Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_017_H02
(856 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q13310|PABP4_HUMAN Polyadenylate-binding protein 4 (Poly... 107 3e-23
sp|P29341|PABP1_MOUSE Polyadenylate-binding protein 1 (Poly... 105 2e-22
sp|P11940|PABP1_HUMAN Polyadenylate-binding protein 1 (Poly... 105 2e-22
sp|P20965|PABP1_XENLA Polyadenylate-binding protein 1 (Poly... 104 4e-22
sp|Q9EPH8|PABP1_RAT Polyadenylate-binding protein 1 (Poly(A... 104 4e-22
sp|P21187|PABP_DROME Polyadenylate-binding protein (Poly(A)... 100 4e-21
sp|Q9H361|PABP3_HUMAN Polyadenylate-binding protein 3 (Poly... 98 3e-20
sp|P04147|PABP_YEAST Polyadenylate-binding protein, cytopla... 86 2e-16
sp|O64380|PABP3_ARATH Polyadenylate-binding protein 3 (Poly... 84 5e-16
sp|Q05196|PABP5_ARATH Polyadenylate-binding protein 5 (Poly... 84 7e-16
>sp|Q13310|PABP4_HUMAN Polyadenylate-binding protein 4 (Poly(A)-binding protein 4) (PABP
4) (Inducible poly(A)-binding protein) (iPABP)
(Activated-platelet protein 1) (APP-1)
Length = 644
Score = 107 bits (268), Expect = 3e-23
Identities = 65/132 (49%), Positives = 73/132 (55%), Gaps = 1/132 (0%)
Frame = +3
Query: 18 NNRSKGFGFVCFSNPEEATKAVTEMNGKICGSKPLYVALAQRKEDRKAHLASQYMQRVNP 197
+ RSKGFGFVCFS+PEEATKAVTEMNG+I GSKPLYVALAQRKE+RKAHL +QYMQRV
Sbjct: 329 DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAG 388
Query: 198 HRSSYPNQVSVNTXXXXXXXXXXXXXXYAFAPNASTPRVYT-QSAAFMPPQNRWSNRMHP 374
R+ + N A P YT A M P RW P
Sbjct: 389 MRA-----LPANAILNQFQPAAGGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQQGGRP 443
Query: 375 SQLQFNGGNMRQ 410
Q +RQ
Sbjct: 444 QGFQGMPSAIRQ 455
Score = 62.4 bits (150), Expect = 2e-09
Identities = 32/70 (45%), Positives = 42/70 (60%)
Frame = +3
Query: 3 VMTDSNNRSKGFGFVCFSNPEEATKAVTEMNGKICGSKPLYVALAQRKEDRKAHLASQYM 182
VM D N +SKGFGFV + E+A KAV EMNGK K ++V AQ+K +R+A L ++
Sbjct: 222 VMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFE 281
Query: 183 QRVNPHRSSY 212
Q S Y
Sbjct: 282 QLKQERISRY 291
Score = 44.3 bits (103), Expect = 4e-04
Identities = 20/68 (29%), Positives = 39/68 (57%)
Frame = +3
Query: 21 NRSKGFGFVCFSNPEEATKAVTEMNGKICGSKPLYVALAQRKEDRKAHLASQYMQRVNPH 200
N SKG+ FV F E A KA+ +MNG + + ++V + +++R+A L ++ + N +
Sbjct: 135 NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVY 194
Query: 201 RSSYPNQV 224
++ +V
Sbjct: 195 IKNFGEEV 202
Score = 30.8 bits (68), Expect = 5.0
Identities = 15/20 (75%), Positives = 16/20 (80%)
Frame = +3
