Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_018_C15
(943 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P21187|PABP_DROME Polyadenylate-binding protein (Poly(A)... 330 5e-90
sp|Q9EPH8|PABP1_RAT Polyadenylate-binding protein 1 (Poly(A... 328 1e-89
sp|P11940|PABP1_HUMAN Polyadenylate-binding protein 1 (Poly... 327 2e-89
sp|P29341|PABP1_MOUSE Polyadenylate-binding protein 1 (Poly... 327 3e-89
sp|Q13310|PABP4_HUMAN Polyadenylate-binding protein 4 (Poly... 326 7e-89
sp|P20965|PABP1_XENLA Polyadenylate-binding protein 1 (Poly... 320 3e-87
sp|Q9H361|PABP3_HUMAN Polyadenylate-binding protein 3 (Poly... 310 3e-84
sp|O64380|PABP3_ARATH Polyadenylate-binding protein 3 (Poly... 284 3e-76
sp|P31209|PABP_SCHPO Polyadenylate-binding protein (Poly(A)... 283 4e-76
sp|P04147|PABP_YEAST Polyadenylate-binding protein, cytopla... 280 4e-75
>sp|P21187|PABP_DROME Polyadenylate-binding protein (Poly(A)-binding protein) (PABP)
Length = 634
Score = 330 bits (845), Expect = 5e-90
Identities = 172/278 (61%), Positives = 206/278 (74%), Gaps = 3/278 (1%)
Frame = +1
Query: 1 NILSCKIAADERSKSKGYGFVHFETEAAATNAIDAINGMLIKNKKVFVGRFIPRTSRANS 180
NILSCK+A DE+ SKGYGFVHFETE AA +ID +NGML+ KKV+VG+FIPR R
Sbjct: 115 NILSCKVATDEKGNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEREKE 174
Query: 181 --DSDVKFTNCYIKNFGEDLDDEKLREMFLEFGEITSAKVMIDENGKSKGFGFVCFKDSE 354
+ FTN Y+KNF ED DDEKL+E F +G+ITS KVM E+GKSKGFGFV F+ +E
Sbjct: 175 LGEKAKLFTNVYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAFETTE 234
Query: 355 TAESAVKALNGK-MFKDRQLYVGRAQKKNERLDELRSHFEKQRAERSSRYTQGVNLYVKN 531
AE+AV+ALNGK M + + LYV RAQKK ER EL+ FE+ + +R GVNLYVKN
Sbjct: 235 AAEAAVQALNGKDMGEGKSLYVARAQKKAERQQELKRKFEELKQKRHESVF-GVNLYVKN 293
Query: 532 LDDSIDDSRLKQEFVVFGNITSAKVMTDSNNRSKGFGFVCFSNPEEATKAVTEMNGKICG 711
LDD+IDD RL+ F +GNITSAKVMTD RSKGFGFVCF+ EAT AVTE+NG++ G
Sbjct: 294 LDDTIDDDRLRIAFSPYGNITSAKVMTDEEGRSKGFGFVCFNAASEATCAVTELNGRVVG 353
Query: 712 SKPLYVALAQRKEDRKAHLASQYMQRVNPHRSSYPNQV 825
SKPLYVALAQRKE+RKAHLASQYM+ + R Q+
Sbjct: 354 SKPLYVALAQRKEERKAHLASQYMRHMTGMRMQQLGQI 391
Score = 162 bits (410), Expect = 1e-39
Identities = 96/264 (36%), Positives = 149/264 (56%), Gaps = 5/264 (1%)
Frame = +1
Query: 4 ILSCKIAADERSK-SKGYGFVHFETEAAATNAIDAINGMLIKNKKVFVGRFIPRTSRANS 180
+LS ++ D ++ S GY +V+F+ A A A+D +N L++NK + R +
Sbjct: 28 VLSIRVCRDVITRRSLGYAYVNFQQPADAERALDTMNFDLVRNKPI-------RIMWSQR 80
Query: 181 DSDVKFT---NCYIKNFGEDLDDEKLREMFLEFGEITSAKVMIDENGKSKGFGFVCFKDS 351
D ++ + N +IKN +D++ + + F FG I S KV DE G SKG+GFV F+
Sbjct: 81 DPSLRRSGVGNVFIKNLDRAIDNKAIYDTFSAFGNILSCKVATDEKGNSKGYGFVHFETE 140
Query: 352 ETAESAVKALNGKMFKDRQLYVGRAQKKNERLDELRSHFEKQRAERSSRYTQGVNLYVKN 531
E A +++ +NG + +++YVG+ + ER EK+ E++ +T N+YVKN
Sbjct: 141 EAANTSIDKVNGMLLNGKKVYVGKFIPRKER--------EKELGEKAKLFT---NVYVKN 189
Query: 532 LDDSIDDSRLKQEFVVFGNITSAKVMTDSNNRSKGFGFVCFSNPEEATKAVTEMNGKICG 711
+ DD +LK+ F +G ITS KVM+ + +SKGFGFV F E A AV +NGK G
Sbjct: 190 FTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQALNGKDMG 249
Query: 712 -SKPLYVALAQRKEDRKAHLASQY 780
K LYVA AQ+K +R+ L ++
Sbjct: 250 EGKSLYVARAQKKAERQQELKRKF 273
Score = 86.3 bits (212), Expect = 1e-16
Identities = 52/191 (27%), Positives = 95/191 (49%), Gaps = 1/191 (0%)
Frame = +1
Query: 208 YIKNFGEDLDDEKLREMFLEFGEITSAKVMIDE-NGKSKGFGFVCFKDSETAESAVKALN 384
