Planaria EST Database

DrC_00695

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00695
         (1458 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P21187|PABP_DROME  Polyadenylate-binding protein (Poly(A)...   330   8e-90
sp|Q9EPH8|PABP1_RAT  Polyadenylate-binding protein 1 (Poly(A...   328   2e-89
sp|P11940|PABP1_HUMAN  Polyadenylate-binding protein 1 (Poly...   327   4e-89
sp|P29341|PABP1_MOUSE  Polyadenylate-binding protein 1 (Poly...   327   5e-89
sp|Q13310|PABP4_HUMAN  Polyadenylate-binding protein 4 (Poly...   326   1e-88
sp|P20965|PABP1_XENLA  Polyadenylate-binding protein 1 (Poly...   320   5e-87
sp|Q9H361|PABP3_HUMAN  Polyadenylate-binding protein 3 (Poly...   310   5e-84
sp|O64380|PABP3_ARATH  Polyadenylate-binding protein 3 (Poly...   284   5e-76
sp|P31209|PABP_SCHPO  Polyadenylate-binding protein (Poly(A)...   283   7e-76
sp|P04147|PABP_YEAST  Polyadenylate-binding protein, cytopla...   280   7e-75

>sp|P21187|PABP_DROME Polyadenylate-binding protein (Poly(A)-binding protein) (PABP)
          Length = 634

 Score =  330 bits (845), Expect = 8e-90
 Identities = 172/278 (61%), Positives = 206/278 (74%), Gaps = 3/278 (1%)
 Frame = +1

Query: 1   NILSCKIAADERSKSKGYGFVHFETEAAATNAIDAINGMLIKNKKVFVGRFIPRTSRANS 180
           NILSCK+A DE+  SKGYGFVHFETE AA  +ID +NGML+  KKV+VG+FIPR  R   
Sbjct: 115 NILSCKVATDEKGNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEREKE 174

Query: 181 --DSDVKFTNCYIKNFGEDLDDEKLREMFLEFGEITSAKVMIDENGKSKGFGFVCFKDSE 354
             +    FTN Y+KNF ED DDEKL+E F  +G+ITS KVM  E+GKSKGFGFV F+ +E
Sbjct: 175 LGEKAKLFTNVYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAFETTE 234

Query: 355 TAESAVKALNGK-MFKDRQLYVGRAQKKNERLDELRSHFEKQRAERSSRYTQGVNLYVKN 531
            AE+AV+ALNGK M + + LYV RAQKK ER  EL+  FE+ + +R      GVNLYVKN
Sbjct: 235 AAEAAVQALNGKDMGEGKSLYVARAQKKAERQQELKRKFEELKQKRHESVF-GVNLYVKN 293

Query: 532 LDDSIDDSRLKQEFVVFGNITSAKVMTDSNNRSKGFGFVCFSNPEEATKAVTEMNGKICG 711
           LDD+IDD RL+  F  +GNITSAKVMTD   RSKGFGFVCF+   EAT AVTE+NG++ G
Sbjct: 294 LDDTIDDDRLRIAFSPYGNITSAKVMTDEEGRSKGFGFVCFNAASEATCAVTELNGRVVG 353

Query: 712 SKPLYVALAQRKEDRKAHLASQYMQRVNPHRSSYPNQV 825
           SKPLYVALAQRKE+RKAHLASQYM+ +   R     Q+
Sbjct: 354 SKPLYVALAQRKEERKAHLASQYMRHMTGMRMQQLGQI 391


 Score =  162 bits (410), Expect = 2e-39
 Identities = 96/264 (36%), Positives = 149/264 (56%), Gaps = 5/264 (1%)
 Frame = +1

Query: 4   ILSCKIAADERSK-SKGYGFVHFETEAAATNAIDAINGMLIKNKKVFVGRFIPRTSRANS 180
           +LS ++  D  ++ S GY +V+F+  A A  A+D +N  L++NK +       R   +  
Sbjct: 28  VLSIRVCRDVITRRSLGYAYVNFQQPADAERALDTMNFDLVRNKPI-------RIMWSQR 80

Query: 181 DSDVKFT---NCYIKNFGEDLDDEKLREMFLEFGEITSAKVMIDENGKSKGFGFVCFKDS 351
           D  ++ +   N +IKN    +D++ + + F  FG I S KV  DE G SKG+GFV F+  
Sbjct: 81  DPSLRRSGVGNVFIKNLDRAIDNKAIYDTFSAFGNILSCKVATDEKGNSKGYGFVHFETE 140

Query: 352 ETAESAVKALNGKMFKDRQLYVGRAQKKNERLDELRSHFEKQRAERSSRYTQGVNLYVKN 531
           E A +++  +NG +   +++YVG+   + ER        EK+  E++  +T   N+YVKN
Sbjct: 141 EAANTSIDKVNGMLLNGKKVYVGKFIPRKER--------EKELGEKAKLFT---NVYVKN 189

Query: 532 LDDSIDDSRLKQEFVVFGNITSAKVMTDSNNRSKGFGFVCFSNPEEATKAVTEMNGKICG 711
             +  DD +LK+ F  +G ITS KVM+  + +SKGFGFV F   E A  AV  +NGK  G
Sbjct: 190 FTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQALNGKDMG 249

Query: 712 -SKPLYVALAQRKEDRKAHLASQY 780
             K LYVA AQ+K +R+  L  ++
Sbjct: 250 EGKSLYVARAQKKAERQQELKRKF 273


 Score = 86.3 bits (212), Expect = 2e-16
 Identities = 52/191 (27%), Positives = 95/191 (49%), Gaps = 1/191 (0%)
 Frame = +1

Query: 208 YIKNFGEDLDDEKLREMFLEFGEITSAKVMIDE-NGKSKGFGFVCFKDSETAESAVKALN 384
           Y+ +  +D+++  L + F   G + S +V  D    +S G+ +V F+    AE A+  +N
Sbjct: 5   YVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDTMN 64

Query: 385 GKMFKDRQLYVGRAQKKNERLDELRSHFEKQRAERSSRYTQGVNLYVKNLDDSIDDSRLK 564
             + +++ + +  +Q+                 + S R +   N+++KNLD +ID+  + 
Sbjct: 65  FDLVRNKPIRIMWSQR-----------------DPSLRRSGVGNVFIKNLDRAIDNKAIY 107

Query: 565 QEFVVFGNITSAKVMTDSNNRSKGFGFVCFSNPEEATKAVTEMNGKICGSKPLYVALAQR 744
             F  FGNI S KV TD    SKG+GFV F   E A  ++ ++NG +   K +YV     
Sbjct: 108 DTFSAFGNILSCKVATDEKGNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIP 167

Query: 745 KEDRKAHLASQ 777
           +++R+  L  +
Sbjct: 168 RKEREKELGEK 178

>sp|Q9EPH8|PABP1_RAT Polyadenylate-binding protein 1 (Poly(A)-binding protein 1) (PABP
           1)
          Length = 636

 Score =  328 bits (842), Expect = 2e-89
 Identities = 176/277 (63%), Positives = 211/277 (76%), Gaps = 2/277 (0%)
 Frame = +1

