFKIAMKTLDGGR               + A+ Y+ +R+ F + IA+ Q I 
Sbjct: 223 KRLGEEGEGFKIAMKTLDGGRNGIAAQAVGIAQGALDAALQYAKERKQFGKSIAEQQGIA 282

Query: 721 IKLADMASRLEGARLLTWKAARKYDKGEPFTKDXXXXXXXXXXXXTFISHQAIQILGGMG 900
            KLADMA+ +E +RLLT++AA     G P+ K               ++ +A+QI GG G
Sbjct: 283 FKLADMATMIEASRLLTYQAAWLESSGLPYGKASAMSKLMAGDTAMKVTTEAVQIFGGYG 342

Query: 901 YVTDMPAE 924
           Y  D P E
Sbjct: 343 YTKDYPVE 350

>sp|P52042|ACDS_CLOAB Acyl-CoA dehydrogenase, short-chain specific (SCAD) (Butyryl-CoA
           dehydrogenase)
          Length = 379

 Score =  233 bits (593), Expect = 7e-61
 Identities = 122/308 (39%), Positives = 183/308 (59%)
 Frame = +1

Query: 1   KRLGHLGLLSLIVPESKGGSGLDYLAYTIAMEEISRGCASVGVVMTAHNSLYLAPLLKYG 180
           K++G  G++ +   +  GG+G D L+Y IA+EE+S+ C + GV+++AH SL  + + ++G
Sbjct: 43  KKMGQYGMMGIPFSKEYGGAGGDVLSYIIAVEELSKVCGTTGVILSAHTSLCASLINEHG 102

Query: 181 NVEQWKQFGTPFLTSGKIGCFALSEPANGSDAGAASTTARKDGDNWILNGTKSWITNGYE 360
             EQ +++  P     KIG + L+EP  G+D+GA  T A  +GD++++NG+K +ITNG  
Sbjct: 103 TEEQKQKYLVPLAKGEKIGAYGLTEPNAGTDSGAQQTVAVLEGDHYVINGSKIFITNGGV 162

Query: 361 SEAAIVFATTDKSLKHKGISAFIVPKPTPGLSLGKKEDKLGIRASSTCQLIFEDCKIPSS 540
           ++  ++FA TD++   KGISAFI+ K   G S+GK E KLGIRASST +L+FED  +P  
Sbjct: 163 ADTFVIFAMTDRTKGTKGISAFIIEKGFKGFSIGKVEQKLGIRASSTTELVFEDMIVPVE 222

Query: 541 NILGQPGFGFKIAMKTLDGGRXXXXXXXXXXXXXXXECAVDYSTKRQSFSQPIAKFQAIQ 720
           N++G+ G GF IAMKTLDGGR                 A  Y  +R+ F + + KFQ + 
Sbjct: 223 NMIGKEGKGFPIAMKTLDGGRIGIAAQALGIAEGAFNEARAYMKERKQFGRSLDKFQGLA 282

Query: 721 IKLADMASRLEGARLLTWKAARKYDKGEPFTKDXXXXXXXXXXXXTFISHQAIQILGGMG 900
             +ADM   +E AR L +KAA     G P+T D              ++ +A+Q+ GG G
Sbjct: 283 WMMADMDVAIESARYLVYKAAYLKQAGLPYTVDAARAKLHAANVAMDVTTKAVQLFGGYG 342

Query: 901 YVTDMPAE 924
           Y  D P E
Sbjct: 343 YTKDYPVE 350

>sp|Q06319|ACDS_MEGEL Acyl-CoA dehydrogenase, short-chain specific (SCAD) (Butyryl-CoA
           dehydrogenase) (BCAD)
          Length = 383

 Score =  229 bits (585), Expect = 6e-60
 Identities = 128/305 (41%), Positives = 180/305 (59%), Gaps = 4/305 (1%)
 Frame = +1

Query: 16  LGLLSLIVPESKGGSGLD---YLAYTIAMEEISRGCASVGVVMTAHNSLYLAPLLKYGNV 186
           LG+      E  GGSG D    L+Y +A+EE+++  A V + ++A  SL   P+ ++G  
Sbjct: 48  LGITGAYFEEKYGGSGDDGGDVLSYILAVEELAKYDAGVAITLSATVSLCANPIWQFGTE 107

Query: 187 EQWKQFGTPFLTSGKIGCFALSEPANGSDAGAASTTARKDGDN-WILNGTKSWITNGYES 363
            Q ++F  P +   K+G F L+EP  G+DA    T A K+ D  + LNG+K +ITNG  +
Sbjct: 108 AQKEKFLVPLVEGTKLGAFGLTEPNAGTDASGQQTIATKNDDGTYTLNGSKIFITNGGAA 167

