Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_018_L13
(924 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P16219|ACADS_HUMAN Acyl-CoA dehydrogenase, short-chain s... 394 e-109
sp|P15651|ACADS_RAT Acyl-CoA dehydrogenase, short-chain spe... 394 e-109
sp|Q07417|ACADS_MOUSE Acyl-CoA dehydrogenase, short-chain s... 387 e-107
sp|P79273|ACADS_PIG Acyl-CoA dehydrogenase, short-chain spe... 385 e-107
sp|P45867|ACDA_BACSU Acyl-CoA dehydrogenase 260 3e-69
sp|P52042|ACDS_CLOAB Acyl-CoA dehydrogenase, short-chain sp... 233 7e-61
sp|Q06319|ACDS_MEGEL Acyl-CoA dehydrogenase, short-chain sp... 229 6e-60
sp|P45857|ACDB_BACSU Acyl-CoA dehydrogenase 229 1e-59
sp|P12007|IVD_RAT Isovaleryl-CoA dehydrogenase, mitochondri... 223 6e-58
sp|Q9JHI5|IVD_MOUSE Isovaleryl-CoA dehydrogenase, mitochond... 220 5e-57
>sp|P16219|ACADS_HUMAN Acyl-CoA dehydrogenase, short-chain specific, mitochondrial
precursor (SCAD) (Butyryl-CoA dehydrogenase)
Length = 412
Score = 394 bits (1012), Expect = e-109
Identities = 194/308 (62%), Positives = 235/308 (76%)
Frame = +1
Query: 1 KRLGHLGLLSLIVPESKGGSGLDYLAYTIAMEEISRGCASVGVVMTAHNSLYLAPLLKYG 180
K++G LGLL++ VPE GG+GLDYLAY IAMEEISRGCAS GV+M+ +NSLYL P+LK+G
Sbjct: 72 KKMGGLGLLAMDVPEELGGAGLDYLAYAIAMEEISRGCASTGVIMSVNNSLYLGPILKFG 131
Query: 181 NVEQWKQFGTPFLTSGKIGCFALSEPANGSDAGAASTTARKDGDNWILNGTKSWITNGYE 360
+ EQ + + TPF + KIGCFALSEP NGSDAGAASTTAR +GD+W+LNGTK+WITN +E
Sbjct: 132 SKEQKQAWVTPFTSGDKIGCFALSEPGNGSDAGAASTTARAEGDSWVLNGTKAWITNAWE 191
Query: 361 SEAAIVFATTDKSLKHKGISAFIVPKPTPGLSLGKKEDKLGIRASSTCQLIFEDCKIPSS 540
+ AA+VFA+TD++L++KGISAF+VP PTPGL+LGKKEDKLGIR SST LIFEDC+IP
Sbjct: 192 ASAAVVFASTDRALQNKGISAFLVPMPTPGLTLGKKEDKLGIRGSSTANLIFEDCRIPKD 251
Query: 541 NILGQPGFGFKIAMKTLDGGRXXXXXXXXXXXXXXXECAVDYSTKRQSFSQPIAKFQAIQ 720
+ILG+PG GFKIAM+TLD GR +CAV+Y+ R +F P+ K Q IQ
Sbjct: 252 SILGEPGMGFKIAMQTLDMGRIGIASQALGIAQTALDCAVNYAENRMAFGAPLTKLQVIQ 311
Query: 721 IKLADMASRLEGARLLTWKAARKYDKGEPFTKDXXXXXXXXXXXXTFISHQAIQILGGMG 900
KLADMA LE ARLLTW+AA D +PF K+ T ISHQAIQILGGMG
