Planaria EST Database

DrC_00701

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00701
         (1465 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P39429|TRAF2_MOUSE  TNF receptor-associated factor 2           120   1e-26
sp|Q13114|TRAF3_HUMAN  TNF receptor-associated factor 3 (CD4...   118   5e-26
sp|Q60803|TRAF3_MOUSE  TNF receptor-associated factor 3 (CD4...   118   5e-26
sp|Q12933|TRAF2_HUMAN  TNF receptor-associated factor 2 (Tum...   117   1e-25
sp|P70191|TRAF5_MOUSE  TNF receptor-associated factor 5           113   1e-24
sp|O00463|TRAF5_HUMAN  TNF receptor-associated factor 5 (RIN...   113   2e-24
sp|Q9BUZ4|TRAF4_HUMAN  TNF receptor-associated factor 4 (Cys...   103   2e-21
sp|Q61382|TRAF4_MOUSE  TNF receptor-associated factor 4 (Cys...   102   3e-21
sp|Q13077|TRAF1_HUMAN  TNF receptor-associated factor 1 (Eps...    97   1e-19
sp|P39428|TRAF1_MOUSE  TNF receptor-associated factor 1            97   1e-19

>sp|P39429|TRAF2_MOUSE TNF receptor-associated factor 2
          Length = 501

 Score =  120 bits (301), Expect = 1e-26
 Identities = 86/286 (30%), Positives = 143/286 (50%), Gaps = 8/286 (2%)
 Frame = +2

Query: 551  CDEQTRKIDLLNEEIVKLR-NVDKLMREDLDKLKLGGERDKKSIKSLQKKCEQQNKQIEQ 727
            C E     +L + E+ +LR ++  L+   L+     G  ++   + LQ+ C+   ++I  
Sbjct: 223  CSEMVETENLQDHELQRLREHLALLLSSFLEAQASPGTLNQVGPELLQR-CQILEQKIAT 281

Query: 728  FNNKY----QQIENKFVNAKLERENKEKDLMRNIDEMKNKQIEMTTRSNKIDKTMKNVEN 895
            F N      +++E   V A+        D    I+ + NK  ++       D  M ++E 
Sbjct: 282  FENIVCVLNREVERVAVTAEACSRQHRLD-QDKIEALSNKVQQLERSIGLKDLAMADLEQ 340

Query: 896  KLLEIEINQNKMRNGEFVWRIDKINDKMKDAKNGINTYIYSDSFYTHKHGYKMCLRVDPD 1075
            K+ E+E++     +G F+W+I     K ++A  G    I+S +FYT ++GYKMCLRV  +
Sbjct: 341  KVSELEVSTY---DGVFIWKISDFTRKRQEAVAGRTPAIFSPAFYTSRYGYKMCLRVYLN 397

Query: 1076 GHGDGEGTHLSLYFCLMIGEFDDILQWPFKYDVRLSLINQQTRLDHVNKKIKYNDFPND- 1252
            G G G GTHLSL+F +M G  D +LQWPF   V L L      LDH N++   + F  D 
Sbjct: 398  GDGTGRGTHLSLFFVVMKGPNDALLQWPFNQKVTLML------LDHNNREHVIDAFRPDV 451

Query: 1253 --ELWNKPVNERNIGFGRSKFIELKELSTNANLILNNQIFIKCSVN 1384
                + +PV++ NI  G   F  + ++    + + ++ IFIK  V+
Sbjct: 452  TSSSFQRPVSDMNIASGCPLFCPVSKMEAKNSYVRDDAIFIKAIVD 497


 Score = 36.2 bits (82), Expect = 0.25
 Identities = 35/157 (22%), Positives = 70/157 (44%), Gaps = 1/157 (0%)
 Frame = +2

Query: 5   SIEDHIRICNYRPVSCPYLNIGCNSSNMHAGNVSDHLQLEIGNHSKLLIDCIDNLNNEIG 184
           + +DH+R C+   V C +  +GC S  +   N+ DH    +  H  LL+          G
Sbjct: 201 TFQDHVRACSKCRVLCRFHTVGC-SEMVETENLQDHELQRLREHLALLLSSFLEAQASPG 259