Y+ + +D+++ L + F G + S +V D +S G+ +V F+ AE A+ +N
Sbjct: 5 YVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDTMN 64
Query: 385 GKMFKDRQLYVGRAQKKNERLDELRSHFEKQRAERSSRYTQGVNLYVKNLDDSIDDSRLK 564
+ +++ + + +Q+ + S R + N+++KNLD +ID+ +
Sbjct: 65 FDLVRNKPIRIMWSQR-----------------DPSLRRSGVGNVFIKNLDRAIDNKAIY 107
Query: 565 QEFVVFGNITSAKVMTDSNNRSKGFGFVCFSNPEEATKAVTEMNGKICGSKPLYVALAQR 744
F FGNI S KV TD SKG+GFV F E A ++ ++NG + K +YV
Sbjct: 108 DTFSAFGNILSCKVATDEKGNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIP 167
Query: 745 KEDRKAHLASQ 777
+++R+ L +
Sbjct: 168 RKEREKELGEK 178
>sp|Q9EPH8|PABP1_RAT Polyadenylate-binding protein 1 (Poly(A)-binding protein 1) (PABP
1)
Length = 636
Score = 328 bits (842), Expect = 1e-89
Identities = 176/277 (63%), Positives = 211/277 (76%), Gaps = 2/277 (0%)
Frame = +1
Query: 1 NILSCKIAADERSKSKGYGFVHFETEAAATNAIDAINGMLIKNKKVFVGRFIPRTSR-AN 177
NILSCK+ DE SKGYGFVHFET+ AA AI+ +NGML+ ++KVFVGRF R R A
Sbjct: 124 NILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAE 182
Query: 178 SDSDVK-FTNCYIKNFGEDLDDEKLREMFLEFGEITSAKVMIDENGKSKGFGFVCFKDSE 354
+ K FTN YIKNFGED+DDE+L+E+F +FG S KVM DE+GKSKGFGFV F+ E
Sbjct: 183 LGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHE 242
Query: 355 TAESAVKALNGKMFKDRQLYVGRAQKKNERLDELRSHFEKQRAERSSRYTQGVNLYVKNL 534
A+ AV +NGK +Q+YVGRAQKK ER EL+ FE+ + +R +RY QGVNLYVKNL
Sbjct: 243 DAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRY-QGVNLYVKNL 301
Query: 535 DDSIDDSRLKQEFVVFGNITSAKVMTDSNNRSKGFGFVCFSNPEEATKAVTEMNGKICGS 714
DD IDD RL++EF FG ITSAKVM + RSKGFGFVCFS+PEEATKAVTEMNG+I +
Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 715 KPLYVALAQRKEDRKAHLASQYMQRVNPHRSSYPNQV 825
KPLYVALAQRKE+R+AHL +QYMQR+ R + PN V
Sbjct: 361 KPLYVALAQRKEERQAHLTNQYMQRMASVR-AVPNPV 396
Score = 178 bits (451), Expect = 2e-44
Identities = 106/262 (40%), Positives = 151/262 (57%), Gaps = 1/262 (0%)
Frame = +1
Query: 4 ILSCKIAADERSK-SKGYGFVHFETEAAATNAIDAINGMLIKNKKVFVGRFIPRTSRANS 180
ILS ++ D ++ S GY +V+F+ A A A+D +N +IK K V I + R S
Sbjct: 37 ILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVR----IMWSQRDPS 92
Query: 181 DSDVKFTNCYIKNFGEDLDDEKLREMFLEFGEITSAKVMIDENGKSKGFGFVCFKDSETA 360
N +IKN + +D++ L + F FG I S KV+ DENG SKG+GFV F+ E A
Sbjct: 93 LRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAA 151
Query: 361 ESAVKALNGKMFKDRQLYVGRAQKKNERLDELRSHFEKQRAERSSRYTQGVNLYVKNLDD 540
E A++ +NG + DR+++VGR + + ER AE +R + N+Y+KN +
Sbjct: 152 ERAIEKMNGMLLNDRKVFVGRFKSRKER-----------EAELGARAKEFTNVYIKNFGE 200
Query: 541 SIDDSRLKQEFVVFGNITSAKVMTDSNNRSKGFGFVCFSNPEEATKAVTEMNGKICGSKP 720
+DD RLK+ F FG S KVMTD + +SKGFGFV F E+A KAV EMNGK K
Sbjct: 201 DMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQ 260
Query: 721 LYVALAQRKEDRKAHLASQYMQ 786
+YV AQ+K +R+ L ++ Q
Sbjct: 261 IYVGRAQKKVERQTELKRKFEQ 282
Score = 90.9 bits (224), Expect = 5e-18
Identities = 59/203 (29%), Positives = 102/203 (50%), Gaps = 1/203 (0%)
Frame = +1
Query: 208 YIKNFGEDLDDEKLREMFLEFGEITSAKVMIDE-NGKSKGFGFVCFKDSETAESAVKALN 384
Y+ + D+ + L E F G I S +V D +S G+ +V F+ AE A+ +N
Sbjct: 14 YVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMN 73
Query: 385 GKMFKDRQLYVGRAQKKNERLDELRSHFEKQRAERSSRYTQGVNLYVKNLDDSIDDSRLK 564
+ K + + + +Q+ + S R + N+++KNLD SID+ L