Sbjct: 312 FKLADMALALESARLLTWRAAMLKDNKKPFIKEAAMAKLAASEAATAISHQAIQILGGMG 371
Query: 901 YVTDMPAE 924
YVT+MPAE
Sbjct: 372 YVTEMPAE 379
>sp|P15651|ACADS_RAT Acyl-CoA dehydrogenase, short-chain specific, mitochondrial
precursor (SCAD) (Butyryl-CoA dehydrogenase)
Length = 412
Score = 394 bits (1011), Expect = e-109
Identities = 193/308 (62%), Positives = 235/308 (76%)
Frame = +1
Query: 1 KRLGHLGLLSLIVPESKGGSGLDYLAYTIAMEEISRGCASVGVVMTAHNSLYLAPLLKYG 180
K++G LGLL++ VPE G+GLDYLAY+IA+EEISRGCAS GV+M+ +NSLYL P+LK+G
Sbjct: 72 KKMGELGLLAMDVPEELSGAGLDYLAYSIALEEISRGCASTGVIMSVNNSLYLGPILKFG 131
Query: 181 NVEQWKQFGTPFLTSGKIGCFALSEPANGSDAGAASTTARKDGDNWILNGTKSWITNGYE 360
+ +Q +Q+ TPF KIGCFALSEP NGSDAGAASTTAR++GD+W+LNGTK+WITN +E
Sbjct: 132 SSQQKQQWITPFTNGDKIGCFALSEPGNGSDAGAASTTAREEGDSWVLNGTKAWITNSWE 191
Query: 361 SEAAIVFATTDKSLKHKGISAFIVPKPTPGLSLGKKEDKLGIRASSTCQLIFEDCKIPSS 540
+ A +VFA+TD+S ++KGISAF+VP PTPGL+LGKKEDKLGIRASST LIFEDC+IP
Sbjct: 192 ASATVVFASTDRSRQNKGISAFLVPMPTPGLTLGKKEDKLGIRASSTANLIFEDCRIPKE 251
Query: 541 NILGQPGFGFKIAMKTLDGGRXXXXXXXXXXXXXXXECAVDYSTKRQSFSQPIAKFQAIQ 720
N+LG+PG GFKIAM+TLD GR +CAV Y+ R +F P+ K Q IQ
Sbjct: 252 NLLGEPGMGFKIAMQTLDMGRIGIASQALGIAQASLDCAVKYAENRHAFGAPLTKLQNIQ 311
Query: 721 IKLADMASRLEGARLLTWKAARKYDKGEPFTKDXXXXXXXXXXXXTFISHQAIQILGGMG 900
KLADMA LE ARLLTW+AA D +PFTK+ T ISHQAIQILGGMG
Sbjct: 312 FKLADMALALESARLLTWRAAMLKDNKKPFTKESAMAKLAASEAATAISHQAIQILGGMG 371
Query: 901 YVTDMPAE 924
YVT+MPAE
Sbjct: 372 YVTEMPAE 379
>sp|Q07417|ACADS_MOUSE Acyl-CoA dehydrogenase, short-chain specific, mitochondrial
precursor (SCAD) (Butyryl-CoA dehydrogenase)
Length = 412
Score = 387 bits (994), Expect = e-107
Identities = 190/308 (61%), Positives = 232/308 (75%)
Frame = +1
Query: 1 KRLGHLGLLSLIVPESKGGSGLDYLAYTIAMEEISRGCASVGVVMTAHNSLYLAPLLKYG 180
K++G LGLL++ VPE G+GL YLAY+IA+EEISR CAS GV+M+ +NSLYL P+LK+G
Sbjct: 72 KKMGELGLLAMDVPEELSGAGLGYLAYSIALEEISRACASTGVIMSVNNSLYLGPILKFG 131
Query: 181 NVEQWKQFGTPFLTSGKIGCFALSEPANGSDAGAASTTARKDGDNWILNGTKSWITNGYE 360
+ +Q +Q+ TPF KIGCFALSEP NGSDAGAASTTAR++GD+W+LNGTK+WITN +E