Query: 185 RLKISVDKLGEENKMLKCEINEIKLDGERKQMKCDEQEREIVLLNEDMVALRNVDKYMRD 364
            L    +++G E  + +C+I E K+      +    +E E V +  +  A     +  +D
Sbjct: 260 TL----NQVGPE-LLQRCQILEQKIATFENIVCVLNREVERVAVTAE--ACSRQHRLDQD 312

Query: 365 DVDELKLDGERKQREIDKLNKKLQEMELKF-EIEIKS 472
            ++ L    ++ +R I   +  + ++E K  E+E+ +
Sbjct: 313 KIEALSNKVQQLERSIGLKDLAMADLEQKVSELEVST 349

>sp|Q13114|TRAF3_HUMAN TNF receptor-associated factor 3 (CD40 receptor associated factor 1)
            (CRAF1) (CD40 binding protein) (CD40BP) (LMP1 associated
            protein) (LAP1) (CAP-1)
          Length = 568

 Score =  118 bits (295), Expect = 5e-26
 Identities = 82/296 (27%), Positives = 144/296 (48%), Gaps = 23/296 (7%)
 Frame = +2

Query: 566  RKIDLLNEEIVKLRNVDKLMREDLDKLKLGGERDKKSIKSLQKKCEQQNKQIEQFNNKYQ 745
            +K+ LL  E V+     + +   +   ++  ER K+ +++ + K     + I+    K +
Sbjct: 272  KKVSLLQNESVEKNKSIQSLHNQICSFEIEIERQKEMLRNNESKILHLQRVIDSQAEKLK 331

Query: 746  QIENKFVNAKLEREN-KEKDLMRN-IDEMKNKQIEMTTRSNKIDKTMKN---VENKL--- 901
            +++ +    +  R+N +E D M++ ++ ++N+  E+ +      +  +N   +E++L   
Sbjct: 332  ELDKEI---RPFRQNWEEADSMKSSVESLQNRVTELESVDKSAGQVARNTGLLESQLSRH 388

Query: 902  ---------------LEIEINQNKMRNGEFVWRIDKINDKMKDAKNGINTYIYSDSFYTH 1036
                           L  ++ +    NG  +W+I     + ++A  G    +YS  FYT 
Sbjct: 389  DQMLSVHDIRLADMDLRFQVLETASYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTG 448

Query: 1037 KHGYKMCLRVDPDGHGDGEGTHLSLYFCLMIGEFDDILQWPFKYDVRLSLINQQTRLDHV 1216
              GYKMC RV  +G G G+GTHLSL+F +M GE+D +L WPFK  V L L++Q +   H+
Sbjct: 449  YFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQKVTLMLMDQGSSRRHL 508

Query: 1217 NKKIKYNDFPNDELWNKPVNERNIGFGRSKFIELKELSTNANLILNNQIFIKCSVN 1384
                K +  PN   + KP  E NI  G   F+    L  N   I ++ IFIK  V+
Sbjct: 509  GDAFKPD--PNSSSFKKPTGEMNIASGCPVFVAQTVLE-NGTYIKDDTIFIKVIVD 561

>sp|Q60803|TRAF3_MOUSE TNF receptor-associated factor 3 (CD40 receptor associated factor 1)
            (CRAF1) (TRAFAMN)
          Length = 567

 Score =  118 bits (295), Expect = 5e-26
 Identities = 82/296 (27%), Positives = 144/296 (48%), Gaps = 23/296 (7%)
 Frame = +2

Query: 566  RKIDLLNEEIVKLRNVDKLMREDLDKLKLGGERDKKSIKSLQKKCEQQNKQIEQFNNKYQ 745
            +K+ LL  E V+     + +   +   ++  ER K+ +++ + K     + I+    K +
Sbjct: 271  KKVSLLQNESVEKNKSIQSLHNQICSFEIEIERQKEMLRNNESKILHLQRVIDSQAEKLK 330