Sbjct: 74 FDVIKGKPVRIMWSQR-----------------DPSLRKSGVGNIFIKNLDKSIDNKALY 116
Query: 565 QEFVVFGNITSAKVMTDSNNRSKGFGFVCFSNPEEATKAVTEMNGKICGSKPLYVALAQR 744
F FGNI S KV+ D N SKG+GFV F E A +A+ +MNG + + ++V +
Sbjct: 117 DTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 175
Query: 745 KEDRKAHLASQYMQRVNPHRSSY 813
+++R+A L ++ + N + ++
Sbjct: 176 RKEREAELGARAKEFTNVYIKNF 198
>sp|P11940|PABP1_HUMAN Polyadenylate-binding protein 1 (Poly(A)-binding protein 1) (PABP
1)
sp|P61286|PABP1_BOVIN Polyadenylate-binding protein 1 (Poly(A)-binding protein 1) (PABP
1)
Length = 636
Score = 327 bits (839), Expect = 2e-89
Identities = 175/277 (63%), Positives = 211/277 (76%), Gaps = 2/277 (0%)
Frame = +1
Query: 1 NILSCKIAADERSKSKGYGFVHFETEAAATNAIDAINGMLIKNKKVFVGRFIPRTSR-AN 177
NILSCK+ DE SKGYGFVHFET+ AA AI+ +NGML+ ++KVFVGRF R R A
Sbjct: 124 NILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAE 182
Query: 178 SDSDVK-FTNCYIKNFGEDLDDEKLREMFLEFGEITSAKVMIDENGKSKGFGFVCFKDSE 354
+ K FTN YIKNFGED+DDE+L+++F +FG S KVM DE+GKSKGFGFV F+ E
Sbjct: 183 LGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHE 242
Query: 355 TAESAVKALNGKMFKDRQLYVGRAQKKNERLDELRSHFEKQRAERSSRYTQGVNLYVKNL 534
A+ AV +NGK +Q+YVGRAQKK ER EL+ FE+ + +R +RY QGVNLYVKNL
Sbjct: 243 DAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRY-QGVNLYVKNL 301
Query: 535 DDSIDDSRLKQEFVVFGNITSAKVMTDSNNRSKGFGFVCFSNPEEATKAVTEMNGKICGS 714
DD IDD RL++EF FG ITSAKVM + RSKGFGFVCFS+PEEATKAVTEMNG+I +
Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 715 KPLYVALAQRKEDRKAHLASQYMQRVNPHRSSYPNQV 825
KPLYVALAQRKE+R+AHL +QYMQR+ R + PN V
Sbjct: 361 KPLYVALAQRKEERQAHLTNQYMQRMASVR-AVPNPV 396
Score = 177 bits (449), Expect = 4e-44
Identities = 106/262 (40%), Positives = 150/262 (57%), Gaps = 1/262 (0%)
Frame = +1
Query: 4 ILSCKIAADERSK-SKGYGFVHFETEAAATNAIDAINGMLIKNKKVFVGRFIPRTSRANS 180
ILS ++ D ++ S GY +V+F+ A A A+D +N +IK K V I + R S
Sbjct: 37 ILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVR----IMWSQRDPS 92
Query: 181 DSDVKFTNCYIKNFGEDLDDEKLREMFLEFGEITSAKVMIDENGKSKGFGFVCFKDSETA 360
N +IKN + +D++ L + F FG I S KV+ DENG SKG+GFV F+ E A
Sbjct: 93 LRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAA 151
Query: 361 ESAVKALNGKMFKDRQLYVGRAQKKNERLDELRSHFEKQRAERSSRYTQGVNLYVKNLDD 540
E A++ +NG + DR+++VGR + + ER AE +R + N+Y+KN +
Sbjct: 152 ERAIEKMNGMLLNDRKVFVGRFKSRKER-----------EAELGARAKEFTNVYIKNFGE 200
Query: 541 SIDDSRLKQEFVVFGNITSAKVMTDSNNRSKGFGFVCFSNPEEATKAVTEMNGKICGSKP 720
+DD RLK F FG S KVMTD + +SKGFGFV F E+A KAV EMNGK K
Sbjct: 201 DMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQ 260
Query: 721 LYVALAQRKEDRKAHLASQYMQ 786
+YV AQ+K +R+ L ++ Q
Sbjct: 261 IYVGRAQKKVERQTELKRKFEQ 282
Score = 90.9 bits (224), Expect = 5e-18
Identities = 59/203 (29%), Positives = 102/203 (50%), Gaps = 1/203 (0%)
Frame = +1
Query: 208 YIKNFGEDLDDEKLREMFLEFGEITSAKVMIDE-NGKSKGFGFVCFKDSETAESAVKALN 384
Y+ + D+ + L E F G I S +V D +S G+ +V F+ AE A+ +N
Sbjct: 14 YVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMN 73
Query: 385 GKMFKDRQLYVGRAQKKNERLDELRSHFEKQRAERSSRYTQGVNLYVKNLDDSIDDSRLK 564
+ K + + + +Q+ + S R + N+++KNLD SID+ L
Sbjct: 74 FDVIKGKPVRIMWSQR-----------------DPSLRKSGVGNIFIKNLDKSIDNKALY 116
Query: 565 QEFVVFGNITSAKVMTDSNNRSKGFGFVCFSNPEEATKAVTEMNGKICGSKPLYVALAQR 744