Sbjct: 132 SAQQKQQWITPFTNGDKIGCFALSEPGNGSDAGAASTTAREEGDSWVLNGTKAWITNSWE 191
Query: 361 SEAAIVFATTDKSLKHKGISAFIVPKPTPGLSLGKKEDKLGIRASSTCQLIFEDCKIPSS 540
+ A +VFA+TD+S ++KGISAF+VP PTPGL+LGKKEDKLGIRASST LIFEDC+IP
Sbjct: 192 ASATVVFASTDRSRQNKGISAFLVPMPTPGLTLGKKEDKLGIRASSTANLIFEDCRIPKE 251
Query: 541 NILGQPGFGFKIAMKTLDGGRXXXXXXXXXXXXXXXECAVDYSTKRQSFSQPIAKFQAIQ 720
N+LG+PG GFKIAM+TLD GR +CAV Y+ R +F P+ K Q IQ
Sbjct: 252 NLLGEPGMGFKIAMQTLDMGRIGIASQALGIAQASLDCAVKYAENRNAFGAPLTKLQNIQ 311
Query: 721 IKLADMASRLEGARLLTWKAARKYDKGEPFTKDXXXXXXXXXXXXTFISHQAIQILGGMG 900
KLADMA LE ARLLTW+AA D +PFTK+ T ISHQAIQILG MG
Sbjct: 312 FKLADMALALESARLLTWRAAMLKDNKKPFTKESAMRKLAASEAATAISHQAIQILGSMG 371
Query: 901 YVTDMPAE 924
YVT+MPAE
Sbjct: 372 YVTEMPAE 379
>sp|P79273|ACADS_PIG Acyl-CoA dehydrogenase, short-chain specific, mitochondrial
precursor (SCAD) (Butyryl-CoA dehydrogenase)
Length = 413
Score = 385 bits (989), Expect = e-107
Identities = 191/309 (61%), Positives = 236/309 (76%), Gaps = 1/309 (0%)
Frame = +1
Query: 1 KRLGHLGLLSLIVPESKGGSGLDYLAYTIAMEEISRGCASVGVVMTAHNSLYLAPLLKYG 180
K++G LGL+++ VPE G+GLDYLAYTIAMEEISRGCAS GV+M+ +N LYL P+LK+G
Sbjct: 72 KKMGELGLMAMDVPEELSGAGLDYLAYTIAMEEISRGCASTGVIMSVNNFLYLGPILKFG 131
Query: 181 NVEQWKQFGTPFLTSGKIGCFALSEPANGSDAGAASTTARKDGDNWILNGTKSWITNGYE 360
+ EQ +Q+ TPF + K+GCFALSEP NGSDAGAA+TTA+ D D+W+L+GTK+WITN +E
Sbjct: 132 SKEQKQQWITPFTSGDKVGCFALSEPGNGSDAGAAATTAQADHDSWVLSGTKAWITNAWE 191
Query: 361 SEAAIVFATTDKSLKHKGISAFIVPKPTPGLSLGKKEDKLGIRASSTCQLIFEDCKIPSS 540
+ AA+VFA+TD+SL++KGISAF+VP PT GL+LGKKEDKLGIRASST LIFEDC+IP
Sbjct: 192 ASAAVVFASTDRSLQNKGISAFLVPMPTAGLTLGKKEDKLGIRASSTANLIFEDCRIPKE 251
Query: 541 NILGQPGFGFKIAMKTLDGGRXXXXXXXXXXXXXXXECAVDYSTKRQSFSQPIAKFQAIQ 720
N+LG+PG GFKIAMKTLD GR +CAV+Y+ R++F P+ K Q IQ
Sbjct: 252 NLLGEPGMGFKIAMKTLDMGRIGIASKALGISQAALDCAVNYAENRRAFGVPLTKLQGIQ 311
Query: 721 IKLADMASRLEGARLLTWKAAR-KYDKGEPFTKDXXXXXXXXXXXXTFISHQAIQILGGM 897
KLADMA LE ARLLTW+AA K +K PF K+ T I+HQAIQILGGM
Sbjct: 312 FKLADMALALESARLLTWRAAMLKDNKKNPFIKEPAMAKLAASEAATAITHQAIQILGGM 371