Query: 746  QIENKFVNAKLEREN-KEKDLMRN-IDEMKNKQIEMTTRSNKIDKTMKN---VENKL--- 901
            +++ +    +  R+N +E D M++ ++ ++N+  E+ +      +  +N   +E++L   
Sbjct: 331  ELDKEI---RPFRQNWEEADSMKSSVESLQNRVTELESVDKSAGQAARNTGLLESQLSRH 387

Query: 902  ---------------LEIEINQNKMRNGEFVWRIDKINDKMKDAKNGINTYIYSDSFYTH 1036
                           L  ++ +    NG  +W+I     + ++A  G    +YS  FYT 
Sbjct: 388  DQTLSVHDIRLADMDLRFQVLETASYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTG 447

Query: 1037 KHGYKMCLRVDPDGHGDGEGTHLSLYFCLMIGEFDDILQWPFKYDVRLSLINQQTRLDHV 1216
              GYKMC RV  +G G G+GTHLSL+F +M GE+D +L WPFK  V L L++Q +   H+
Sbjct: 448  YFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQKVTLMLMDQGSSRRHL 507

Query: 1217 NKKIKYNDFPNDELWNKPVNERNIGFGRSKFIELKELSTNANLILNNQIFIKCSVN 1384
                K +  PN   + KP  E NI  G   F+    L  N   I ++ IFIK  V+
Sbjct: 508  GDAFKPD--PNSSSFKKPTGEMNIASGCPVFVAQTVLE-NGTYIKDDTIFIKVIVD 560

>sp|Q12933|TRAF2_HUMAN TNF receptor-associated factor 2 (Tumor necrosis factor type 2
            receptor-associated protein 3)
          Length = 501

 Score =  117 bits (292), Expect = 1e-25
 Identities = 81/279 (29%), Positives = 141/279 (50%), Gaps = 3/279 (1%)
 Frame = +2

Query: 557  EQTRKIDLLNEEIVKLRNVDKLMREDLDKLKLGGERDKKSIKSLQKKCEQQNKQIEQFNN 736
            +Q  ++  L E +  L      +   L+   L G++     + LQ+ CE   K+   F N
Sbjct: 232  QQEHEVQWLREHLAML------LSSVLEAKPLLGDQSHAGSELLQR-CESLEKKTATFEN 284

Query: 737  KYQQIENKFVNAKLERE--NKEKDLMRNIDEMKNKQIEMTTRSNKI-DKTMKNVENKLLE 907
                +  +     +  E  +++  L ++  E  + +++   RS  + D  M ++E K+LE
Sbjct: 285  IVCVLNREVERVAMTAEACSRQHRLDQDKIEALSSKVQQLERSIGLKDLAMADLEQKVLE 344

Query: 908  IEINQNKMRNGEFVWRIDKINDKMKDAKNGINTYIYSDSFYTHKHGYKMCLRVDPDGHGD 1087
            +E +     +G F+W+I     K ++A  G    I+S +FYT ++GYKMCLR+  +G G 
Sbjct: 345  MEASTY---DGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGT 401

Query: 1088 GEGTHLSLYFCLMIGEFDDILQWPFKYDVRLSLINQQTRLDHVNKKIKYNDFPNDELWNK 1267
            G GTHLSL+F +M G  D +L+WPF   V L L++Q  R +HV    + +       + +
Sbjct: 402  GRGTHLSLFFVVMKGPNDALLRWPFNQKVTLMLLDQNNR-EHVIDAFRPD--VTSSSFQR 458

Query: 1268 PVNERNIGFGRSKFIELKELSTNANLILNNQIFIKCSVN 1384
            PVN+ NI  G   F  + ++    + + ++ IFIK  V+
Sbjct: 459  PVNDMNIASGCPLFCPVSKMEAKNSYVRDDAIFIKAIVD 497

>sp|P70191|TRAF5_MOUSE TNF receptor-associated factor 5
          Length = 558

 Score =  113 bits (283), Expect = 1e-24
 Identities = 110/483 (22%), Positives = 200/483 (41%), Gaps = 25/483 (5%)
 Frame = +2