F FGNI S KV+ D N SKG+GFV F E A +A+ +MNG + + ++V +
Sbjct: 117 DTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 175
Query: 745 KEDRKAHLASQYMQRVNPHRSSY 813
+++R+A L ++ + N + ++
Sbjct: 176 RKEREAELGARAKEFTNVYIKNF 198
>sp|P29341|PABP1_MOUSE Polyadenylate-binding protein 1 (Poly(A)-binding protein 1) (PABP
1)
Length = 636
Score = 327 bits (838), Expect = 3e-89
Identities = 175/277 (63%), Positives = 211/277 (76%), Gaps = 2/277 (0%)
Frame = +1
Query: 1 NILSCKIAADERSKSKGYGFVHFETEAAATNAIDAINGMLIKNKKVFVGRFIPRTSR-AN 177
NILSCK+ DE SKGYGFVHFET+ AA AI+ +NGML+ ++KVFVGRF + R A
Sbjct: 124 NILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSQKEREAE 182
Query: 178 SDSDVK-FTNCYIKNFGEDLDDEKLREMFLEFGEITSAKVMIDENGKSKGFGFVCFKDSE 354
+ K FTN YIKNFGED+DDE+L+E+F +FG S KVM DE+GKSKGFGFV F+ E
Sbjct: 183 LGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHE 242
Query: 355 TAESAVKALNGKMFKDRQLYVGRAQKKNERLDELRSHFEKQRAERSSRYTQGVNLYVKNL 534
A+ AV +NGK +Q+YVGRAQKK ER EL+ FE+ + +R +RY QGVNLYVKNL
Sbjct: 243 DAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRY-QGVNLYVKNL 301
Query: 535 DDSIDDSRLKQEFVVFGNITSAKVMTDSNNRSKGFGFVCFSNPEEATKAVTEMNGKICGS 714
DD IDD RL++EF FG ITSAKVM + RSKGFGFVCFS+PEEATKAVTEMNG+I +
Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 715 KPLYVALAQRKEDRKAHLASQYMQRVNPHRSSYPNQV 825
KPLYVALAQRKE+R+AHL +QYMQR+ R + PN V
Sbjct: 361 KPLYVALAQRKEERQAHLTNQYMQRMASVR-AVPNPV 396
Score = 177 bits (450), Expect = 3e-44
Identities = 106/262 (40%), Positives = 151/262 (57%), Gaps = 1/262 (0%)
Frame = +1
Query: 4 ILSCKIAADERSK-SKGYGFVHFETEAAATNAIDAINGMLIKNKKVFVGRFIPRTSRANS 180
ILS ++ D ++ S GY +V+F+ A A A+D +N +IK K V I + R S
Sbjct: 37 ILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVR----IMWSQRDPS 92
Query: 181 DSDVKFTNCYIKNFGEDLDDEKLREMFLEFGEITSAKVMIDENGKSKGFGFVCFKDSETA 360
N +IKN + +D++ L + F FG I S KV+ DENG SKG+GFV F+ E A
Sbjct: 93 LRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAA 151
Query: 361 ESAVKALNGKMFKDRQLYVGRAQKKNERLDELRSHFEKQRAERSSRYTQGVNLYVKNLDD 540
E A++ +NG + DR+++VGR + + ER AE +R + N+Y+KN +
Sbjct: 152 ERAIEKMNGMLLNDRKVFVGRFKSQKER-----------EAELGARAKEFTNVYIKNFGE 200
Query: 541 SIDDSRLKQEFVVFGNITSAKVMTDSNNRSKGFGFVCFSNPEEATKAVTEMNGKICGSKP 720
+DD RLK+ F FG S KVMTD + +SKGFGFV F E+A KAV EMNGK K
Sbjct: 201 DMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQ 260
Query: 721 LYVALAQRKEDRKAHLASQYMQ 786
+YV AQ+K +R+ L ++ Q
Sbjct: 261 IYVGRAQKKVERQTELKRKFEQ 282
Score = 90.5 bits (223), Expect = 6e-18
Identities = 59/203 (29%), Positives = 102/203 (50%), Gaps = 1/203 (0%)
Frame = +1
Query: 208 YIKNFGEDLDDEKLREMFLEFGEITSAKVMIDE-NGKSKGFGFVCFKDSETAESAVKALN 384
Y+ + D+ + L E F G I S +V D +S G+ +V F+ AE A+ +N
Sbjct: 14 YVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMN 73
Query: 385 GKMFKDRQLYVGRAQKKNERLDELRSHFEKQRAERSSRYTQGVNLYVKNLDDSIDDSRLK 564
+ K + + + +Q+ + S R + N+++KNLD SID+ L
Sbjct: 74 FDVIKGKPVRIMWSQR-----------------DPSLRKSGVGNIFIKNLDKSIDNKALY 116
Query: 565 QEFVVFGNITSAKVMTDSNNRSKGFGFVCFSNPEEATKAVTEMNGKICGSKPLYVALAQR 744
F FGNI S KV+ D N SKG+GFV F E A +A+ +MNG + + ++V +
Sbjct: 117 DTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 175
Query: 745 KEDRKAHLASQYMQRVNPHRSSY 813
+++R+A L ++ + N + ++
Sbjct: 176 QKEREAELGARAKEFTNVYIKNF 198
>sp|Q13310|PABP4_HUMAN Polyadenylate-binding protein 4 (Poly(A)-binding protein 4) (PABP