Query: 898 GYVTDMPAE 924
GYVT+MPAE
Sbjct: 372 GYVTEMPAE 380
>sp|P45867|ACDA_BACSU Acyl-CoA dehydrogenase
Length = 379
Score = 260 bits (665), Expect = 3e-69
Identities = 140/308 (45%), Positives = 189/308 (61%)
Frame = +1
Query: 1 KRLGHLGLLSLIVPESKGGSGLDYLAYTIAMEEISRGCASVGVVMTAHNSLYLAPLLKYG 180
+ + +LGL + PE GG G DYLAY IA+EE+S+ CAS GV ++AH SL PL +G
Sbjct: 43 REMANLGLTGIPWPEDYGGIGSDYLAYVIAVEELSKVCASTGVTLSAHISLCSWPLFAFG 102
Query: 181 NVEQWKQFGTPFLTSGKIGCFALSEPANGSDAGAASTTARKDGDNWILNGTKSWITNGYE 360
EQ ++ T KIG FAL+E +GSDAG+ TTA + GD+++LNG+K +ITNG
Sbjct: 103 TEEQKTEYLTQLALGEKIGAFALTEAGSGSDAGSMKTTAERIGDDYVLNGSKVFITNGGV 162
Query: 361 SEAAIVFATTDKSLKHKGISAFIVPKPTPGLSLGKKEDKLGIRASSTCQLIFEDCKIPSS 540
++ IVFA TD K KG++AFIV K G GKKE KLGIR+S T +++FEDC +P+S
Sbjct: 163 ADIYIVFAVTDPEKKKKGVTAFIVEKDFEGFFTGKKEKKLGIRSSPTTEIMFEDCVVPAS 222
Query: 541 NILGQPGFGFKIAMKTLDGGRXXXXXXXXXXXXXXXECAVDYSTKRQSFSQPIAKFQAIQ 720
LG+ G GFKIAMKTLDGGR + A+ Y+ +R+ F + IA+ Q I
Sbjct: 223 KRLGEEGEGFKIAMKTLDGGRNGIAAQAVGIAQGALDAALQYAKERKQFGKSIAEQQGIA 282
Query: 721 IKLADMASRLEGARLLTWKAARKYDKGEPFTKDXXXXXXXXXXXXTFISHQAIQILGGMG 900
KLADMA+ +E +RLLT++AA G P+ K ++ +A+QI GG G
Sbjct: 283 FKLADMATMIEASRLLTYQAAWLESSGLPYGKASAMSKLMAGDTAMKVTTEAVQIFGGYG 342
Query: 901 YVTDMPAE 924
Y D P E
Sbjct: 343 YTKDYPVE 350
>sp|P52042|ACDS_CLOAB Acyl-CoA dehydrogenase, short-chain specific (SCAD) (Butyryl-CoA
dehydrogenase)
Length = 379
Score = 233 bits (593), Expect = 7e-61
Identities = 122/308 (39%), Positives = 183/308 (59%)
Frame = +1
Query: 1 KRLGHLGLLSLIVPESKGGSGLDYLAYTIAMEEISRGCASVGVVMTAHNSLYLAPLLKYG 180
K++G G++ + + GG+G D L+Y IA+EE+S+ C + GV+++AH SL + + ++G
Sbjct: 43 KKMGQYGMMGIPFSKEYGGAGGDVLSYIIAVEELSKVCGTTGVILSAHTSLCASLINEHG 102
Query: 181 NVEQWKQFGTPFLTSGKIGCFALSEPANGSDAGAASTTARKDGDNWILNGTKSWITNGYE 360
EQ +++ P KIG + L+EP G+D+GA T A +GD++++NG+K +ITNG
Sbjct: 103 TEEQKQKYLVPLAKGEKIGAYGLTEPNAGTDSGAQQTVAVLEGDHYVINGSKIFITNGGV 162
Query: 361 SEAAIVFATTDKSLKHKGISAFIVPKPTPGLSLGKKEDKLGIRASSTCQLIFEDCKIPSS 540
++ ++FA TD++ KGISAFI+ K G S+GK E KLGIRASST +L+FED +P