Query: 795 EPLTISTLASAPIAEQKQML 854
EPLT S LA+AP EQKQML
Sbjct: 552 EPLTASMLAAAPPQEQKQML 571
>sp|P29341|PABP1_MOUSE Polyadenylate-binding protein 1 (Poly(A)-binding protein 1) (PABP 1)
Length = 636
Score = 105 bits (261), Expect = 2e-22
Identities = 102/288 (35%), Positives = 130/288 (45%), Gaps = 11/288 (3%)
Frame = +3
Query: 24 RSKGFGFVCFSNPEEATKAVTEMNGKICGSKPLYVALAQRKEDRKAHLASQYMQRVNPHR 203
RSKGFGFVCFS+PEEATKAVTEMNG+I +KPLYVALAQRKE+R+AHL +QYMQR+ R
Sbjct: 331 RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVR 390
Query: 204 SSYPNQVSVNTXXXXXXXXXXXXXXYAFAP-----NASTPRVYTQSAAFMPPQNRWSNRM 368
+ PN V Y AP A+ P+ ++A + P Q
Sbjct: 391 -AVPNPV---------------INPYQPAPPSGYFMAAIPQTQNRAAYYPPSQ------- 427
Query: 369 HPSQLQFNGGNMRQLANAH-FGNMEGSSVPIQN----NTMGMQTNQIRQVSMMPNQRPXX 533
+QL+ + Q A H F NM G+ P +TM ++Q+ +V M QR
Sbjct: 428 -IAQLRPSPRWTAQGARPHPFQNMPGAIRPAAPRPPFSTMRPASSQVPRV--MSTQRVAN 484
Query: 534 XXXXXXXXXXXXXXGVAN-TVKSVPQNSRPITGVQMPITSQAXXXXXXXXXXXXXXXXXX 710
A V++VPQ + GV+ P
Sbjct: 485 TSTQTMGPRPAAAAAAATPAVRTVPQ-YKYAAGVRNP----------------------- 520
Query: 711 XXXXXXXXXXXXNRPINNVSNQLVSGNLEPLTISTLASAPIAEQKQML 854
+P +V Q EPLT S LASAP EQKQML
Sbjct: 521 QQHLNAQPQVTMQQPAVHVQGQ------EPLTASMLASAPPQEQKQML 562
Score = 63.9 bits (154), Expect = 5e-10
Identities = 31/61 (50%), Positives = 40/61 (65%)
Frame = +3
Query: 3 VMTDSNNRSKGFGFVCFSNPEEATKAVTEMNGKICGSKPLYVALAQRKEDRKAHLASQYM 182
VMTD + +SKGFGFV F E+A KAV EMNGK K +YV AQ+K +R+ L ++
Sbjct: 222 VMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFE 281
Query: 183 Q 185
Q
Sbjct: 282 Q 282
Score = 43.5 bits (101), Expect = 7e-04
Identities = 19/64 (29%), Positives = 38/64 (59%)
Frame = +3
Query: 21 NRSKGFGFVCFSNPEEATKAVTEMNGKICGSKPLYVALAQRKEDRKAHLASQYMQRVNPH 200
N SKG+GFV F E A +A+ +MNG + + ++V + +++R+A L ++ + N +
Sbjct: 135 NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSQKEREAELGARAKEFTNVY 194
Query: 201 RSSY 212
++
Sbjct: 195 IKNF 198
>sp|P11940|PABP1_HUMAN Polyadenylate-binding protein 1 (Poly(A)-binding protein 1) (PABP 1)
sp|P61286|PABP1_BOVIN Polyadenylate-binding protein 1 (Poly(A)-binding protein 1) (PABP 1)
Length = 636
Score = 105 bits (261), Expect = 2e-22
Identities = 102/288 (35%), Positives = 130/288 (45%), Gaps = 11/288 (3%)
Frame = +3
Query: 24 RSKGFGFVCFSNPEEATKAVTEMNGKICGSKPLYVALAQRKEDRKAHLASQYMQRVNPHR 203
RSKGFGFVCFS+PEEATKAVTEMNG+I +KPLYVALAQRKE+R+AHL +QYMQR+ R
Sbjct: 331 RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVR 390