Query: 1   NILSCKIAADERSKSKGYGFVHFETEAAATNAIDAINGMLIKNKKVFVGRFIPRTSR-AN 177
           NILSCK+  DE   SKGYGFVHFET+ AA  AI+ +NGML+ ++KVFVGRF  R  R A 
Sbjct: 124 NILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAE 182

Query: 178 SDSDVK-FTNCYIKNFGEDLDDEKLREMFLEFGEITSAKVMIDENGKSKGFGFVCFKDSE 354
             +  K FTN YIKNFGED+DDE+L+E+F +FG   S KVM DE+GKSKGFGFV F+  E
Sbjct: 183 LGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHE 242

Query: 355 TAESAVKALNGKMFKDRQLYVGRAQKKNERLDELRSHFEKQRAERSSRYTQGVNLYVKNL 534
            A+ AV  +NGK    +Q+YVGRAQKK ER  EL+  FE+ + +R +RY QGVNLYVKNL
Sbjct: 243 DAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRY-QGVNLYVKNL 301

Query: 535 DDSIDDSRLKQEFVVFGNITSAKVMTDSNNRSKGFGFVCFSNPEEATKAVTEMNGKICGS 714
           DD IDD RL++EF  FG ITSAKVM +   RSKGFGFVCFS+PEEATKAVTEMNG+I  +
Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360

Query: 715 KPLYVALAQRKEDRKAHLASQYMQRVNPHRSSYPNQV 825
           KPLYVALAQRKE+R+AHL +QYMQR+   R + PN V
Sbjct: 361 KPLYVALAQRKEERQAHLTNQYMQRMASVR-AVPNPV 396


 Score =  178 bits (451), Expect = 4e-44
 Identities = 106/262 (40%), Positives = 151/262 (57%), Gaps = 1/262 (0%)
 Frame = +1

Query: 4   ILSCKIAADERSK-SKGYGFVHFETEAAATNAIDAINGMLIKNKKVFVGRFIPRTSRANS 180
           ILS ++  D  ++ S GY +V+F+  A A  A+D +N  +IK K V     I  + R  S
Sbjct: 37  ILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVR----IMWSQRDPS 92

Query: 181 DSDVKFTNCYIKNFGEDLDDEKLREMFLEFGEITSAKVMIDENGKSKGFGFVCFKDSETA 360
                  N +IKN  + +D++ L + F  FG I S KV+ DENG SKG+GFV F+  E A
Sbjct: 93  LRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAA 151

Query: 361 ESAVKALNGKMFKDRQLYVGRAQKKNERLDELRSHFEKQRAERSSRYTQGVNLYVKNLDD 540
           E A++ +NG +  DR+++VGR + + ER            AE  +R  +  N+Y+KN  +
Sbjct: 152 ERAIEKMNGMLLNDRKVFVGRFKSRKER-----------EAELGARAKEFTNVYIKNFGE 200

Query: 541 SIDDSRLKQEFVVFGNITSAKVMTDSNNRSKGFGFVCFSNPEEATKAVTEMNGKICGSKP 720
            +DD RLK+ F  FG   S KVMTD + +SKGFGFV F   E+A KAV EMNGK    K 
Sbjct: 201 DMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQ 260

Query: 721 LYVALAQRKEDRKAHLASQYMQ 786
           +YV  AQ+K +R+  L  ++ Q
Sbjct: 261 IYVGRAQKKVERQTELKRKFEQ 282


 Score = 90.9 bits (224), Expect = 8e-18
 Identities = 59/203 (29%), Positives = 102/203 (50%), Gaps = 1/203 (0%)
 Frame = +1

Query: 208 YIKNFGEDLDDEKLREMFLEFGEITSAKVMIDE-NGKSKGFGFVCFKDSETAESAVKALN 384
           Y+ +   D+ +  L E F   G I S +V  D    +S G+ +V F+    AE A+  +N
Sbjct: 14  YVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMN 73

Query: 385 GKMFKDRQLYVGRAQKKNERLDELRSHFEKQRAERSSRYTQGVNLYVKNLDDSIDDSRLK 564
             + K + + +  +Q+                 + S R +   N+++KNLD SID+  L 
Sbjct: 74  FDVIKGKPVRIMWSQR-----------------DPSLRKSGVGNIFIKNLDKSIDNKALY 116

Query: 565 QEFVVFGNITSAKVMTDSNNRSKGFGFVCFSNPEEATKAVTEMNGKICGSKPLYVALAQR 744
             F  FGNI S KV+ D N  SKG+GFV F   E A +A+ +MNG +   + ++V   + 
Sbjct: 117 DTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 175

Query: 745 KEDRKAHLASQYMQRVNPHRSSY 813
           +++R+A L ++  +  N +  ++
Sbjct: 176 RKEREAELGARAKEFTNVYIKNF 198


 Score = 32.0 bits (71), Expect = 4.6
 Identities = 16/20 (80%), Positives = 16/20 (80%)
 Frame = +2

Query: 1397 EPLTISTLASAPIAEQKQML 1456
            EPLT S LASAP  EQKQML
Sbjct: 543  EPLTASMLASAPPQEQKQML 562

>sp|P11940|PABP1_HUMAN Polyadenylate-binding protein 1 (Poly(A)-binding protein 1) (PABP
           1)
 sp|P61286|PABP1_BOVIN Polyadenylate-binding protein 1 (Poly(A)-binding protein 1) (PABP
           1)
          Length = 636

 Score =  327 bits (839), Expect = 4e-89
 Identities = 175/277 (63%), Positives = 211/277 (76%), Gaps = 2/277 (0%)
 Frame = +1

Query: 1   NILSCKIAADERSKSKGYGFVHFETEAAATNAIDAINGMLIKNKKVFVGRFIPRTSR-AN 177
           NILSCK+  DE   SKGYGFVHFET+ AA  AI+ +NGML+ ++KVFVGRF  R  R A 
Sbjct: 124 NILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAE 182

Query: 178 SDSDVK-FTNCYIKNFGEDLDDEKLREMFLEFGEITSAKVMIDENGKSKGFGFVCFKDSE 354
             +  K FTN YIKNFGED+DDE+L+++F +FG   S KVM DE+GKSKGFGFV F+  E
Sbjct: 183 LGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHE 242

Query: 355 TAESAVKALNGKMFKDRQLYVGRAQKKNERLDELRSHFEKQRAERSSRYTQGVNLYVKNL 534
            A+ AV  +NGK    +Q+YVGRAQKK ER  EL+  FE+ + +R +RY QGVNLYVKNL
Sbjct: 243 DAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRY-QGVNLYVKNL 301

Query: 535 DDSIDDSRLKQEFVVFGNITSAKVMTDSNNRSKGFGFVCFSNPEEATKAVTEMNGKICGS 714
           DD IDD RL++EF  FG ITSAKVM +   RSKGFGFVCFS+PEEATKAVTEMNG+I  +
Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360

Query: 715 KPLYVALAQRKEDRKAHLASQYMQRVNPHRSSYPNQV 825
           KPLYVALAQRKE+R+AHL +QYMQR+   R + PN V
Sbjct: 361 KPLYVALAQRKEERQAHLTNQYMQRMASVR-AVPNPV 396