4) (Inducible poly(A)-binding protein) (iPABP)
(Activated-platelet protein 1) (APP-1)
Length = 644
Score = 326 bits (835), Expect = 7e-89
Identities = 173/277 (62%), Positives = 211/277 (76%), Gaps = 2/277 (0%)
Frame = +1
Query: 1 NILSCKIAADERSKSKGYGFVHFETEAAATNAIDAINGMLIKNKKVFVGRFIPRTSR-AN 177
NILSCK+ DE SKGY FVHFET+ AA AI+ +NGML+ ++KVFVGRF R R A
Sbjct: 124 NILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAE 182
Query: 178 SDSDVK-FTNCYIKNFGEDLDDEKLREMFLEFGEITSAKVMIDENGKSKGFGFVCFKDSE 354
+ K FTN YIKNFGE++DDE L+E+F +FG+ S KVM D NGKSKGFGFV ++ E
Sbjct: 183 LGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHE 242
Query: 355 TAESAVKALNGKMFKDRQLYVGRAQKKNERLDELRSHFEKQRAERSSRYTQGVNLYVKNL 534
A AV+ +NGK + ++VGRAQKK ER EL+ FE+ + ER SRY QGVNLY+KNL
Sbjct: 243 DANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRY-QGVNLYIKNL 301
Query: 535 DDSIDDSRLKQEFVVFGNITSAKVMTDSNNRSKGFGFVCFSNPEEATKAVTEMNGKICGS 714
DD+IDD +L++EF FG+ITSAKVM + + RSKGFGFVCFS+PEEATKAVTEMNG+I GS
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 715 KPLYVALAQRKEDRKAHLASQYMQRVNPHRSSYPNQV 825
KPLYVALAQRKE+RKAHL +QYMQRV R+ N +
Sbjct: 361 KPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAI 397
Score = 171 bits (433), Expect = 3e-42
Identities = 101/271 (37%), Positives = 151/271 (55%), Gaps = 1/271 (0%)
Frame = +1
Query: 4 ILSCKIAADERSK-SKGYGFVHFETEAAATNAIDAINGMLIKNKKVFVGRFIPRTSRANS 180
+LS ++ D ++ S GY +V+F+ A A A+D +N +IK K + I + R S
Sbjct: 37 VLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPI----RIMWSQRDPS 92
Query: 181 DSDVKFTNCYIKNFGEDLDDEKLREMFLEFGEITSAKVMIDENGKSKGFGFVCFKDSETA 360
N +IKN + +D++ L + F FG I S KV+ DENG SKG+ FV F+ E A
Sbjct: 93 LRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAA 151
Query: 361 ESAVKALNGKMFKDRQLYVGRAQKKNERLDELRSHFEKQRAERSSRYTQGVNLYVKNLDD 540
+ A++ +NG + DR+++VGR + + ER AE ++ + N+Y+KN +
Sbjct: 152 DKAIEKMNGMLLNDRKVFVGRFKSRKER-----------EAELGAKAKEFTNVYIKNFGE 200
Query: 541 SIDDSRLKQEFVVFGNITSAKVMTDSNNRSKGFGFVCFSNPEEATKAVTEMNGKICGSKP 720
+DD LK+ F FG S KVM D N +SKGFGFV + E+A KAV EMNGK K
Sbjct: 201 EVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKI 260
Query: 721 LYVALAQRKEDRKAHLASQYMQRVNPHRSSY 813
++V AQ+K +R+A L ++ Q S Y
Sbjct: 261 IFVGRAQKKVERQAELKRKFEQLKQERISRY 291
Score = 92.0 bits (227), Expect = 2e-18
Identities = 60/215 (27%), Positives = 105/215 (48%), Gaps = 1/215 (0%)
Frame = +1
Query: 184 SDVKFTNCYIKNFGEDLDDEKLREMFLEFGEITSAKVMIDE-NGKSKGFGFVCFKDSETA 360
S + Y+ + D+ + L E F G + S +V D +S G+ +V F+ A
Sbjct: 6 SSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADA 65
Query: 361 ESAVKALNGKMFKDRQLYVGRAQKKNERLDELRSHFEKQRAERSSRYTQGVNLYVKNLDD 540
E A+ +N + K + + + +Q+ + S R + N+++KNLD
Sbjct: 66 ERALDTMNFDVIKGKPIRIMWSQR-----------------DPSLRKSGVGNVFIKNLDK 108
Query: 541 SIDDSRLKQEFVVFGNITSAKVMTDSNNRSKGFGFVCFSNPEEATKAVTEMNGKICGSKP 720
SID+ L F FGNI S KV+ D N SKG+ FV F E A KA+ +MNG + +
Sbjct: 109 SIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRK 167
Query: 721 LYVALAQRKEDRKAHLASQYMQRVNPHRSSYPNQV 825
++V + +++R+A L ++ + N + ++ +V
Sbjct: 168 VFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEV 202
>sp|P20965|PABP1_XENLA Polyadenylate-binding protein 1 (Poly(A)-binding protein 1) (PABP
1)
Length = 633