Sbjct: 163 ADTFVIFAMTDRTKGTKGISAFIIEKGFKGFSIGKVEQKLGIRASSTTELVFEDMIVPVE 222
Query: 541 NILGQPGFGFKIAMKTLDGGRXXXXXXXXXXXXXXXECAVDYSTKRQSFSQPIAKFQAIQ 720
N++G+ G GF IAMKTLDGGR A Y +R+ F + + KFQ +
Sbjct: 223 NMIGKEGKGFPIAMKTLDGGRIGIAAQALGIAEGAFNEARAYMKERKQFGRSLDKFQGLA 282
Query: 721 IKLADMASRLEGARLLTWKAARKYDKGEPFTKDXXXXXXXXXXXXTFISHQAIQILGGMG 900
+ADM +E AR L +KAA G P+T D ++ +A+Q+ GG G
Sbjct: 283 WMMADMDVAIESARYLVYKAAYLKQAGLPYTVDAARAKLHAANVAMDVTTKAVQLFGGYG 342
Query: 901 YVTDMPAE 924
Y D P E
Sbjct: 343 YTKDYPVE 350
>sp|Q06319|ACDS_MEGEL Acyl-CoA dehydrogenase, short-chain specific (SCAD) (Butyryl-CoA
dehydrogenase) (BCAD)
Length = 383
Score = 229 bits (585), Expect = 6e-60
Identities = 128/305 (41%), Positives = 180/305 (59%), Gaps = 4/305 (1%)
Frame = +1
Query: 16 LGLLSLIVPESKGGSGLD---YLAYTIAMEEISRGCASVGVVMTAHNSLYLAPLLKYGNV 186
LG+ E GGSG D L+Y +A+EE+++ A V + ++A SL P+ ++G
Sbjct: 48 LGITGAYFEEKYGGSGDDGGDVLSYILAVEELAKYDAGVAITLSATVSLCANPIWQFGTE 107
Query: 187 EQWKQFGTPFLTSGKIGCFALSEPANGSDAGAASTTARKDGDN-WILNGTKSWITNGYES 363
Q ++F P + K+G F L+EP G+DA T A K+ D + LNG+K +ITNG +
Sbjct: 108 AQKEKFLVPLVEGTKLGAFGLTEPNAGTDASGQQTIATKNDDGTYTLNGSKIFITNGGAA 167
Query: 364 EAAIVFATTDKSLKHKGISAFIVPKPTPGLSLGKKEDKLGIRASSTCQLIFEDCKIPSSN 543
+ IVFA TDKS + GI+AFI+ TPG + GKKEDK+GI S T +L+F+D K+P+ N
Sbjct: 168 DIYIVFAMTDKSKGNHGITAFILEDGTPGFTYGKKEDKMGIHTSQTMELVFQDVKVPAEN 227
Query: 544 ILGQPGFGFKIAMKTLDGGRXXXXXXXXXXXXXXXECAVDYSTKRQSFSQPIAKFQAIQI 723
+LG+ G GFKIAM TLDGGR AV+YS +R F +P+ KFQ+I
Sbjct: 228 MLGEEGKGFKIAMMTLDGGRIGVAAQALGIAEAALADAVEYSKQRVQFGKPLCKFQSISF 287
Query: 724 KLADMASRLEGARLLTWKAARKYDKGEPFTKDXXXXXXXXXXXXTFISHQAIQILGGMGY 903
KLADM ++E AR L +KAA K +G+PFT D ++ +A+QI GG GY
Sbjct: 288 KLADMKMQIEAARNLVYKAACKKQEGKPFTVDAAIAKRVASDVAMRVTTEAVQIFGGYGY 347
Query: 904 VTDMP 918
+ P
Sbjct: 348 SEEYP 352
>sp|P45857|ACDB_BACSU Acyl-CoA dehydrogenase
Length = 378
Score = 229 bits (583), Expect = 1e-59
Identities = 133/309 (43%), Positives = 186/309 (60%), Gaps = 1/309 (0%)
Frame = +1