 Score =  177 bits (449), Expect = 7e-44
 Identities = 106/262 (40%), Positives = 150/262 (57%), Gaps = 1/262 (0%)
 Frame = +1

Query: 4   ILSCKIAADERSK-SKGYGFVHFETEAAATNAIDAINGMLIKNKKVFVGRFIPRTSRANS 180
           ILS ++  D  ++ S GY +V+F+  A A  A+D +N  +IK K V     I  + R  S
Sbjct: 37  ILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVR----IMWSQRDPS 92

Query: 181 DSDVKFTNCYIKNFGEDLDDEKLREMFLEFGEITSAKVMIDENGKSKGFGFVCFKDSETA 360
                  N +IKN  + +D++ L + F  FG I S KV+ DENG SKG+GFV F+  E A
Sbjct: 93  LRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAA 151

Query: 361 ESAVKALNGKMFKDRQLYVGRAQKKNERLDELRSHFEKQRAERSSRYTQGVNLYVKNLDD 540
           E A++ +NG +  DR+++VGR + + ER            AE  +R  +  N+Y+KN  +
Sbjct: 152 ERAIEKMNGMLLNDRKVFVGRFKSRKER-----------EAELGARAKEFTNVYIKNFGE 200

Query: 541 SIDDSRLKQEFVVFGNITSAKVMTDSNNRSKGFGFVCFSNPEEATKAVTEMNGKICGSKP 720
            +DD RLK  F  FG   S KVMTD + +SKGFGFV F   E+A KAV EMNGK    K 
Sbjct: 201 DMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQ 260

Query: 721 LYVALAQRKEDRKAHLASQYMQ 786
           +YV  AQ+K +R+  L  ++ Q
Sbjct: 261 IYVGRAQKKVERQTELKRKFEQ 282


 Score = 90.9 bits (224), Expect = 8e-18
 Identities = 59/203 (29%), Positives = 102/203 (50%), Gaps = 1/203 (0%)
 Frame = +1

Query: 208 YIKNFGEDLDDEKLREMFLEFGEITSAKVMIDE-NGKSKGFGFVCFKDSETAESAVKALN 384
           Y+ +   D+ +  L E F   G I S +V  D    +S G+ +V F+    AE A+  +N
Sbjct: 14  YVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMN 73

Query: 385 GKMFKDRQLYVGRAQKKNERLDELRSHFEKQRAERSSRYTQGVNLYVKNLDDSIDDSRLK 564
             + K + + +  +Q+                 + S R +   N+++KNLD SID+  L 
Sbjct: 74  FDVIKGKPVRIMWSQR-----------------DPSLRKSGVGNIFIKNLDKSIDNKALY 116

Query: 565 QEFVVFGNITSAKVMTDSNNRSKGFGFVCFSNPEEATKAVTEMNGKICGSKPLYVALAQR 744
             F  FGNI S KV+ D N  SKG+GFV F   E A +A+ +MNG +   + ++V   + 
Sbjct: 117 DTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 175

Query: 745 KEDRKAHLASQYMQRVNPHRSSY 813
           +++R+A L ++  +  N +  ++
Sbjct: 176 RKEREAELGARAKEFTNVYIKNF 198


 Score = 32.0 bits (71), Expect = 4.6
 Identities = 16/20 (80%), Positives = 16/20 (80%)
 Frame = +2

Query: 1397 EPLTISTLASAPIAEQKQML 1456
            EPLT S LASAP  EQKQML
Sbjct: 543  EPLTASMLASAPPQEQKQML 562

>sp|P29341|PABP1_MOUSE Polyadenylate-binding protein 1 (Poly(A)-binding protein 1) (PABP
           1)
          Length = 636

 Score =  327 bits (838), Expect = 5e-89
 Identities = 175/277 (63%), Positives = 211/277 (76%), Gaps = 2/277 (0%)
 Frame = +1

Query: 1   NILSCKIAADERSKSKGYGFVHFETEAAATNAIDAINGMLIKNKKVFVGRFIPRTSR-AN 177
           NILSCK+  DE   SKGYGFVHFET+ AA  AI+ +NGML+ ++KVFVGRF  +  R A 
Sbjct: 124 NILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSQKEREAE 182

Query: 178 SDSDVK-FTNCYIKNFGEDLDDEKLREMFLEFGEITSAKVMIDENGKSKGFGFVCFKDSE 354
             +  K FTN YIKNFGED+DDE+L+E+F +FG   S KVM DE+GKSKGFGFV F+  E
Sbjct: 183 LGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHE 242

Query: 355 TAESAVKALNGKMFKDRQLYVGRAQKKNERLDELRSHFEKQRAERSSRYTQGVNLYVKNL 534
            A+ AV  +NGK    +Q+YVGRAQKK ER  EL+  FE+ + +R +RY QGVNLYVKNL
Sbjct: 243 DAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRY-QGVNLYVKNL 301

Query: 535 DDSIDDSRLKQEFVVFGNITSAKVMTDSNNRSKGFGFVCFSNPEEATKAVTEMNGKICGS 714
           DD IDD RL++EF  FG ITSAKVM +   RSKGFGFVCFS+PEEATKAVTEMNG+I  +
Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360

Query: 715 KPLYVALAQRKEDRKAHLASQYMQRVNPHRSSYPNQV 825
           KPLYVALAQRKE+R+AHL +QYMQR+   R + PN V
Sbjct: 361 KPLYVALAQRKEERQAHLTNQYMQRMASVR-AVPNPV 396


 Score =  177 bits (450), Expect = 5e-44
 Identities = 106/262 (40%), Positives = 151/262 (57%), Gaps = 1/262 (0%)
 Frame = +1

Query: 4   ILSCKIAADERSK-SKGYGFVHFETEAAATNAIDAINGMLIKNKKVFVGRFIPRTSRANS 180
           ILS ++  D  ++ S GY +V+F+  A A  A+D +N  +IK K V     I  + R  S
Sbjct: 37  ILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVR----IMWSQRDPS 92

Query: 181 DSDVKFTNCYIKNFGEDLDDEKLREMFLEFGEITSAKVMIDENGKSKGFGFVCFKDSETA 360
                  N +IKN  + +D++ L + F  FG I S KV+ DENG SKG+GFV F+  E A
Sbjct: 93  LRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAA 151

Query: 361 ESAVKALNGKMFKDRQLYVGRAQKKNERLDELRSHFEKQRAERSSRYTQGVNLYVKNLDD 540
           E A++ +NG +  DR+++VGR + + ER            AE  +R  +  N+Y+KN  +
Sbjct: 152 ERAIEKMNGMLLNDRKVFVGRFKSQKER-----------EAELGARAKEFTNVYIKNFGE 200

Query: 541 SIDDSRLKQEFVVFGNITSAKVMTDSNNRSKGFGFVCFSNPEEATKAVTEMNGKICGSKP 720
            +DD RLK+ F  FG   S KVMTD + +SKGFGFV F   E+A KAV EMNGK    K 
Sbjct: 201 DMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQ 260