Query: 204 SSYPNQVSVNTXXXXXXXXXXXXXXYAFAP-----NASTPRVYTQSAAFMPPQNRWSNRM 368
+ PN V Y AP A+ P+ ++A + P Q
Sbjct: 391 -AVPNPV---------------INPYQPAPPSGYFMAAIPQTQNRAAYYPPSQ------- 427
Query: 369 HPSQLQFNGGNMRQLANAH-FGNMEGSSVPIQN----NTMGMQTNQIRQVSMMPNQRPXX 533
+QL+ + Q A H F NM G+ P +TM ++Q+ +V M QR
Sbjct: 428 -IAQLRPSPRWTAQGARPHPFQNMPGAIRPAAPRPPFSTMRPASSQVPRV--MSTQRVAN 484
Query: 534 XXXXXXXXXXXXXXGVAN-TVKSVPQNSRPITGVQMPITSQAXXXXXXXXXXXXXXXXXX 710
A V++VPQ + GV+ P
Sbjct: 485 TSTQTMGPRPAAAAAAATPAVRTVPQ-YKYAAGVRNP----------------------- 520
Query: 711 XXXXXXXXXXXXNRPINNVSNQLVSGNLEPLTISTLASAPIAEQKQML 854
+P +V Q EPLT S LASAP EQKQML
Sbjct: 521 QQHLNAQPQVTMQQPAVHVQGQ------EPLTASMLASAPPQEQKQML 562
Score = 63.9 bits (154), Expect = 5e-10
Identities = 31/61 (50%), Positives = 40/61 (65%)
Frame = +3
Query: 3 VMTDSNNRSKGFGFVCFSNPEEATKAVTEMNGKICGSKPLYVALAQRKEDRKAHLASQYM 182
VMTD + +SKGFGFV F E+A KAV EMNGK K +YV AQ+K +R+ L ++
Sbjct: 222 VMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFE 281
Query: 183 Q 185
Q
Sbjct: 282 Q 282
Score = 43.9 bits (102), Expect = 6e-04
Identities = 19/64 (29%), Positives = 38/64 (59%)
Frame = +3
Query: 21 NRSKGFGFVCFSNPEEATKAVTEMNGKICGSKPLYVALAQRKEDRKAHLASQYMQRVNPH 200
N SKG+GFV F E A +A+ +MNG + + ++V + +++R+A L ++ + N +
Sbjct: 135 NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVY 194
Query: 201 RSSY 212
++
Sbjct: 195 IKNF 198
>sp|P20965|PABP1_XENLA Polyadenylate-binding protein 1 (Poly(A)-binding protein 1) (PABP 1)
Length = 633
Score = 104 bits (259), Expect = 4e-22
Identities = 103/289 (35%), Positives = 130/289 (44%), Gaps = 12/289 (4%)
Frame = +3
Query: 24 RSKGFGFVCFSNPEEATKAVTEMNGKICGSKPLYVALAQRKEDRKAHLASQYMQRVNPHR 203
RSKGFGFVCFS+PEEATKAVTEMNG+I +KPLYVALAQRKE+R+AHL +QYMQR+ R
Sbjct: 331 RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVR 390
Query: 204 SSYPNQVSVNTXXXXXXXXXXXXXXYAFAPNASTPRVYTQSAAFMPPQNRWSNRMHP--- 374
PN V P P Y AA P QNR + +P
Sbjct: 391 --VPNPV--------------------INPYQPPPSSYFM-AAIPPAQNRAA--YYPPGQ 425
Query: 375 -SQLQFNGGNMRQLANAH-FGNMEGSSVPIQN-----NTMGMQTNQIRQVSMMPNQRPXX 533
+QL+ + Q A H F NM G+ P +TM +NQ+ +V M +
Sbjct: 426 IAQLRPSPRWTAQGARPHPFQNMPGAIRPTAPRPPTFSTMRPASNQVPRV-MSAQRVANT 484
Query: 534 XXXXXXXXXXXXXXGVANTVKSVPQNSRPITGV--QMPITSQAXXXXXXXXXXXXXXXXX 707
A+ V++VPQ + GV Q + +Q
Sbjct: 485 STQTMGPRPTTAAAAAASAVRAVPQ-YKYAAGVRNQQHLNTQ------------------ 525
Query: 708 XXXXXXXXXXXXXNRPINNVSNQLVSGNLEPLTISTLASAPIAEQKQML 854