Score = 320 bits (821), Expect = 3e-87
Identities = 170/274 (62%), Positives = 206/274 (75%), Gaps = 2/274 (0%)
Frame = +1
Query: 1 NILSCKIAADERSKSKGYGFVHFETEAAATNAIDAINGMLIKNKKVFVGRFIPRTSR-AN 177
NILSCK+ DE SKGYGFVHFET+ AA AID +NGML+ ++KVFVGRF R R A
Sbjct: 124 NILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAE 182
Query: 178 SDSDVK-FTNCYIKNFGEDLDDEKLREMFLEFGEITSAKVMIDENGKSKGFGFVCFKDSE 354
+ K FTN YIKNFG+D++DE+L+EMF ++G S KVM D+NGKSKGFGFV F+ E
Sbjct: 183 LGARAKEFTNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDDNGKSKGFGFVSFERHE 242
Query: 355 TAESAVKALNGKMFKDRQLYVGRAQKKNERLDELRSHFEKQRAERSSRYTQGVNLYVKNL 534
A+ AV + GK + ++VGRAQKK ER EL+ FE+ +R +RY QGVNLYVKNL
Sbjct: 243 DAQKAVDEMYGKDMNGKSMFVGRAQKKVERQTELKRKFEQMNQDRITRY-QGVNLYVKNL 301
Query: 535 DDSIDDSRLKQEFVVFGNITSAKVMTDSNNRSKGFGFVCFSNPEEATKAVTEMNGKICGS 714
DD IDD RL++EF+ FG ITSAKVM + RSKGFGFVCFS+PEEATKAVTEMNG+I +
Sbjct: 302 DDGIDDERLRKEFLPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 715 KPLYVALAQRKEDRKAHLASQYMQRVNPHRSSYP 816
KPLYVALAQRKE+R+AHL +QYMQR+ R P
Sbjct: 361 KPLYVALAQRKEERQAHLTNQYMQRMASVRVPNP 394
Score = 172 bits (436), Expect = 1e-42
Identities = 103/262 (39%), Positives = 149/262 (56%), Gaps = 1/262 (0%)
Frame = +1
Query: 4 ILSCKIAADERSK-SKGYGFVHFETEAAATNAIDAINGMLIKNKKVFVGRFIPRTSRANS 180
ILS ++ D ++ S GY +V+F+ A A A+D +N +IK + V I + R S
Sbjct: 37 ILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGRPVR----IMWSQRDPS 92
Query: 181 DSDVKFTNCYIKNFGEDLDDEKLREMFLEFGEITSAKVMIDENGKSKGFGFVCFKDSETA 360
N +IKN + +D++ L + F FG I S KV+ DENG SKG+GFV F+ E A
Sbjct: 93 LRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAA 151
Query: 361 ESAVKALNGKMFKDRQLYVGRAQKKNERLDELRSHFEKQRAERSSRYTQGVNLYVKNLDD 540
E A+ +NG + DR+++VGR + + ER AE +R + N+Y+KN D
Sbjct: 152 ERAIDKMNGMLLNDRKVFVGRFKSRKER-----------EAELGARAKEFTNVYIKNFGD 200
Query: 541 SIDDSRLKQEFVVFGNITSAKVMTDSNNRSKGFGFVCFSNPEEATKAVTEMNGKICGSKP 720
++D RLK+ F +G S KVMTD N +SKGFGFV F E+A KAV EM GK K
Sbjct: 201 DMNDERLKEMFGKYGPALSVKVMTDDNGKSKGFGFVSFERHEDAQKAVDEMYGKDMNGKS 260
Query: 721 LYVALAQRKEDRKAHLASQYMQ 786
++V AQ+K +R+ L ++ Q
Sbjct: 261 MFVGRAQKKVERQTELKRKFEQ 282
Score = 93.6 bits (231), Expect = 7e-19
Identities = 60/208 (28%), Positives = 106/208 (50%), Gaps = 1/208 (0%)
Frame = +1
Query: 208 YIKNFGEDLDDEKLREMFLEFGEITSAKVMIDE-NGKSKGFGFVCFKDSETAESAVKALN 384
Y+ + +D+ + L E F G I S +V D +S G+ +V F+ AE A+ +N
Sbjct: 14 YVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMN 73
Query: 385 GKMFKDRQLYVGRAQKKNERLDELRSHFEKQRAERSSRYTQGVNLYVKNLDDSIDDSRLK 564
+ K R + + +Q+ + S R + N+++KNLD SID+ L
Sbjct: 74 FDVIKGRPVRIMWSQR-----------------DPSLRKSGVGNIFIKNLDKSIDNKALY 116
Query: 565 QEFVVFGNITSAKVMTDSNNRSKGFGFVCFSNPEEATKAVTEMNGKICGSKPLYVALAQR 744
F FGNI S KV+ D N SKG+GFV F E A +A+ +MNG + + ++V +
Sbjct: 117 DTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKS 175
Query: 745 KEDRKAHLASQYMQRVNPHRSSYPNQVS 828
+++R+A L ++ + N + ++ + ++
Sbjct: 176 RKEREAELGARAKEFTNVYIKNFGDDMN 203
>sp|Q9H361|PABP3_HUMAN Polyadenylate-binding protein 3 (Poly(A)-binding protein 3) (PABP
3) (Testis-specific poly(A)-binding protein)
Length = 631
Score = 310 bits (795), Expect = 3e-84
Identities = 168/276 (60%), Positives = 204/276 (73%), Gaps = 2/276 (0%)
Frame = +1
Query: 1 NILSCKIAADERSKSKGYGFVHFETEAAATNAIDAINGMLIKNKKVFVGRFIPRTSR-AN 177