Query: 721 LYVALAQRKEDRKAHLASQYMQ 786
           +YV  AQ+K +R+  L  ++ Q
Sbjct: 261 IYVGRAQKKVERQTELKRKFEQ 282


 Score = 90.5 bits (223), Expect = 1e-17
 Identities = 59/203 (29%), Positives = 102/203 (50%), Gaps = 1/203 (0%)
 Frame = +1

Query: 208 YIKNFGEDLDDEKLREMFLEFGEITSAKVMIDE-NGKSKGFGFVCFKDSETAESAVKALN 384
           Y+ +   D+ +  L E F   G I S +V  D    +S G+ +V F+    AE A+  +N
Sbjct: 14  YVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMN 73

Query: 385 GKMFKDRQLYVGRAQKKNERLDELRSHFEKQRAERSSRYTQGVNLYVKNLDDSIDDSRLK 564
             + K + + +  +Q+                 + S R +   N+++KNLD SID+  L 
Sbjct: 74  FDVIKGKPVRIMWSQR-----------------DPSLRKSGVGNIFIKNLDKSIDNKALY 116

Query: 565 QEFVVFGNITSAKVMTDSNNRSKGFGFVCFSNPEEATKAVTEMNGKICGSKPLYVALAQR 744
             F  FGNI S KV+ D N  SKG+GFV F   E A +A+ +MNG +   + ++V   + 
Sbjct: 117 DTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 175

Query: 745 KEDRKAHLASQYMQRVNPHRSSY 813
           +++R+A L ++  +  N +  ++
Sbjct: 176 QKEREAELGARAKEFTNVYIKNF 198


 Score = 32.0 bits (71), Expect = 4.6
 Identities = 16/20 (80%), Positives = 16/20 (80%)
 Frame = +2

Query: 1397 EPLTISTLASAPIAEQKQML 1456
            EPLT S LASAP  EQKQML
Sbjct: 543  EPLTASMLASAPPQEQKQML 562

>sp|Q13310|PABP4_HUMAN Polyadenylate-binding protein 4 (Poly(A)-binding protein 4) (PABP
           4) (Inducible poly(A)-binding protein) (iPABP)
           (Activated-platelet protein 1) (APP-1)
          Length = 644

 Score =  326 bits (835), Expect = 1e-88
 Identities = 173/277 (62%), Positives = 211/277 (76%), Gaps = 2/277 (0%)
 Frame = +1

Query: 1   NILSCKIAADERSKSKGYGFVHFETEAAATNAIDAINGMLIKNKKVFVGRFIPRTSR-AN 177
           NILSCK+  DE   SKGY FVHFET+ AA  AI+ +NGML+ ++KVFVGRF  R  R A 
Sbjct: 124 NILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAE 182

Query: 178 SDSDVK-FTNCYIKNFGEDLDDEKLREMFLEFGEITSAKVMIDENGKSKGFGFVCFKDSE 354
             +  K FTN YIKNFGE++DDE L+E+F +FG+  S KVM D NGKSKGFGFV ++  E
Sbjct: 183 LGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHE 242

Query: 355 TAESAVKALNGKMFKDRQLYVGRAQKKNERLDELRSHFEKQRAERSSRYTQGVNLYVKNL 534
            A  AV+ +NGK    + ++VGRAQKK ER  EL+  FE+ + ER SRY QGVNLY+KNL
Sbjct: 243 DANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRY-QGVNLYIKNL 301

Query: 535 DDSIDDSRLKQEFVVFGNITSAKVMTDSNNRSKGFGFVCFSNPEEATKAVTEMNGKICGS 714
           DD+IDD +L++EF  FG+ITSAKVM + + RSKGFGFVCFS+PEEATKAVTEMNG+I GS
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360

Query: 715 KPLYVALAQRKEDRKAHLASQYMQRVNPHRSSYPNQV 825
           KPLYVALAQRKE+RKAHL +QYMQRV   R+   N +
Sbjct: 361 KPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAI 397


 Score =  171 bits (433), Expect = 5e-42
 Identities = 101/271 (37%), Positives = 151/271 (55%), Gaps = 1/271 (0%)
 Frame = +1

Query: 4   ILSCKIAADERSK-SKGYGFVHFETEAAATNAIDAINGMLIKNKKVFVGRFIPRTSRANS 180
           +LS ++  D  ++ S GY +V+F+  A A  A+D +N  +IK K +     I  + R  S
Sbjct: 37  VLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPI----RIMWSQRDPS 92

Query: 181 DSDVKFTNCYIKNFGEDLDDEKLREMFLEFGEITSAKVMIDENGKSKGFGFVCFKDSETA 360
                  N +IKN  + +D++ L + F  FG I S KV+ DENG SKG+ FV F+  E A
Sbjct: 93  LRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAA 151

Query: 361 ESAVKALNGKMFKDRQLYVGRAQKKNERLDELRSHFEKQRAERSSRYTQGVNLYVKNLDD 540
           + A++ +NG +  DR+++VGR + + ER            AE  ++  +  N+Y+KN  +
Sbjct: 152 DKAIEKMNGMLLNDRKVFVGRFKSRKER-----------EAELGAKAKEFTNVYIKNFGE 200

Query: 541 SIDDSRLKQEFVVFGNITSAKVMTDSNNRSKGFGFVCFSNPEEATKAVTEMNGKICGSKP 720
            +DD  LK+ F  FG   S KVM D N +SKGFGFV +   E+A KAV EMNGK    K 
Sbjct: 201 EVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKI 260

Query: 721 LYVALAQRKEDRKAHLASQYMQRVNPHRSSY 813
           ++V  AQ+K +R+A L  ++ Q      S Y
Sbjct: 261 IFVGRAQKKVERQAELKRKFEQLKQERISRY 291


 Score = 92.0 bits (227), Expect = 4e-18
 Identities = 60/215 (27%), Positives = 105/215 (48%), Gaps = 1/215 (0%)
 Frame = +1

Query: 184 SDVKFTNCYIKNFGEDLDDEKLREMFLEFGEITSAKVMIDE-NGKSKGFGFVCFKDSETA 360
           S     + Y+ +   D+ +  L E F   G + S +V  D    +S G+ +V F+    A
Sbjct: 6   SSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADA 65

Query: 361 ESAVKALNGKMFKDRQLYVGRAQKKNERLDELRSHFEKQRAERSSRYTQGVNLYVKNLDD 540
           E A+  +N  + K + + +  +Q+                 + S R +   N+++KNLD 
Sbjct: 66  ERALDTMNFDVIKGKPIRIMWSQR-----------------DPSLRKSGVGNVFIKNLDK 108

Query: 541 SIDDSRLKQEFVVFGNITSAKVMTDSNNRSKGFGFVCFSNPEEATKAVTEMNGKICGSKP 720
           SID+  L   F  FGNI S KV+ D N  SKG+ FV F   E A KA+ +MNG +   + 
Sbjct: 109 SIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRK 167

Query: 721 LYVALAQRKEDRKAHLASQYMQRVNPHRSSYPNQV 825
           ++V   + +++R+A L ++  +  N +  ++  +V
Sbjct: 168 VFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEV 202

>sp|P20965|PABP1_XENLA Polyadenylate-binding protein 1 (Poly(A)-binding protein 1) (PABP
           1)
          Length = 633