+P +V Q EPLT S LA+AP EQKQML
Sbjct: 526 --------PQVAMQQPAVHVQGQ------EPLTASMLAAAPPQEQKQML 560
Score = 61.2 bits (147), Expect = 3e-09
Identities = 30/61 (49%), Positives = 39/61 (63%)
Frame = +3
Query: 3 VMTDSNNRSKGFGFVCFSNPEEATKAVTEMNGKICGSKPLYVALAQRKEDRKAHLASQYM 182
VMTD N +SKGFGFV F E+A KAV EM GK K ++V AQ+K +R+ L ++
Sbjct: 222 VMTDDNGKSKGFGFVSFERHEDAQKAVDEMYGKDMNGKSMFVGRAQKKVERQTELKRKFE 281
Query: 183 Q 185
Q
Sbjct: 282 Q 282
Score = 44.3 bits (103), Expect = 4e-04
Identities = 19/69 (27%), Positives = 41/69 (59%)
Frame = +3
Query: 21 NRSKGFGFVCFSNPEEATKAVTEMNGKICGSKPLYVALAQRKEDRKAHLASQYMQRVNPH 200
N SKG+GFV F E A +A+ +MNG + + ++V + +++R+A L ++ + N +
Sbjct: 135 NGSKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVY 194
Query: 201 RSSYPNQVS 227
++ + ++
Sbjct: 195 IKNFGDDMN 203
>sp|Q9EPH8|PABP1_RAT Polyadenylate-binding protein 1 (Poly(A)-binding protein 1) (PABP 1)
Length = 636
Score = 104 bits (259), Expect = 4e-22
Identities = 102/288 (35%), Positives = 130/288 (45%), Gaps = 11/288 (3%)
Frame = +3
Query: 24 RSKGFGFVCFSNPEEATKAVTEMNGKICGSKPLYVALAQRKEDRKAHLASQYMQRVNPHR 203
RSKGFGFVCFS+PEEATKAVTEMNG+I +KPLYVALAQRKE+R+AHL +QYMQR+ R
Sbjct: 331 RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVR 390
Query: 204 SSYPNQVSVNTXXXXXXXXXXXXXXYAFAP-----NASTPRVYTQSAAFMPPQNRWSNRM 368
+ PN V Y AP A+ P+ ++A + P Q
Sbjct: 391 -AVPNPV---------------INPYQPAPPSGYFMAAIPQTQNRAAYYPPSQ------- 427
Query: 369 HPSQLQFNGGNMRQLANAH-FGNMEGSSVPIQN----NTMGMQTNQIRQVSMMPNQRPXX 533
+QL+ + Q A H F NM G+ P +TM ++Q+ +V M QR
Sbjct: 428 -IAQLRPSPRWTAQGARPHPFQNMPGAIRPAAPRPPFSTMRPASSQVPRV--MSTQRVAN 484
Query: 534 XXXXXXXXXXXXXXGVAN-TVKSVPQNSRPITGVQMPITSQAXXXXXXXXXXXXXXXXXX 710
A V++VPQ + GV+ P
Sbjct: 485 TSTQTMGPRPAAAATAATPAVRTVPQ-YKYAAGVRNP----------------------- 520
Query: 711 XXXXXXXXXXXXNRPINNVSNQLVSGNLEPLTISTLASAPIAEQKQML 854
+P +V Q EPLT S LASAP EQKQML
Sbjct: 521 QQHLNAQPQVTMQQPAVHVQGQ------EPLTASMLASAPPQEQKQML 562
Score = 63.9 bits (154), Expect = 5e-10
Identities = 31/61 (50%), Positives = 40/61 (65%)
Frame = +3
Query: 3 VMTDSNNRSKGFGFVCFSNPEEATKAVTEMNGKICGSKPLYVALAQRKEDRKAHLASQYM 182
VMTD + +SKGFGFV F E+A KAV EMNGK K +YV AQ+K +R+ L ++
Sbjct: 222 VMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFE 281
Query: 183 Q 185
Q
Sbjct: 282 Q 282
Score = 43.9 bits (102), Expect = 6e-04
Identities = 19/64 (29%), Positives = 38/64 (59%)
Frame = +3
Query: 21 NRSKGFGFVCFSNPEEATKAVTEMNGKICGSKPLYVALAQRKEDRKAHLASQYMQRVNPH 200