NILSC + DE SKGYGFVHFET AA AI +NGML+ +KVFVG+F R R A
Sbjct: 124 NILSCNVVCDENG-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAE 182
Query: 178 SDSDVK-FTNCYIKNFGEDLDDEKLREMFLEFGEITSAKVMIDENGKSKGFGFVCFKDSE 354
+ K F N YIKNFGED+DDE+L+++F +FG S KVM DE+GKSKGFGFV F+ E
Sbjct: 183 LGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHE 242
Query: 355 TAESAVKALNGKMFKDRQLYVGRAQKKNERLDELRSHFEKQRAERSSRYTQGVNLYVKNL 534
A+ AV +NGK +Q+YVGRAQKK ER EL+ FE+ + +R +RY Q VNLYVKNL
Sbjct: 243 DAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRY-QVVNLYVKNL 301
Query: 535 DDSIDDSRLKQEFVVFGNITSAKVMTDSNNRSKGFGFVCFSNPEEATKAVTEMNGKICGS 714
DD IDD RL++ F FG ITSAKVM + RSKGFGFVCFS+PEEATKAVTEMNG+I +
Sbjct: 302 DDGIDDERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 715 KPLYVALAQRKEDRKAHLASQYMQRVNPHRSSYPNQ 822
KPLYVALAQRKE+R+A+L ++YMQR+ R + PNQ
Sbjct: 361 KPLYVALAQRKEERQAYLTNEYMQRMASVR-AVPNQ 395
Score = 162 bits (411), Expect = 1e-39
Identities = 101/262 (38%), Positives = 144/262 (54%), Gaps = 1/262 (0%)
Frame = +1
Query: 4 ILSCKIAADE-RSKSKGYGFVHFETEAAATNAIDAINGMLIKNKKVFVGRFIPRTSRANS 180
ILS +I D S S Y +V+F+ A +A+D +N +IK K V I + R S
Sbjct: 37 ILSIRICRDLITSGSSNYAYVNFQHTKDAEHALDTMNFDVIKGKPVR----IMWSQRDPS 92
Query: 181 DSDVKFTNCYIKNFGEDLDDEKLREMFLEFGEITSAKVMIDENGKSKGFGFVCFKDSETA 360
N ++KN + ++++ L + FG I S V+ DENG SKG+GFV F+ E A
Sbjct: 93 LRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENG-SKGYGFVHFETHEAA 151
Query: 361 ESAVKALNGKMFKDRQLYVGRAQKKNERLDELRSHFEKQRAERSSRYTQGVNLYVKNLDD 540
E A+K +NG + R+++VG+ + + ER AE +R + N+Y+KN +
Sbjct: 152 ERAIKKMNGMLLNGRKVFVGQFKSRKER-----------EAELGARAKEFPNVYIKNFGE 200
Query: 541 SIDDSRLKQEFVVFGNITSAKVMTDSNNRSKGFGFVCFSNPEEATKAVTEMNGKICGSKP 720
+DD RLK F FG S KVMTD + +SKGFGFV F E+A KAV EMNGK K
Sbjct: 201 DMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQ 260
Query: 721 LYVALAQRKEDRKAHLASQYMQ 786
+YV AQ+K +R+ L + Q
Sbjct: 261 IYVGRAQKKVERQTELKRTFEQ 282
Score = 81.6 bits (200), Expect = 3e-15
Identities = 55/203 (27%), Positives = 100/203 (49%), Gaps = 1/203 (0%)
Frame = +1
Query: 208 YIKNFGEDLDDEKLREMFLEFGEITSAKVMIDE-NGKSKGFGFVCFKDSETAESAVKALN 384
Y+ + D+ + L E F G I S ++ D S + +V F+ ++ AE A+ +N
Sbjct: 14 YVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALDTMN 73
Query: 385 GKMFKDRQLYVGRAQKKNERLDELRSHFEKQRAERSSRYTQGVNLYVKNLDDSIDDSRLK 564
+ K + + + +Q+ + S R + N++VKNLD SI++ L
Sbjct: 74 FDVIKGKPVRIMWSQR-----------------DPSLRKSGVGNIFVKNLDKSINNKALY 116
Query: 565 QEFVVFGNITSAKVMTDSNNRSKGFGFVCFSNPEEATKAVTEMNGKICGSKPLYVALAQR 744
FGNI S V+ D N SKG+GFV F E A +A+ +MNG + + ++V +
Sbjct: 117 DTVSAFGNILSCNVVCDENG-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKS 175
Query: 745 KEDRKAHLASQYMQRVNPHRSSY 813
+++R+A L ++ + N + ++
Sbjct: 176 RKEREAELGARAKEFPNVYIKNF 198
>sp|O64380|PABP3_ARATH Polyadenylate-binding protein 3 (Poly(A)-binding protein 3) (PABP
3)
Length = 660
Score = 284 bits (726), Expect = 3e-76
Identities = 144/263 (54%), Positives = 195/263 (74%), Gaps = 2/263 (0%)
Frame = +1
Query: 4 ILSCKIAADERSKSKGYGFVHFETEAAATNAIDAINGMLIKNKKVFVGRFIPRTSRANSD 183
ILSCK+A D +SKGYGFV FE E +A AID +NGML+ +K+VFVG FI R RA +
Sbjct: 162 ILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIRRQERARDE 221