Query: 364 EAAIVFATTDKSLKHKGISAFIVPKPTPGLSLGKKEDKLGIRASSTCQLIFEDCKIPSSN 543
           +  IVFA TDKS  + GI+AFI+   TPG + GKKEDK+GI  S T +L+F+D K+P+ N
Sbjct: 168 DIYIVFAMTDKSKGNHGITAFILEDGTPGFTYGKKEDKMGIHTSQTMELVFQDVKVPAEN 227

Query: 544 ILGQPGFGFKIAMKTLDGGRXXXXXXXXXXXXXXXECAVDYSTKRQSFSQPIAKFQAIQI 723
           +LG+ G GFKIAM TLDGGR                 AV+YS +R  F +P+ KFQ+I  
Sbjct: 228 MLGEEGKGFKIAMMTLDGGRIGVAAQALGIAEAALADAVEYSKQRVQFGKPLCKFQSISF 287

Query: 724 KLADMASRLEGARLLTWKAARKYDKGEPFTKDXXXXXXXXXXXXTFISHQAIQILGGMGY 903
           KLADM  ++E AR L +KAA K  +G+PFT D              ++ +A+QI GG GY
Sbjct: 288 KLADMKMQIEAARNLVYKAACKKQEGKPFTVDAAIAKRVASDVAMRVTTEAVQIFGGYGY 347

Query: 904 VTDMP 918
             + P
Sbjct: 348 SEEYP 352

>sp|P45857|ACDB_BACSU Acyl-CoA dehydrogenase
          Length = 378

 Score =  229 bits (583), Expect = 1e-59
 Identities = 133/309 (43%), Positives = 186/309 (60%), Gaps = 1/309 (0%)
 Frame = +1

Query: 1   KRLGHLGLLSLIVPESKGGSGLDYLAYTIAMEEISRGCASVGVVMTAHNSLYLAPLLKYG 180
           K++G  GL+ + VPE  GG+G D ++Y +A+ EISR  A+VGV+++ H S+   P+L +G
Sbjct: 41  KKMGKHGLMGIPVPEQYGGAGADVVSYILAIHEISRISAAVGVILSVHTSVGTNPILYFG 100

Query: 181 NVEQWKQFGTPFLTSGK-IGCFALSEPANGSDAGAASTTARKDGDNWILNGTKSWITNGY 357
           N EQ  ++  P L SG  +G FAL+EP +GSDAG+  TTA K    ++LNG+K +ITNG 
Sbjct: 101 NEEQKMKY-IPNLASGDHLGAFALTEPHSGSDAGSLRTTAIKKNGKYLLNGSKIFITNGG 159

Query: 358 ESEAAIVFATTDKSLKHKGISAFIVPKPTPGLSLGKKEDKLGIRASSTCQLIFEDCKIPS 537
            ++  I FA T       GISAFIV K TPG ++GKKE KLG+  S+T +LIF++ ++P 
Sbjct: 160 AADIYITFALTAPDQGRHGISAFIVEKNTPGFTVGKKERKLGLYGSNTTELIFDNAEVPE 219

Query: 538 SNILGQPGFGFKIAMKTLDGGRXXXXXXXXXXXXXXXECAVDYSTKRQSFSQPIAKFQAI 717
           +N+LG+ G GF IAM  L+ GR               E AVDY+ +R  F +PIA  Q I
Sbjct: 220 ANLLGKEGDGFHIAMANLNVGRIGIAAQALGIAEAALEHAVDYAKQRVQFGRPIAANQGI 279

Query: 718 QIKLADMASRLEGARLLTWKAARKYDKGEPFTKDXXXXXXXXXXXXTFISHQAIQILGGM 897
             KLADMA+R E AR L + AA  +++G    K+               +  A+QI GG 
Sbjct: 280 SFKLADMATRAEAARHLVYHAADLHNRGLNCGKE-ASMAKQFASDAAVKALDAVQIYGGY 338

Query: 898 GYVTDMPAE 924
           GY+ D P E
Sbjct: 339 GYMKDYPVE 347

>sp|P12007|IVD_RAT Isovaleryl-CoA dehydrogenase, mitochondrial precursor (IVD)
          Length = 424

 Score =  223 bits (568), Expect = 6e-58
 Identities = 126/309 (40%), Positives = 177/309 (57%), Gaps = 3/309 (0%)
 Frame = +1

Query: 1    KRLGHLGLLSLIVPESKGGSGLDYLAYTIAMEEISRGCASVGVVMTAHNSLYLAPLLKYG 180
            K+LG LG+L +  P   GGSGL YL + + MEEISR  A+VG+   AH++L +  +++ G
Sbjct: 83   KQLGSLGVLGITAPVQYGGSGLGYLEHVLVMEEISRASAAVGLSYGAHSNLCINQIVRNG 142