Query: 1 KRLGHLGLLSLIVPESKGGSGLDYLAYTIAMEEISRGCASVGVVMTAHNSLYLAPLLKYG 180
K++G GL+ + VPE GG+G D ++Y +A+ EISR A+VGV+++ H S+ P+L +G
Sbjct: 41 KKMGKHGLMGIPVPEQYGGAGADVVSYILAIHEISRISAAVGVILSVHTSVGTNPILYFG 100
Query: 181 NVEQWKQFGTPFLTSGK-IGCFALSEPANGSDAGAASTTARKDGDNWILNGTKSWITNGY 357
N EQ ++ P L SG +G FAL+EP +GSDAG+ TTA K ++LNG+K +ITNG
Sbjct: 101 NEEQKMKY-IPNLASGDHLGAFALTEPHSGSDAGSLRTTAIKKNGKYLLNGSKIFITNGG 159
Query: 358 ESEAAIVFATTDKSLKHKGISAFIVPKPTPGLSLGKKEDKLGIRASSTCQLIFEDCKIPS 537
++ I FA T GISAFIV K TPG ++GKKE KLG+ S+T +LIF++ ++P
Sbjct: 160 AADIYITFALTAPDQGRHGISAFIVEKNTPGFTVGKKERKLGLYGSNTTELIFDNAEVPE 219
Query: 538 SNILGQPGFGFKIAMKTLDGGRXXXXXXXXXXXXXXXECAVDYSTKRQSFSQPIAKFQAI 717
+N+LG+ G GF IAM L+ GR E AVDY+ +R F +PIA Q I
Sbjct: 220 ANLLGKEGDGFHIAMANLNVGRIGIAAQALGIAEAALEHAVDYAKQRVQFGRPIAANQGI 279
Query: 718 QIKLADMASRLEGARLLTWKAARKYDKGEPFTKDXXXXXXXXXXXXTFISHQAIQILGGM 897
KLADMA+R E AR L + AA +++G K+ + A+QI GG
Sbjct: 280 SFKLADMATRAEAARHLVYHAADLHNRGLNCGKE-ASMAKQFASDAAVKALDAVQIYGGY 338
Query: 898 GYVTDMPAE 924
GY+ D P E
Sbjct: 339 GYMKDYPVE 347
>sp|P12007|IVD_RAT Isovaleryl-CoA dehydrogenase, mitochondrial precursor (IVD)
Length = 424
Score = 223 bits (568), Expect = 6e-58
Identities = 126/309 (40%), Positives = 177/309 (57%), Gaps = 3/309 (0%)
Frame = +1
Query: 1 KRLGHLGLLSLIVPESKGGSGLDYLAYTIAMEEISRGCASVGVVMTAHNSLYLAPLLKYG 180
K+LG LG+L + P GGSGL YL + + MEEISR A+VG+ AH++L + +++ G
Sbjct: 83 KQLGSLGVLGITAPVQYGGSGLGYLEHVLVMEEISRASAAVGLSYGAHSNLCINQIVRNG 142
Query: 181 NVEQWKQFGTPFLTSGK-IGCFALSEPANGSDAGAASTTARKDGDNWILNGTKSWITNGY 357
N Q +++ P L SG+ IG A+SEP GSD + A K GD+++LNG K WITNG
Sbjct: 143 NEAQKEKY-LPKLISGEFIGALAMSEPNAGSDVVSMRLKAEKKGDHYVLNGNKFWITNGP 201
Query: 358 ESEAAIVFATTDKSL--KHKGISAFIVPKPTPGLSLGKKEDKLGIRASSTCQLIFEDCKI 531
+++ +V+A TD + +GI+AFIV K PG S KK DKLG+R S+TC+L+FEDCK+
Sbjct: 202 DADVLVVYAKTDLTAVPASRGITAFIVEKDMPGFSTSKKLDKLGMRGSNTCELVFEDCKV 261
Query: 532 PSSNILGQPGFGFKIAMKTLDGGRXXXXXXXXXXXXXXXECAVDYSTKRQSFSQPIAKFQ 711
P++NIL Q G + M LD R + + Y R++F Q I +FQ