 Score =  320 bits (821), Expect = 5e-87
 Identities = 170/274 (62%), Positives = 206/274 (75%), Gaps = 2/274 (0%)
 Frame = +1

Query: 1   NILSCKIAADERSKSKGYGFVHFETEAAATNAIDAINGMLIKNKKVFVGRFIPRTSR-AN 177
           NILSCK+  DE   SKGYGFVHFET+ AA  AID +NGML+ ++KVFVGRF  R  R A 
Sbjct: 124 NILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAE 182

Query: 178 SDSDVK-FTNCYIKNFGEDLDDEKLREMFLEFGEITSAKVMIDENGKSKGFGFVCFKDSE 354
             +  K FTN YIKNFG+D++DE+L+EMF ++G   S KVM D+NGKSKGFGFV F+  E
Sbjct: 183 LGARAKEFTNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDDNGKSKGFGFVSFERHE 242

Query: 355 TAESAVKALNGKMFKDRQLYVGRAQKKNERLDELRSHFEKQRAERSSRYTQGVNLYVKNL 534
            A+ AV  + GK    + ++VGRAQKK ER  EL+  FE+   +R +RY QGVNLYVKNL
Sbjct: 243 DAQKAVDEMYGKDMNGKSMFVGRAQKKVERQTELKRKFEQMNQDRITRY-QGVNLYVKNL 301

Query: 535 DDSIDDSRLKQEFVVFGNITSAKVMTDSNNRSKGFGFVCFSNPEEATKAVTEMNGKICGS 714
           DD IDD RL++EF+ FG ITSAKVM +   RSKGFGFVCFS+PEEATKAVTEMNG+I  +
Sbjct: 302 DDGIDDERLRKEFLPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360

Query: 715 KPLYVALAQRKEDRKAHLASQYMQRVNPHRSSYP 816
           KPLYVALAQRKE+R+AHL +QYMQR+   R   P
Sbjct: 361 KPLYVALAQRKEERQAHLTNQYMQRMASVRVPNP 394


 Score =  172 bits (436), Expect = 2e-42
 Identities = 103/262 (39%), Positives = 149/262 (56%), Gaps = 1/262 (0%)
 Frame = +1

Query: 4   ILSCKIAADERSK-SKGYGFVHFETEAAATNAIDAINGMLIKNKKVFVGRFIPRTSRANS 180
           ILS ++  D  ++ S GY +V+F+  A A  A+D +N  +IK + V     I  + R  S
Sbjct: 37  ILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGRPVR----IMWSQRDPS 92

Query: 181 DSDVKFTNCYIKNFGEDLDDEKLREMFLEFGEITSAKVMIDENGKSKGFGFVCFKDSETA 360
                  N +IKN  + +D++ L + F  FG I S KV+ DENG SKG+GFV F+  E A
Sbjct: 93  LRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAA 151

Query: 361 ESAVKALNGKMFKDRQLYVGRAQKKNERLDELRSHFEKQRAERSSRYTQGVNLYVKNLDD 540
           E A+  +NG +  DR+++VGR + + ER            AE  +R  +  N+Y+KN  D
Sbjct: 152 ERAIDKMNGMLLNDRKVFVGRFKSRKER-----------EAELGARAKEFTNVYIKNFGD 200

Query: 541 SIDDSRLKQEFVVFGNITSAKVMTDSNNRSKGFGFVCFSNPEEATKAVTEMNGKICGSKP 720
            ++D RLK+ F  +G   S KVMTD N +SKGFGFV F   E+A KAV EM GK    K 
Sbjct: 201 DMNDERLKEMFGKYGPALSVKVMTDDNGKSKGFGFVSFERHEDAQKAVDEMYGKDMNGKS 260

Query: 721 LYVALAQRKEDRKAHLASQYMQ 786
           ++V  AQ+K +R+  L  ++ Q
Sbjct: 261 MFVGRAQKKVERQTELKRKFEQ 282


 Score = 93.6 bits (231), Expect = 1e-18
 Identities = 60/208 (28%), Positives = 106/208 (50%), Gaps = 1/208 (0%)
 Frame = +1

Query: 208 YIKNFGEDLDDEKLREMFLEFGEITSAKVMIDE-NGKSKGFGFVCFKDSETAESAVKALN 384
           Y+ +  +D+ +  L E F   G I S +V  D    +S G+ +V F+    AE A+  +N
Sbjct: 14  YVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMN 73

Query: 385 GKMFKDRQLYVGRAQKKNERLDELRSHFEKQRAERSSRYTQGVNLYVKNLDDSIDDSRLK 564
             + K R + +  +Q+                 + S R +   N+++KNLD SID+  L 
Sbjct: 74  FDVIKGRPVRIMWSQR-----------------DPSLRKSGVGNIFIKNLDKSIDNKALY 116

Query: 565 QEFVVFGNITSAKVMTDSNNRSKGFGFVCFSNPEEATKAVTEMNGKICGSKPLYVALAQR 744
             F  FGNI S KV+ D N  SKG+GFV F   E A +A+ +MNG +   + ++V   + 
Sbjct: 117 DTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKS 175

Query: 745 KEDRKAHLASQYMQRVNPHRSSYPNQVS 828
           +++R+A L ++  +  N +  ++ + ++
Sbjct: 176 RKEREAELGARAKEFTNVYIKNFGDDMN 203

>sp|Q9H361|PABP3_HUMAN Polyadenylate-binding protein 3 (Poly(A)-binding protein 3) (PABP
           3) (Testis-specific poly(A)-binding protein)
          Length = 631

 Score =  310 bits (795), Expect = 5e-84
 Identities = 168/276 (60%), Positives = 204/276 (73%), Gaps = 2/276 (0%)
 Frame = +1

Query: 1   NILSCKIAADERSKSKGYGFVHFETEAAATNAIDAINGMLIKNKKVFVGRFIPRTSR-AN 177
           NILSC +  DE   SKGYGFVHFET  AA  AI  +NGML+  +KVFVG+F  R  R A 
Sbjct: 124 NILSCNVVCDENG-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAE 182

Query: 178 SDSDVK-FTNCYIKNFGEDLDDEKLREMFLEFGEITSAKVMIDENGKSKGFGFVCFKDSE 354
             +  K F N YIKNFGED+DDE+L+++F +FG   S KVM DE+GKSKGFGFV F+  E
Sbjct: 183 LGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHE 242

Query: 355 TAESAVKALNGKMFKDRQLYVGRAQKKNERLDELRSHFEKQRAERSSRYTQGVNLYVKNL 534
            A+ AV  +NGK    +Q+YVGRAQKK ER  EL+  FE+ + +R +RY Q VNLYVKNL
Sbjct: 243 DAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRY-QVVNLYVKNL 301

Query: 535 DDSIDDSRLKQEFVVFGNITSAKVMTDSNNRSKGFGFVCFSNPEEATKAVTEMNGKICGS 714
           DD IDD RL++ F  FG ITSAKVM +   RSKGFGFVCFS+PEEATKAVTEMNG+I  +
Sbjct: 302 DDGIDDERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360