Query: 181  NVEQWKQFGTPFLTSGK-IGCFALSEPANGSDAGAASTTARKDGDNWILNGTKSWITNGY 357
            N  Q +++  P L SG+ IG  A+SEP  GSD  +    A K GD+++LNG K WITNG 
Sbjct: 143  NEAQKEKY-LPKLISGEFIGALAMSEPNAGSDVVSMRLKAEKKGDHYVLNGNKFWITNGP 201

Query: 358  ESEAAIVFATTDKSL--KHKGISAFIVPKPTPGLSLGKKEDKLGIRASSTCQLIFEDCKI 531
            +++  +V+A TD +     +GI+AFIV K  PG S  KK DKLG+R S+TC+L+FEDCK+
Sbjct: 202  DADVLVVYAKTDLTAVPASRGITAFIVEKDMPGFSTSKKLDKLGMRGSNTCELVFEDCKV 261

Query: 532  PSSNILGQPGFGFKIAMKTLDGGRXXXXXXXXXXXXXXXECAVDYSTKRQSFSQPIAKFQ 711
            P++NIL Q   G  + M  LD  R               +  + Y   R++F Q I +FQ
Sbjct: 262  PAANILSQESKGVYVLMSGLDLERLVLAGGPLGIMQAVLDHTIPYLHVREAFGQKIGQFQ 321

Query: 712  AIQIKLADMASRLEGARLLTWKAARKYDKGEPFTKDXXXXXXXXXXXXTFISHQAIQILG 891
             +Q K+ADM +RL   R   +  AR  D+G    KD            T ++   IQ LG
Sbjct: 322  LMQGKMADMYTRLMACRQYVYNVARACDEGHITAKDCAGVILYTAECATQVALDGIQCLG 381

Query: 892  GMGYVTDMP 918
            G GY+ D P
Sbjct: 382  GNGYINDFP 390

>sp|Q9JHI5|IVD_MOUSE Isovaleryl-CoA dehydrogenase, mitochondrial precursor (IVD)
          Length = 424

 Score =  220 bits (560), Expect = 5e-57
 Identities = 123/309 (39%), Positives = 177/309 (57%), Gaps = 3/309 (0%)
 Frame = +1

Query: 1    KRLGHLGLLSLIVPESKGGSGLDYLAYTIAMEEISRGCASVGVVMTAHNSLYLAPLLKYG 180
            K+LG LG+L +  P   GGSGL YL + + MEEISR   +VG+   AH++L +  +++ G
Sbjct: 83   KQLGSLGVLGITAPVQYGGSGLGYLEHVLVMEEISRASGAVGLSYGAHSNLCVNQIVRNG 142

Query: 181  NVEQWKQFGTPFLTSGK-IGCFALSEPANGSDAGAASTTARKDGDNWILNGTKSWITNGY 357
            N  Q +++  P L SG+ IG  A+SEP  GSD  +    A K GD+++LNG K WITNG 
Sbjct: 143  NEAQKEKY-LPKLISGEFIGALAMSEPNAGSDVVSMKLKAEKKGDHYVLNGNKFWITNGP 201

Query: 358  ESEAAIVFATTDKSL--KHKGISAFIVPKPTPGLSLGKKEDKLGIRASSTCQLIFEDCKI 531
            +++  +V+A TD +     +GI+AFIV K  PG S  KK DKLG+R S+TC+L+FEDCK+
Sbjct: 202  DADILVVYAKTDLTAVPASRGITAFIVEKGMPGFSTSKKLDKLGMRGSNTCELVFEDCKV 261

Query: 532  PSSNILGQPGFGFKIAMKTLDGGRXXXXXXXXXXXXXXXECAVDYSTKRQSFSQPIAKFQ 711
            P++N+L Q   G  + M  LD  R               +  + Y   R++F Q I +FQ
Sbjct: 262  PAANVLSQESKGVYVLMSGLDLERLVLAGGPLGIMQAVLDHTIPYLHVREAFGQKIGQFQ 321

Query: 712  AIQIKLADMASRLEGARLLTWKAARKYDKGEPFTKDXXXXXXXXXXXXTFISHQAIQILG 891
             +Q K+ADM +RL  +R   +  A+  D+G    KD            T ++   IQ LG
Sbjct: 322  LMQGKMADMYTRLMASRQYVYNVAKACDEGHIIPKDCAGVILYAAECATQVALDGIQCLG 381

Query: 892  GMGYVTDMP 918
            G GY+ D P
Sbjct: 382  GNGYINDFP 390

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.317    0.134    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 106,358,481
Number of Sequences: 369166
Number of extensions: 2088490
Number of successful extensions: 5009
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4720
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4861
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9462723610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)

Cluster detail

1. Dr_sW_015_F13
2. Dr_sW_018_L13