Query: 11   EDHIRICNYRPVSCPYLNIGCNSSNMHAGNVSDHLQLEIGNHSKLLIDC-----IDNLNN 175
            +DH++ C+++ V CP  N  C  + +   +V +HL        +  + C     + NL +
Sbjct: 126  QDHLQHCSFQAVPCP--NESCREAMLRK-DVKEHLSAYCRFREEKCLYCKRDIVVTNLQD 182

Query: 176  EI------------GRLKISVDKLGEENKMLKCEINEIKLDGERKQMKCDEQ-------E 298
                           R   ++ +      +  C   E + D   K   C  +       E
Sbjct: 183  HEENSCPAYPVSCPNRCVQTIPRARVNEHLTVCP--EAEQDCPFKHYGCTVKGKRGNLLE 240

Query: 299  REIVLLNEDMVALRNVDKYMRDDVDELKLDGERKQREIDKLNKKLQEMELKFEIEIKSNI 478
             E   L + M+ +   +  +   + +L    E+K+ +I +L + ++    KFE E+K   
Sbjct: 241  HERAALQDHMLLVLEKNYQLEQRISDLYQSLEQKESKIQQLAETVK----KFEKELK--- 293

Query: 479  EKEFDKLKLDGXXXXXXXXXXXXXCDEQTRKIDLLNEEIVKLRNVDKLMREDLDKLKLGG 658
              +F ++                     T K   L  ++ +L  +       LD      
Sbjct: 294  --QFTQM----FGRNGTFLSNVQALTSHTDKSAWLEAQVRQLLQIVNQQPSRLD------ 341

Query: 659  ERDKKSIKSLQKKCEQQNKQIEQFNNKYQQIENKFVNAKLERENKEKDLMRNIDEMKNKQ 838
                  ++SL    +   ++I Q     Q++        LE E  + D   NI +     
Sbjct: 342  ------LRSLVDAVDSVKQRITQLEASDQRL------VLLEGETSKHDAHINIHK----- 384

Query: 839  IEMTTRSNKIDKTMKNVENKLLEIEINQNKMRNGEFVWRIDKINDKMKDAKNGINTYIYS 1018
                 + NK ++  K +E              +G+ +W++     K ++A  G    ++S
Sbjct: 385  ----AQLNKNEERFKQLEGACY----------SGKLIWKVTDYRVKKREAVEGHTVSVFS 430

Query: 1019 DSFYTHKHGYKMCLRVDPDGHGDGEGTHLSLYFCLMIGEFDDILQWPFKYDVRLSLINQQ 1198
              FYT + GY++C R   +G G G+GTHLSLYF +M GEFD +LQWPF+  V L L++Q 
Sbjct: 431  QPFYTSRCGYRLCARAYLNGDGSGKGTHLSLYFVVMRGEFDSLLQWPFRQRVTLMLLDQS 490

Query: 1199 TRLDHVNKKIKYNDFPNDELWNKPVNERNIGFGRSKFIELKELSTNAN-LILNNQIFIKC 1375
             + +H+ +  K +  PN   + +P  E NI  G  +F+    L  + N  I ++ +F+K 
Sbjct: 491  GKKNHIVETFKAD--PNSSSFKRPDGEMNIASGCPRFVSHSTLENSKNTYIKDDTLFLKV 548

Query: 1376 SVN 1384
            +V+
Sbjct: 549  AVD 551


 Score = 34.7 bits (78), Expect = 0.72
 Identities = 21/90 (23%), Positives = 43/90 (47%)
 Frame = +2

Query: 8   IEDHIRICNYRPVSCPYLNIGCNSSNMHAGNVSDHLQLEIGNHSKLLIDCIDNLNNEIGR 187
           + +H+ +C      CP+ + GC       GN+ +H +  + +H  L+++    L   I  
Sbjct: 208 VNEHLTVCPEAEQDCPFKHYGCTVKGKR-GNLLEHERAALQDHMLLVLEKNYQLEQRISD 266

Query: 188 LKISVDKLGEENKMLKCEINEIKLDGERKQ 277
           L  S+++  +E+K+ +      K + E KQ
Sbjct: 267 LYQSLEQ--KESKIQQLAETVKKFEKELKQ 294