Query: 715 KPLYVALAQRKEDRKAHLASQYMQRVNPHRSSYPNQ 822
           KPLYVALAQRKE+R+A+L ++YMQR+   R + PNQ
Sbjct: 361 KPLYVALAQRKEERQAYLTNEYMQRMASVR-AVPNQ 395


 Score =  162 bits (411), Expect = 2e-39
 Identities = 101/262 (38%), Positives = 144/262 (54%), Gaps = 1/262 (0%)
 Frame = +1

Query: 4   ILSCKIAADE-RSKSKGYGFVHFETEAAATNAIDAINGMLIKNKKVFVGRFIPRTSRANS 180
           ILS +I  D   S S  Y +V+F+    A +A+D +N  +IK K V     I  + R  S
Sbjct: 37  ILSIRICRDLITSGSSNYAYVNFQHTKDAEHALDTMNFDVIKGKPVR----IMWSQRDPS 92

Query: 181 DSDVKFTNCYIKNFGEDLDDEKLREMFLEFGEITSAKVMIDENGKSKGFGFVCFKDSETA 360
                  N ++KN  + ++++ L +    FG I S  V+ DENG SKG+GFV F+  E A
Sbjct: 93  LRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENG-SKGYGFVHFETHEAA 151

Query: 361 ESAVKALNGKMFKDRQLYVGRAQKKNERLDELRSHFEKQRAERSSRYTQGVNLYVKNLDD 540
           E A+K +NG +   R+++VG+ + + ER            AE  +R  +  N+Y+KN  +
Sbjct: 152 ERAIKKMNGMLLNGRKVFVGQFKSRKER-----------EAELGARAKEFPNVYIKNFGE 200

Query: 541 SIDDSRLKQEFVVFGNITSAKVMTDSNNRSKGFGFVCFSNPEEATKAVTEMNGKICGSKP 720
            +DD RLK  F  FG   S KVMTD + +SKGFGFV F   E+A KAV EMNGK    K 
Sbjct: 201 DMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQ 260

Query: 721 LYVALAQRKEDRKAHLASQYMQ 786
           +YV  AQ+K +R+  L   + Q
Sbjct: 261 IYVGRAQKKVERQTELKRTFEQ 282


 Score = 81.6 bits (200), Expect = 5e-15
 Identities = 55/203 (27%), Positives = 100/203 (49%), Gaps = 1/203 (0%)
 Frame = +1

Query: 208 YIKNFGEDLDDEKLREMFLEFGEITSAKVMIDE-NGKSKGFGFVCFKDSETAESAVKALN 384
           Y+ +   D+ +  L E F   G I S ++  D     S  + +V F+ ++ AE A+  +N
Sbjct: 14  YVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALDTMN 73

Query: 385 GKMFKDRQLYVGRAQKKNERLDELRSHFEKQRAERSSRYTQGVNLYVKNLDDSIDDSRLK 564
             + K + + +  +Q+                 + S R +   N++VKNLD SI++  L 
Sbjct: 74  FDVIKGKPVRIMWSQR-----------------DPSLRKSGVGNIFVKNLDKSINNKALY 116

Query: 565 QEFVVFGNITSAKVMTDSNNRSKGFGFVCFSNPEEATKAVTEMNGKICGSKPLYVALAQR 744
                FGNI S  V+ D N  SKG+GFV F   E A +A+ +MNG +   + ++V   + 
Sbjct: 117 DTVSAFGNILSCNVVCDENG-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKS 175

Query: 745 KEDRKAHLASQYMQRVNPHRSSY 813
           +++R+A L ++  +  N +  ++
Sbjct: 176 RKEREAELGARAKEFPNVYIKNF 198

>sp|O64380|PABP3_ARATH Polyadenylate-binding protein 3 (Poly(A)-binding protein 3) (PABP
           3)
          Length = 660

 Score =  284 bits (726), Expect = 5e-76
 Identities = 144/263 (54%), Positives = 195/263 (74%), Gaps = 2/263 (0%)
 Frame = +1

Query: 4   ILSCKIAADERSKSKGYGFVHFETEAAATNAIDAINGMLIKNKKVFVGRFIPRTSRANSD 183
           ILSCK+A D   +SKGYGFV FE E +A  AID +NGML+ +K+VFVG FI R  RA  +
Sbjct: 162 ILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIRRQERARDE 221

Query: 184 SDV--KFTNCYIKNFGEDLDDEKLREMFLEFGEITSAKVMIDENGKSKGFGFVCFKDSET 357
           +    +FTN Y+KN  +++ +++LR+ F +FG I+SA VM D++G S+ FGFV F+ +E 
Sbjct: 222 NTPTPRFTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEA 281

Query: 358 AESAVKALNGKMFKDRQLYVGRAQKKNERLDELRSHFEKQRAERSSRYTQGVNLYVKNLD 537
           A SAV+ +NG    D  LYVGRAQKK+ER +ELR  FE++R  R  + +QG NLY+KNLD
Sbjct: 282 AASAVEKMNGISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEK-SQGANLYLKNLD 340

Query: 538 DSIDDSRLKQEFVVFGNITSAKVMTDSNNRSKGFGFVCFSNPEEATKAVTEMNGKICGSK 717
           DS+DD +LK+ F  +GN+TS+KVM +    S+GFGFV +SNPEEA +A++EMNGK+ G K
Sbjct: 341 DSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALRALSEMNGKMIGRK 400

Query: 718 PLYVALAQRKEDRKAHLASQYMQ 786
           PLY+ALAQRKEDR+AHL + + Q
Sbjct: 401 PLYIALAQRKEDRRAHLQALFSQ 423


 Score =  155 bits (392), Expect = 3e-37
 Identities = 94/274 (34%), Positives = 148/274 (54%), Gaps = 4/274 (1%)
 Frame = +1

Query: 1   NILSCKIAADERSKSKGYGFVHFETEAAATNAIDAINGMLIKNKKVFVGRFIPRTSRANS 180
           N++S ++  D+  +S GY +++F     A  A++A+N   + ++ +       R   +N 
Sbjct: 74  NVVSVRVCRDQNRRSLGYAYINFSNPNDAYRAMEALNYTPLFDRPI-------RIMLSNR 126

Query: 181 DSDVKFT---NCYIKNFGEDLDDEKLREMFLEFGEITSAKVMIDENGKSKGFGFVCFKDS 351
           D   + +   N +IKN    +D++ L E F  FG I S KV +D  G+SKG+GFV F+  
Sbjct: 127 DPSTRLSGKGNIFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKE 186

Query: 352 ETAESAVKALNGKMFKDRQLYVGRAQKKNERLDELRSHFEKQRAERSSRYTQGVNLYVKN 531
           E+A++A+  LNG +  D+Q++VG   ++ ER         +     + R+T   N+YVKN
Sbjct: 187 ESAQAAIDKLNGMLMNDKQVFVGHFIRRQER--------ARDENTPTPRFT---NVYVKN 235

Query: 532 LDDSIDDSRLKQEFVVFGNITSAKVMTDSNNRSKGFGFVCFSNPEEATKAVTEMNGKICG 711
           L   I +  L++ F  FG I+SA VM D +  S+ FGFV F   E A  AV +MNG   G
Sbjct: 236 LPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKMNGISLG 295