N SKG+GFV F E A +A+ +MNG + + ++V + +++R+A L ++ + N +
Sbjct: 135 NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVY 194
Query: 201 RSSY 212
++
Sbjct: 195 IKNF 198
>sp|P21187|PABP_DROME Polyadenylate-binding protein (Poly(A)-binding protein) (PABP)
Length = 634
Score = 100 bits (250), Expect = 4e-21
Identities = 49/74 (66%), Positives = 57/74 (77%)
Frame = +3
Query: 3 VMTDSNNRSKGFGFVCFSNPEEATKAVTEMNGKICGSKPLYVALAQRKEDRKAHLASQYM 182
VMTD RSKGFGFVCF+ EAT AVTE+NG++ GSKPLYVALAQRKE+RKAHLASQYM
Sbjct: 318 VMTDEEGRSKGFGFVCFNAASEATCAVTELNGRVVGSKPLYVALAQRKEERKAHLASQYM 377
Query: 183 QRVNPHRSSYPNQV 224
+ + R Q+
Sbjct: 378 RHMTGMRMQQLGQI 391
Score = 52.4 bits (124), Expect = 2e-06
Identities = 28/60 (46%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Frame = +3
Query: 3 VMTDSNNRSKGFGFVCFSNPEEATKAVTEMNGKICG-SKPLYVALAQRKEDRKAHLASQY 179
VM+ + +SKGFGFV F E A AV +NGK G K LYVA AQ+K +R+ L ++
Sbjct: 214 VMSKEDGKSKGFGFVAFETTEAAEAAVQALNGKDMGEGKSLYVARAQKKAERQQELKRKF 273
Score = 41.6 bits (96), Expect = 0.003
Identities = 19/58 (32%), Positives = 31/58 (53%)
Frame = +3
Query: 3 VMTDSNNRSKGFGFVCFSNPEEATKAVTEMNGKICGSKPLYVALAQRKEDRKAHLASQ 176
V TD SKG+GFV F E A ++ ++NG + K +YV +++R+ L +
Sbjct: 121 VATDEKGNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEREKELGEK 178
>sp|Q9H361|PABP3_HUMAN Polyadenylate-binding protein 3 (Poly(A)-binding protein 3) (PABP
3) (Testis-specific poly(A)-binding protein)
Length = 631
Score = 97.8 bits (242), Expect = 3e-20
Identities = 48/66 (72%), Positives = 58/66 (87%)
Frame = +3
Query: 24 RSKGFGFVCFSNPEEATKAVTEMNGKICGSKPLYVALAQRKEDRKAHLASQYMQRVNPHR 203
RSKGFGFVCFS+PEEATKAVTEMNG+I +KPLYVALAQRKE+R+A+L ++YMQR+ R
Sbjct: 331 RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAYLTNEYMQRMASVR 390
Query: 204 SSYPNQ 221
+ PNQ
Sbjct: 391 -AVPNQ 395
Score = 63.2 bits (152), Expect = 9e-10
Identities = 31/61 (50%), Positives = 39/61 (63%)
Frame = +3
Query: 3 VMTDSNNRSKGFGFVCFSNPEEATKAVTEMNGKICGSKPLYVALAQRKEDRKAHLASQYM 182
VMTD + +SKGFGFV F E+A KAV EMNGK K +YV AQ+K +R+ L +
Sbjct: 222 VMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFE 281
Query: 183 Q 185
Q
Sbjct: 282 Q 282
Score = 42.7 bits (99), Expect = 0.001
Identities = 19/64 (29%), Positives = 38/64 (59%)
Frame = +3
Query: 21 NRSKGFGFVCFSNPEEATKAVTEMNGKICGSKPLYVALAQRKEDRKAHLASQYMQRVNPH 200
N SKG+GFV F E A +A+ +MNG + + ++V + +++R+A L ++ + N +
Sbjct: 135 NGSKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAELGARAKEFPNVY 194