>sp|O00463|TRAF5_HUMAN TNF receptor-associated factor 5 (RING finger protein 84)
          Length = 557

 Score =  113 bits (282), Expect = 2e-24
 Identities = 113/471 (23%), Positives = 199/471 (42%), Gaps = 13/471 (2%)
 Frame = +2

Query: 11   EDHIRICNYRPVSCPYLNIGCNSSNMHAGNVSDHLQLEIGNHSKLLIDC-----IDNLNN 175
            +DH++ C ++PV C   N  C    +   ++ +HL        +  + C     + NL N
Sbjct: 126  QDHLQQCLFQPVQCS--NEKCREPVLRK-DLKEHLSASCQFRKEKCLYCKKDVVVINLQN 182

Query: 176  EIGRLKISVDKLGEENK---MLKCEINEIKLDGERKQMKCDEQEREIVLLNEDMVALRNV 346
                L          N    +LK E++E        +  C  +     + ++     ++ 
Sbjct: 183  HEENLCPEYPVFCPNNCAKIILKTEVDEHLAVCPEAEQDCPFKHYGCAVTDKRRNLQQHE 242

Query: 347  DKYMRDDVDELKLDGERKQREIDKLNKKLQEMELKFE--IEIKSNIEKEFDKL-KLDGXX 517
               +R+ +  +     + + +I  L+K L++ E K +   E    +EKEF +  +L G  
Sbjct: 243  HSALREHMRLVLEKNVQLEEQISDLHKSLEQKESKIQQLAETIKKLEKEFKQFAQLFGKN 302

Query: 518  XXXXXXXXXXXCDEQTRKIDLLNEEIVKLRNVDKLMREDLDKLKLGGERDKKSIKSLQKK 697
                              I +    I K   ++  + + L  +    +++K  ++ L + 
Sbjct: 303  GSFLP------------NIQVFASHIDKSAWLEAQVHQLLQMVNQ--QQNKFDLRPLMEA 348

Query: 698  CEQQNKQIEQFNNKYQQIENKFVNAKLERENKEKDLMRNIDEMKNKQIEMTTRSNKIDKT 877
             +   ++I    N  Q++      A LE E  + D   NI + +                
Sbjct: 349  VDTVKQKITLLENNDQRL------AVLEEETNKHDTHINIHKAQ---------------L 387

Query: 878  MKNVEN-KLLEIEINQNKMRNGEFVWRIDKINDKMKDAKNGINTYIYSDSFYTHKHGYKM 1054
             KN E  KLLE         NG+ +W++     K ++A +G    I+S SFYT + GY++
Sbjct: 388  SKNEERFKLLE-----GTCYNGKLIWKVTDYKMKKREAVDGHTVSIFSQSFYTSRCGYRL 442

Query: 1055 CLRVDPDGHGDGEGTHLSLYFCLMIGEFDDILQWPFKYDVRLSLINQQTRLDHVNKKIKY 1234
            C R   +G G G G+HLSLYF +M GEFD +LQWPF+  V L L++Q  +    N    +
Sbjct: 443  CARAYLNGDGSGRGSHLSLYFVVMRGEFDSLLQWPFRQRVTLMLLDQSGK---KNIMETF 499

Query: 1235 NDFPNDELWNKPVNERNIGFGRSKFIELKELSTNAN-LILNNQIFIKCSVN 1384
               PN   + +P  E NI  G  +F+    L    N  I ++ +F+K +V+
Sbjct: 500  KPDPNSSSFKRPDGEMNIASGCPRFVAHSVLENAKNAYIKDDTLFLKVAVD 550


 Score = 35.0 bits (79), Expect = 0.55
 Identities = 21/90 (23%), Positives = 45/90 (50%)
 Frame = +2

Query: 8   IEDHIRICNYRPVSCPYLNIGCNSSNMHAGNVSDHLQLEIGNHSKLLIDCIDNLNNEIGR 187
           +++H+ +C      CP+ + GC  ++    N+  H    +  H +L+++    L  +I  
Sbjct: 208 VDEHLAVCPEAEQDCPFKHYGCAVTDKRR-NLQQHEHSALREHMRLVLEKNVQLEEQISD 266