Query: 712 SKPLYVALAQRKEDRKAHLASQYMQ-RVNPHRSS 810
              LYV  AQ+K +R+  L  ++ Q R+N    S
Sbjct: 296 DDVLYVGRAQKKSEREEELRRKFEQERINRFEKS 329


 Score =  117 bits (294), Expect = 6e-26
 Identities = 62/172 (36%), Positives = 100/172 (58%), Gaps = 12/172 (6%)
 Frame = +1

Query: 4   ILSCKIAADERSKSKGYGFVHFETEAAATNAIDAINGMLIKNKKVFVGRFIPRTSRA--- 174
           I S  +  D+   S+ +GFV+FE   AA +A++ +NG+ + +  ++VGR   ++ R    
Sbjct: 255 ISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKMNGISLGDDVLYVGRAQKKSEREEEL 314

Query: 175 ---------NSDSDVKFTNCYIKNFGEDLDDEKLREMFLEFGEITSAKVMIDENGKSKGF 327
                    N     +  N Y+KN  + +DDEKL+EMF E+G +TS+KVM++  G S+GF
Sbjct: 315 RRKFEQERINRFEKSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGF 374

Query: 328 GFVCFKDSETAESAVKALNGKMFKDRQLYVGRAQKKNERLDELRSHFEKQRA 483
           GFV + + E A  A+  +NGKM   + LY+  AQ+K +R   L++ F + RA
Sbjct: 375 GFVAYSNPEEALRALSEMNGKMIGRKPLYIALAQRKEDRRAHLQALFSQIRA 426


 Score = 90.1 bits (222), Expect = 1e-17
 Identities = 55/209 (26%), Positives = 100/209 (47%)
 Frame = +1

Query: 199 TNCYIKNFGEDLDDEKLREMFLEFGEITSAKVMIDENGKSKGFGFVCFKDSETAESAVKA 378
           ++ Y  +    + +  L ++F     + S +V  D+N +S G+ ++ F +   A  A++A
Sbjct: 49  SSLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNRRSLGYAYINFSNPNDAYRAMEA 108

Query: 379 LNGKMFKDRQLYVGRAQKKNERLDELRSHFEKQRAERSSRYTQGVNLYVKNLDDSIDDSR 558
           LN     DR + +  + +                 + S+R +   N+++KNLD SID+  
Sbjct: 109 LNYTPLFDRPIRIMLSNR-----------------DPSTRLSGKGNIFIKNLDASIDNKA 151

Query: 559 LKQEFVVFGNITSAKVMTDSNNRSKGFGFVCFSNPEEATKAVTEMNGKICGSKPLYVALA 738
           L + F  FG I S KV  D   RSKG+GFV F   E A  A+ ++NG +   K ++V   
Sbjct: 152 LFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHF 211

Query: 739 QRKEDRKAHLASQYMQRVNPHRSSYPNQV 825
            R+++R     +   +  N +  + P ++
Sbjct: 212 IRRQERARDENTPTPRFTNVYVKNLPKEI 240


 Score = 35.8 bits (81), Expect = 0.32
 Identities = 14/48 (29%), Positives = 27/48 (56%)
 Frame = +1

Query: 1   NILSCKIAADERSKSKGYGFVHFETEAAATNAIDAINGMLIKNKKVFV 144
           N+ S K+  + +  S+G+GFV +     A  A+  +NG +I  K +++
Sbjct: 357 NVTSSKVMLNPQGMSRGFGFVAYSNPEEALRALSEMNGKMIGRKPLYI 404

>sp|P31209|PABP_SCHPO Polyadenylate-binding protein (Poly(A)-binding protein) (PABP)
          Length = 653

 Score =  283 bits (725), Expect = 7e-76
 Identities = 139/264 (52%), Positives = 190/264 (71%), Gaps = 2/264 (0%)
 Frame = +1

Query: 4   ILSCKIAADERSKSKGYGFVHFETEAAATNAIDAINGMLIKNKKVFVGRFIPRTSRANSD 183
           ILSCK+A DE   +KGYGFVHF++  +A  AI+ +NGML+ +KKV+VG  + R  R +  
Sbjct: 194 ILSCKVAVDELGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYVGHHVSRRERQSKV 253

Query: 184 SDVK--FTNCYIKNFGEDLDDEKLREMFLEFGEITSAKVMIDENGKSKGFGFVCFKDSET 357
             +K  FTN YIKN   ++ +++  ++F +FGEITS  ++ D+N K +GFGFV + + E 
Sbjct: 254 EALKANFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHEC 313

Query: 358 AESAVKALNGKMFKDRQLYVGRAQKKNERLDELRSHFEKQRAERSSRYTQGVNLYVKNLD 537
           A+ AV  LN K +K ++LYVGRAQKK+ER +ELR  +E+ + E+ ++Y QGVNL++KNL 
Sbjct: 314 AQKAVDELNDKEYKGKKLYVGRAQKKHEREEELRKRYEQMKLEKMNKY-QGVNLFIKNLQ 372

Query: 538 DSIDDSRLKQEFVVFGNITSAKVMTDSNNRSKGFGFVCFSNPEEATKAVTEMNGKICGSK 717
           D +DD RLK EF  FG ITSAK+MTD   +SKGFGFVC++ PEEA KAVTEMN ++   K
Sbjct: 373 DEVDDERLKAEFSAFGTITSAKIMTDEQGKSKGFGFVCYTTPEEANKAVTEMNQRMLAGK 432

Query: 718 PLYVALAQRKEDRKAHLASQYMQR 789
           PLYVALAQRKE R++ L +Q   R
Sbjct: 433 PLYVALAQRKEVRRSQLEAQIQAR 456


 Score =  150 bits (380), Expect = 7e-36
 Identities = 93/265 (35%), Positives = 141/265 (53%), Gaps = 3/265 (1%)
 Frame = +1

Query: 1   NILSCKIAADERSKSKGYGFVHFETEAAATNAIDAINGMLIKNKKVFVGRFIPRTSRANS 180
           +I  C+ A   RS   GY +V+F        A+D +N  LIK +       I  + R  S
Sbjct: 108 SIRVCRDAVTRRSL--GYAYVNFHNMEDGEKALDELNYTLIKGRPCR----IMWSQRDPS 161

Query: 181 DSDVKFTNCYIKNFGEDLDDEKLREMFLEFGEITSAKVMIDENGKSKGFGFVCFKDSETA 360
              +   N +IKN    +D++ L + F  FG+I S KV +DE G +KG+GFV F   E+A
Sbjct: 162 LRKMGTGNVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDELGNAKGYGFVHFDSVESA 221

Query: 361 ESAVKALNGKMFKDRQLYVGRAQKKNER---LDELRSHFEKQRAERSSRYTQGVNLYVKN 531
            +A++ +NG +  D+++YVG    + ER   ++ L+++F               N+Y+KN
Sbjct: 222 NAAIEHVNGMLLNDKKVYVGHHVSRRERQSKVEALKANF--------------TNVYIKN 267