Sbjct: 262 PAANILSQESKGVYVLMSGLDLERLVLAGGPLGIMQAVLDHTIPYLHVREAFGQKIGQFQ 321
Query: 712 AIQIKLADMASRLEGARLLTWKAARKYDKGEPFTKDXXXXXXXXXXXXTFISHQAIQILG 891
+Q K+ADM +RL R + AR D+G KD T ++ IQ LG
Sbjct: 322 LMQGKMADMYTRLMACRQYVYNVARACDEGHITAKDCAGVILYTAECATQVALDGIQCLG 381
Query: 892 GMGYVTDMP 918
G GY+ D P
Sbjct: 382 GNGYINDFP 390
>sp|Q9JHI5|IVD_MOUSE Isovaleryl-CoA dehydrogenase, mitochondrial precursor (IVD)
Length = 424
Score = 220 bits (560), Expect = 5e-57
Identities = 123/309 (39%), Positives = 177/309 (57%), Gaps = 3/309 (0%)
Frame = +1
Query: 1 KRLGHLGLLSLIVPESKGGSGLDYLAYTIAMEEISRGCASVGVVMTAHNSLYLAPLLKYG 180
K+LG LG+L + P GGSGL YL + + MEEISR +VG+ AH++L + +++ G
Sbjct: 83 KQLGSLGVLGITAPVQYGGSGLGYLEHVLVMEEISRASGAVGLSYGAHSNLCVNQIVRNG 142
Query: 181 NVEQWKQFGTPFLTSGK-IGCFALSEPANGSDAGAASTTARKDGDNWILNGTKSWITNGY 357
N Q +++ P L SG+ IG A+SEP GSD + A K GD+++LNG K WITNG
Sbjct: 143 NEAQKEKY-LPKLISGEFIGALAMSEPNAGSDVVSMKLKAEKKGDHYVLNGNKFWITNGP 201
Query: 358 ESEAAIVFATTDKSL--KHKGISAFIVPKPTPGLSLGKKEDKLGIRASSTCQLIFEDCKI 531
+++ +V+A TD + +GI+AFIV K PG S KK DKLG+R S+TC+L+FEDCK+
Sbjct: 202 DADILVVYAKTDLTAVPASRGITAFIVEKGMPGFSTSKKLDKLGMRGSNTCELVFEDCKV 261
Query: 532 PSSNILGQPGFGFKIAMKTLDGGRXXXXXXXXXXXXXXXECAVDYSTKRQSFSQPIAKFQ 711
P++N+L Q G + M LD R + + Y R++F Q I +FQ
Sbjct: 262 PAANVLSQESKGVYVLMSGLDLERLVLAGGPLGIMQAVLDHTIPYLHVREAFGQKIGQFQ 321
Query: 712 AIQIKLADMASRLEGARLLTWKAARKYDKGEPFTKDXXXXXXXXXXXXTFISHQAIQILG 891
+Q K+ADM +RL +R + A+ D+G KD T ++ IQ LG
Sbjct: 322 LMQGKMADMYTRLMASRQYVYNVAKACDEGHIIPKDCAGVILYAAECATQVALDGIQCLG 381
Query: 892 GMGYVTDMP 918
G GY+ D P
Sbjct: 382 GNGYINDFP 390
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.317 0.134 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 106,358,481
Number of Sequences: 369166
Number of extensions: 2088490
Number of successful extensions: 5009
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4720
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4861
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9462723610
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)