Query: 188 LKISVDKLGEENKMLKCEINEIKLDGERKQ 277
           L  S+++  +E+K+ +      KL+ E KQ
Sbjct: 267 LHKSLEQ--KESKIQQLAETIKKLEKEFKQ 294

>sp|Q9BUZ4|TRAF4_HUMAN TNF receptor-associated factor 4 (Cysteine-rich domain associated
            with RING and Traf domains protein 1) (Malignant 62)
            (RING finger protein 83)
          Length = 470

 Score =  103 bits (256), Expect = 2e-21
 Identities = 58/202 (28%), Positives = 110/202 (54%), Gaps = 9/202 (4%)
 Frame = +2

Query: 803  LMRNIDE-MKNKQIEMTTRSNKIDKTMKNVENKLLEIEINQNKMRNGEFVWRIDKINDKM 979
            + R+++E +K     M    ++  + ++ +  +L E+ +  +    G  +W+I     ++
Sbjct: 266  MARHVEESVKPHLAMMCALVSRQRQELQELRRELEELSVGSD----GVLIWKIGSYGRRL 321

Query: 980  KDAKNGINTYIYSDSFYTHKHGYKMCLRVDPDGHGDGEGTHLSLYFCLMIGEFDDILQWP 1159
            ++AK   N   +S +FYTHK+GYK+ +    +G+G GEGTHLSLY  ++ G FD++L+WP
Sbjct: 322  QEAKAKPNLECFSPAFYTHKYGYKLQVSAFLNGNGSGEGTHLSLYIRVLPGAFDNLLEWP 381

Query: 1160 FKYDVRLSLINQQ----TRLDHVNKKI----KYNDFPNDELWNKPVNERNIGFGRSKFIE 1315
            F   V  SL++Q      +  HV +       + +F     W   ++E ++GFG  KFI 
Sbjct: 382  FARRVTFSLLDQSDPGLAKPQHVTETFHPDPNWKNFQKPGTWRGSLDESSLGFGYPKFIS 441

Query: 1316 LKELSTNANLILNNQIFIKCSV 1381
             +++    N + ++ +FI+ +V
Sbjct: 442  HQDI-RKRNYVRDDAVFIRAAV 462

>sp|Q61382|TRAF4_MOUSE TNF receptor-associated factor 4 (Cysteine-rich motif associated to
            RING and Traf domains protein 1)
          Length = 470

 Score =  102 bits (254), Expect = 3e-21
 Identities = 54/176 (30%), Positives = 97/176 (55%), Gaps = 8/176 (4%)
 Frame = +2

Query: 878  MKNVENKLLEIEINQNKMRNGEFVWRIDKINDKMKDAKNGINTYIYSDSFYTHKHGYKMC 1057
            ++ +  +L E+ I  +    G  +W+I     ++++AK   N   +S +FYTHK+GYK+ 
Sbjct: 292  LQELRRELEELSIGSD----GVLIWKIGSYGRRLQEAKAKPNLECFSPAFYTHKYGYKLQ 347

Query: 1058 LRVDPDGHGDGEGTHLSLYFCLMIGEFDDILQWPFKYDVRLSLINQQ----TRLDHVNKK 1225
            +    +G+G GEGTHLS+Y  ++ G FD++L+WP    V  SL++Q      +  HV + 
Sbjct: 348  VSASLNGNGSGEGTHLSIYIRVLPGAFDNLLEWPLARRVTFSLLDQSDPGLAKPQHVTET 407

Query: 1226 I----KYNDFPNDELWNKPVNERNIGFGRSKFIELKELSTNANLILNNQIFIKCSV 1381
                  + +F     W   ++E ++GFG  KFI  +++    N + ++ +FI+ SV
Sbjct: 408  FHPDPNWKNFQKPGTWRGSLDESSLGFGYPKFISHQDI-RKRNYVRDDAVFIRASV 462

>sp|Q13077|TRAF1_HUMAN TNF receptor-associated factor 1 (Epstein-Barr virus-induced protein
            6)
          Length = 416