Query: 201 RSSY 212
++
Sbjct: 195 IKNF 198
>sp|P04147|PABP_YEAST Polyadenylate-binding protein, cytoplasmic and nuclear
(Poly(A)-binding protein) (PABP) (ARS consensus binding
protein ACBP-67) (Polyadenylate tail-binding protein)
Length = 577
Score = 85.5 bits (210), Expect = 2e-16
Identities = 59/153 (38%), Positives = 74/153 (48%)
Frame = +3
Query: 3 VMTDSNNRSKGFGFVCFSNPEEATKAVTEMNGKICGSKPLYVALAQRKEDRKAHLASQYM 182
VM N +SKGFGFVCFS PEEATKA+TE N +I KPLYVA+AQRK+ R++ LA Q
Sbjct: 353 VMRTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKDVRRSQLAQQIQ 412
Query: 183 QRVNPHRSSYPNQVSVNTXXXXXXXXXXXXXXYAFAPNASTPRVYTQSAAFMPPQNRWSN 362
R NQ+ Y A A+ FMPP +
Sbjct: 413 AR---------NQM-----------------RYQQATAAAAAAAAGMPGQFMPPM--FYG 444
Query: 363 RMHPSQLQFNGGNMRQLANAHFGNMEGSSVPIQ 461
M P + FNG N +Q+ G M + +P Q
Sbjct: 445 VMPPRGVPFNGPNPQQM--NPMGGMPKNGMPPQ 475
Score = 49.3 bits (116), Expect = 1e-05
Identities = 25/71 (35%), Positives = 42/71 (59%), Gaps = 7/71 (9%)
Frame = +3
Query: 3 VMTDSNNRSKGFGFVCFSNPEEATKAVTEMNGKICGSKPLYVA--LAQRK-----EDRKA 161
+ TD N +SKGFGFV F A +A+ +NG + + +YVA L++++ E+ KA
Sbjct: 157 IATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAPHLSRKERDSQLEETKA 216
Query: 162 HLASQYMQRVN 194
H + Y++ +N
Sbjct: 217 HYTNLYVKNIN 227
Score = 46.6 bits (109), Expect = 9e-05
Identities = 23/56 (41%), Positives = 32/56 (57%)
Frame = +3
Query: 12 DSNNRSKGFGFVCFSNPEEATKAVTEMNGKICGSKPLYVALAQRKEDRKAHLASQY 179
D++ + KGFGFV + E+A KAV +N + LYV AQ+K +R L QY
Sbjct: 253 DADGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQKKNERMHVLKKQY 308
>sp|O64380|PABP3_ARATH Polyadenylate-binding protein 3 (Poly(A)-binding protein 3) (PABP
3)
Length = 660
Score = 84.0 bits (206), Expect = 5e-16
Identities = 38/61 (62%), Positives = 49/61 (80%)
Frame = +3
Query: 3 VMTDSNNRSKGFGFVCFSNPEEATKAVTEMNGKICGSKPLYVALAQRKEDRKAHLASQYM 182
VM + S+GFGFV +SNPEEA +A++EMNGK+ G KPLY+ALAQRKEDR+AHL + +
Sbjct: 363 VMLNPQGMSRGFGFVAYSNPEEALRALSEMNGKMIGRKPLYIALAQRKEDRRAHLQALFS 422
Query: 183 Q 185
Q
Sbjct: 423 Q 423
Score = 49.7 bits (117), Expect = 1e-05
Identities = 29/70 (41%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Frame = +3
Query: 3 VMTDSNNRSKGFGFVCFSNPEEATKAVTEMNGKICGSKPLYVALAQRKEDRKAHLASQYM 182
VM D + S+ FGFV F E A AV +MNG G LYV AQ+K +R+ L ++
Sbjct: 260 VMRDQSGNSRCFGFVNFECTEAAASAVEKMNGISLGDDVLYVGRAQKKSEREEELRRKFE 319
Query: 183 Q-RVNPHRSS 209
Q R+N S
Sbjct: 320 QERINRFEKS 329