Query: 532 LDDSIDDSRLKQEFVVFGNITSAKVMTDSNNRSKGFGFVCFSNPEEATKAVTEMNGKICG 711
           LD  I +      F  FG ITS  ++ D N++ +GFGFV ++N E A KAV E+N K   
Sbjct: 268 LDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDELNDKEYK 327

Query: 712 SKPLYVALAQRKEDRKAHLASQYMQ 786
            K LYV  AQ+K +R+  L  +Y Q
Sbjct: 328 GKKLYVGRAQKKHEREEELRKRYEQ 352


 Score =  117 bits (293), Expect = 8e-26
 Identities = 63/174 (36%), Positives = 92/174 (52%), Gaps = 12/174 (6%)
 Frame = +1

Query: 4   ILSCKIAADERSKSKGYGFVHFETEAAATNAIDAINGMLIKNKKVFVGRFIPRTSRANS- 180
           I S  +  D+  K +G+GFV++     A  A+D +N    K KK++VGR   +  R    
Sbjct: 287 ITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDELNDKEYKGKKLYVGRAQKKHEREEEL 346

Query: 181 -----------DSDVKFTNCYIKNFGEDLDDEKLREMFLEFGEITSAKVMIDENGKSKGF 327
                       +  +  N +IKN  +++DDE+L+  F  FG ITSAK+M DE GKSKGF
Sbjct: 347 RKRYEQMKLEKMNKYQGVNLFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQGKSKGF 406

Query: 328 GFVCFKDSETAESAVKALNGKMFKDRQLYVGRAQKKNERLDELRSHFEKQRAER 489
           GFVC+   E A  AV  +N +M   + LYV  AQ+K  R  +L +  + +   R
Sbjct: 407 GFVCYTTPEEANKAVTEMNQRMLAGKPLYVALAQRKEVRRSQLEAQIQARNQFR 460

>sp|P04147|PABP_YEAST Polyadenylate-binding protein, cytoplasmic and nuclear
           (Poly(A)-binding protein) (PABP) (ARS consensus binding
           protein ACBP-67) (Polyadenylate tail-binding protein)
          Length = 577

 Score =  280 bits (716), Expect = 7e-75
 Identities = 142/265 (53%), Positives = 185/265 (69%), Gaps = 2/265 (0%)
 Frame = +1

Query: 1   NILSCKIAADERSKSKGYGFVHFETEAAATNAIDAINGMLIKNKKVFVGRFIPRTSRANS 180
           +ILS KIA DE  KSKG+GFVHFE E AA  AIDA+NGML+  ++++V   + R  R + 
Sbjct: 151 DILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAPHLSRKERDSQ 210

Query: 181 DSDVK--FTNCYIKNFGEDLDDEKLREMFLEFGEITSAKVMIDENGKSKGFGFVCFKDSE 354
             + K  +TN Y+KN   +  DE+ +E+F +FG I SA +  D +GK KGFGFV ++  E
Sbjct: 211 LEETKAHYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHE 270

Query: 355 TAESAVKALNGKMFKDRQLYVGRAQKKNERLDELRSHFEKQRAERSSRYTQGVNLYVKNL 534
            A  AV+ALN       +LYVGRAQKKNER+  L+  +E  R E+ ++Y QGVNL+VKNL
Sbjct: 271 DAVKAVEALNDSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKY-QGVNLFVKNL 329

Query: 535 DDSIDDSRLKQEFVVFGNITSAKVMTDSNNRSKGFGFVCFSNPEEATKAVTEMNGKICGS 714
           DDS+DD +L++EF  +G ITSAKVM   N +SKGFGFVCFS PEEATKA+TE N +I   
Sbjct: 330 DDSVDDEKLEEEFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAG 389

Query: 715 KPLYVALAQRKEDRKAHLASQYMQR 789
           KPLYVA+AQRK+ R++ LA Q   R
Sbjct: 390 KPLYVAIAQRKDVRRSQLAQQIQAR 414


 Score =  151 bits (382), Expect = 4e-36
 Identities = 92/263 (34%), Positives = 140/263 (53%), Gaps = 3/263 (1%)
 Frame = +1

Query: 1   NILSCKIAADERSK-SKGYGFVHFETEAAATNAIDAINGMLIKNK--KVFVGRFIPRTSR 171
           ++ S ++  D  +K S GY +V+F    A   AI+ +N   IK +  ++   +  P   +
Sbjct: 63  SVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAIEQLNYTPIKGRLCRIMWSQRDPSLRK 122

Query: 172 ANSDSDVKFTNCYIKNFGEDLDDEKLREMFLEFGEITSAKVMIDENGKSKGFGFVCFKDS 351
             S       N +IKN   D+D++ L + F  FG+I S+K+  DENGKSKGFGFV F++ 
Sbjct: 123 KGSG------NIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEE 176

Query: 352 ETAESAVKALNGKMFKDRQLYVGRAQKKNERLDELRSHFEKQRAERSSRYTQGVNLYVKN 531
             A+ A+ ALNG +   +++YV     + ER        + Q  E  + YT   NLYVKN
Sbjct: 177 GAAKEAIDALNGMLLNGQEIYVAPHLSRKER--------DSQLEETKAHYT---NLYVKN 225

Query: 532 LDDSIDDSRLKQEFVVFGNITSAKVMTDSNNRSKGFGFVCFSNPEEATKAVTEMNGKICG 711
           ++    D + ++ F  FG I SA +  D++ + KGFGFV +   E+A KAV  +N     
Sbjct: 226 INSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALNDSELN 285

Query: 712 SKPLYVALAQRKEDRKAHLASQY 780
            + LYV  AQ+K +R   L  QY
Sbjct: 286 GEKLYVGRAQKKNERMHVLKKQY 308


 Score =  115 bits (289), Expect = 2e-25
 Identities = 67/180 (37%), Positives = 96/180 (53%), Gaps = 12/180 (6%)
 Frame = +1

Query: 4   ILSCKIAADERSKSKGYGFVHFETEAAATNAIDAINGMLIKNKKVFVGRFIPRTSRANS- 180
           I+S  +  D   K KG+GFV++E    A  A++A+N   +  +K++VGR   +  R +  
Sbjct: 245 IVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQKKNERMHVL 304

Query: 181 ---------DSDVKF--TNCYIKNFGEDLDDEKLREMFLEFGEITSAKVMIDENGKSKGF 327
                    +   K+   N ++KN  + +DDEKL E F  +G ITSAKVM  ENGKSKGF
Sbjct: 305 KKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTENGKSKGF 364

Query: 328 GFVCFKDSETAESAVKALNGKMFKDRQLYVGRAQKKNERLDELRSHFEKQRAERSSRYTQ 507
           GFVCF   E A  A+   N ++   + LYV  AQ+K+ R  +L    +   A    RY Q
Sbjct: 365 GFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKDVRRSQLAQQIQ---ARNQMRYQQ 421

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 157,685,376
Number of Sequences: 369166
Number of extensions: 3179573
Number of successful extensions: 9887
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 8293
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9358
length of database: 68,354,980
effective HSP length: 115
effective length of database: 47,110,455
effective search space used: 17430868350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00695

  1. Dr_sW_018_C15
  2. Dr_sW_017_H02