 Score = 97.1 bits (240), Expect = 1e-19
 Identities = 61/233 (26%), Positives = 115/233 (49%), Gaps = 8/233 (3%)
 Frame = +2

Query: 707  QNKQIEQFNNKYQQIENKFVNAKLERENKEKDLMRNIDEM---KNKQIEMTTRSNKIDKT 877
            + K + +   K +  EN       E E     L  +I +    + + + +  R  ++ +T
Sbjct: 183  KEKLLAELEGKLRVFENIVAVLNKEVEASHLALATSIHQSQLDRERILSLEQRVVELQQT 242

Query: 878  MKNVENKLLEIEINQNKMR----NGEFVWRIDKINDKMKDAKNGINTYIYSDSFYTHKHG 1045
            +   +  L ++E +   M     +G F+W+I  +  +  ++  G    ++S +FYT K+G
Sbjct: 243  LAQKDQALGKLEQSLRLMEEASFDGTFLWKITNVTRRCHESACGRTVSLFSPAFYTAKYG 302

Query: 1046 YKMCLRVDPDGHGDGEGTHLSLYFCLMIGEFDDILQWPFKYDVRLSLINQQTRLDHVNKK 1225
            YK+CLR+  +G G G+ THLSL+  +M GE+D +L WPF+  V   L++Q  R   ++  
Sbjct: 303  YKLCLRLYLNGDGTGKRTHLSLFIVIMRGEYDALLPWPFRNKVTFMLLDQNNREHAID-- 360

Query: 1226 IKYNDFPNDELWNKPVNERNIGFGRSKFIELKEL-STNANLILNNQIFIKCSV 1381
              +    +   + +P +E N+  G   F  L +L S     + ++ +F+KC V
Sbjct: 361  -AFRPDLSSASFQRPQSETNVASGCPLFFPLSKLQSPKHAYVKDDTMFLKCIV 412

>sp|P39428|TRAF1_MOUSE TNF receptor-associated factor 1
          Length = 409

 Score = 97.1 bits (240), Expect = 1e-19
 Identities = 55/218 (25%), Positives = 115/218 (52%), Gaps = 1/218 (0%)
 Frame = +2

Query: 734  NKYQQIENKFVNAKLERENKEKDLMRNIDEMKNKQIEMTTRSNKIDKTMKNVENKLLEIE 913
            NK  +  +  + A + +   +++ + ++++   + +E+     + D+ +  +E+ L    
Sbjct: 198  NKEVEASHLALAASIHQSQLDREHLLSLEQ---RVVELQQTLAQKDQVLGKLEHSL---R 251

Query: 914  INQNKMRNGEFVWRIDKINDKMKDAKNGINTYIYSDSFYTHKHGYKMCLRVDPDGHGDGE 1093
            + +    +G F+W+I  +  +  ++  G    ++S +FYT K+GYK+CLR+  +G G G+
Sbjct: 252  LMEEASFDGTFLWKITNVTKRCHESVCGRTVSLFSPAFYTAKYGYKLCLRLYLNGDGSGK 311

Query: 1094 GTHLSLYFCLMIGEFDDILQWPFKYDVRLSLINQQTRLDHVNKKIKYNDFPNDELWNKPV 1273
             THLSL+  +M GE+D +L WPF+  V   L++Q  R   ++    +    +   + +P 
Sbjct: 312  KTHLSLFIVIMRGEYDALLPWPFRNKVTFMLLDQNNREHAID---AFRPDLSSASFQRPQ 368

Query: 1274 NERNIGFGRSKFIELKEL-STNANLILNNQIFIKCSVN 1384
            +E N+  G   F  L +L S     + ++ +F+KC V+
Sbjct: 369  SETNVASGCPLFFPLSKLQSPKHAYVKDDTMFLKCIVD 406

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 125,496,514
Number of Sequences: 369166
Number of extensions: 2350724
Number of successful extensions: 12654
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 9933
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11958
length of database: 68,354,980
effective HSP length: 115
effective length of database: 47,110,455
effective search space used: 17525089260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00701

  1. Dr_sW_018_F11
  2. Dr_sW_018_M09
  3. Dr_sW_028_N10