Score = 41.6 bits (96), Expect = 0.003
Identities = 21/74 (28%), Positives = 37/74 (50%)
Frame = +3
Query: 3 VMTDSNNRSKGFGFVCFSNPEEATKAVTEMNGKICGSKPLYVALAQRKEDRKAHLASQYM 182
V D RSKG+GFV F E A A+ ++NG + K ++V R+++R +
Sbjct: 167 VAMDVTGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIRRQERARDENTPTP 226
Query: 183 QRVNPHRSSYPNQV 224
+ N + + P ++
Sbjct: 227 RFTNVYVKNLPKEI 240
Score = 36.6 bits (83), Expect = 0.091
Identities = 16/47 (34%), Positives = 27/47 (57%)
Frame = +3
Query: 3 VMTDSNNRSKGFGFVCFSNPEEATKAVTEMNGKICGSKPLYVALAQR 143
V D N RS G+ ++ FSNP +A +A+ +N +P+ + L+ R
Sbjct: 80 VCRDQNRRSLGYAYINFSNPNDAYRAMEALNYTPLFDRPIRIMLSNR 126
>sp|Q05196|PABP5_ARATH Polyadenylate-binding protein 5 (Poly(A)-binding protein 5) (PABP
5)
Length = 668
Score = 83.6 bits (205), Expect = 7e-16
Identities = 41/65 (63%), Positives = 50/65 (76%)
Frame = +3
Query: 3 VMTDSNNRSKGFGFVCFSNPEEATKAVTEMNGKICGSKPLYVALAQRKEDRKAHLASQYM 182
VM +S S+GFGFV +SNPEEA A+ EMNGK+ G KPLYVALAQRKE+R+AHL S +
Sbjct: 359 VMMNSQGLSRGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYVALAQRKEERQAHLQSLFT 418
Query: 183 QRVNP 197
Q +P
Sbjct: 419 QIRSP 423
Score = 54.3 bits (129), Expect = 4e-07
Identities = 28/61 (45%), Positives = 36/61 (59%)
Frame = +3
Query: 3 VMTDSNNRSKGFGFVCFSNPEEATKAVTEMNGKICGSKPLYVALAQRKEDRKAHLASQYM 182
VM D + S+ FGFV F +PE A AV +MNG G LYV AQ+K DR+ L ++
Sbjct: 256 VMKDQSGNSRSFGFVNFVSPEAAAVAVEKMNGISLGEDVLYVGRAQKKSDREEELRRKFE 315
Query: 183 Q 185
Q
Sbjct: 316 Q 316
Score = 43.1 bits (100), Expect = 0.001
Identities = 22/75 (29%), Positives = 37/75 (49%)
Frame = +3
Query: 3 VMTDSNNRSKGFGFVCFSNPEEATKAVTEMNGKICGSKPLYVALAQRKEDRKAHLASQYM 182
V D RSKG+GFV F E A A+ ++NG + K ++V R++DR +
Sbjct: 163 VAMDVVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRRQDRARSESGAVP 222
Query: 183 QRVNPHRSSYPNQVS 227
N + + P +++
Sbjct: 223 SFTNVYVKNLPKEIT 237
Score = 37.0 bits (84), Expect = 0.070
Identities = 16/47 (34%), Positives = 29/47 (61%)
Frame = +3
Query: 3 VMTDSNNRSKGFGFVCFSNPEEATKAVTEMNGKICGSKPLYVALAQR 143
V D +RS G+ +V F+NPE+A++A+ +N +P+ + L+ R
Sbjct: 76 VCRDLTHRSLGYAYVNFANPEDASRAMESLNYAPIRDRPIRIMLSNR 122
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 92,588,648
Number of Sequences: 369166
Number of extensions: 1792155
Number of successful extensions: 4482
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4478
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8438301375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)