Query: 184 SDV--KFTNCYIKNFGEDLDDEKLREMFLEFGEITSAKVMIDENGKSKGFGFVCFKDSET 357
+ +FTN Y+KN +++ +++LR+ F +FG I+SA VM D++G S+ FGFV F+ +E
Sbjct: 222 NTPTPRFTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEA 281
Query: 358 AESAVKALNGKMFKDRQLYVGRAQKKNERLDELRSHFEKQRAERSSRYTQGVNLYVKNLD 537
A SAV+ +NG D LYVGRAQKK+ER +ELR FE++R R + +QG NLY+KNLD
Sbjct: 282 AASAVEKMNGISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEK-SQGANLYLKNLD 340
Query: 538 DSIDDSRLKQEFVVFGNITSAKVMTDSNNRSKGFGFVCFSNPEEATKAVTEMNGKICGSK 717
DS+DD +LK+ F +GN+TS+KVM + S+GFGFV +SNPEEA +A++EMNGK+ G K
Sbjct: 341 DSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALRALSEMNGKMIGRK 400
Query: 718 PLYVALAQRKEDRKAHLASQYMQ 786
PLY+ALAQRKEDR+AHL + + Q
Sbjct: 401 PLYIALAQRKEDRRAHLQALFSQ 423
Score = 155 bits (392), Expect = 2e-37
Identities = 94/274 (34%), Positives = 148/274 (54%), Gaps = 4/274 (1%)
Frame = +1
Query: 1 NILSCKIAADERSKSKGYGFVHFETEAAATNAIDAINGMLIKNKKVFVGRFIPRTSRANS 180
N++S ++ D+ +S GY +++F A A++A+N + ++ + R +N
Sbjct: 74 NVVSVRVCRDQNRRSLGYAYINFSNPNDAYRAMEALNYTPLFDRPI-------RIMLSNR 126
Query: 181 DSDVKFT---NCYIKNFGEDLDDEKLREMFLEFGEITSAKVMIDENGKSKGFGFVCFKDS 351
D + + N +IKN +D++ L E F FG I S KV +D G+SKG+GFV F+
Sbjct: 127 DPSTRLSGKGNIFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKE 186
Query: 352 ETAESAVKALNGKMFKDRQLYVGRAQKKNERLDELRSHFEKQRAERSSRYTQGVNLYVKN 531
E+A++A+ LNG + D+Q++VG ++ ER + + R+T N+YVKN
Sbjct: 187 ESAQAAIDKLNGMLMNDKQVFVGHFIRRQER--------ARDENTPTPRFT---NVYVKN 235
Query: 532 LDDSIDDSRLKQEFVVFGNITSAKVMTDSNNRSKGFGFVCFSNPEEATKAVTEMNGKICG 711
L I + L++ F FG I+SA VM D + S+ FGFV F E A AV +MNG G
Sbjct: 236 LPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKMNGISLG 295
Query: 712 SKPLYVALAQRKEDRKAHLASQYMQ-RVNPHRSS 810
LYV AQ+K +R+ L ++ Q R+N S
Sbjct: 296 DDVLYVGRAQKKSEREEELRRKFEQERINRFEKS 329
Score = 117 bits (294), Expect = 4e-26
Identities = 62/172 (36%), Positives = 100/172 (58%), Gaps = 12/172 (6%)
Frame = +1
Query: 4 ILSCKIAADERSKSKGYGFVHFETEAAATNAIDAINGMLIKNKKVFVGRFIPRTSRA--- 174
I S + D+ S+ +GFV+FE AA +A++ +NG+ + + ++VGR ++ R
Sbjct: 255 ISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKMNGISLGDDVLYVGRAQKKSEREEEL 314
Query: 175 ---------NSDSDVKFTNCYIKNFGEDLDDEKLREMFLEFGEITSAKVMIDENGKSKGF 327
N + N Y+KN + +DDEKL+EMF E+G +TS+KVM++ G S+GF
Sbjct: 315 RRKFEQERINRFEKSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGF 374
Query: 328 GFVCFKDSETAESAVKALNGKMFKDRQLYVGRAQKKNERLDELRSHFEKQRA 483
GFV + + E A A+ +NGKM + LY+ AQ+K +R L++ F + RA
Sbjct: 375 GFVAYSNPEEALRALSEMNGKMIGRKPLYIALAQRKEDRRAHLQALFSQIRA 426
Score = 90.1 bits (222), Expect = 8e-18
Identities = 55/209 (26%), Positives = 100/209 (47%)
Frame = +1
Query: 199 TNCYIKNFGEDLDDEKLREMFLEFGEITSAKVMIDENGKSKGFGFVCFKDSETAESAVKA 378
++ Y + + + L ++F + S +V D+N +S G+ ++ F + A A++A
Sbjct: 49 SSLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNRRSLGYAYINFSNPNDAYRAMEA 108
Query: 379 LNGKMFKDRQLYVGRAQKKNERLDELRSHFEKQRAERSSRYTQGVNLYVKNLDDSIDDSR 558
LN DR + + + + + S+R + N+++KNLD SID+
Sbjct: 109 LNYTPLFDRPIRIMLSNR-----------------DPSTRLSGKGNIFIKNLDASIDNKA 151
Query: 559 LKQEFVVFGNITSAKVMTDSNNRSKGFGFVCFSNPEEATKAVTEMNGKICGSKPLYVALA 738
L + F FG I S KV D RSKG+GFV F E A A+ ++NG + K ++V
Sbjct: 152 LFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHF 211
Query: 739 QRKEDRKAHLASQYMQRVNPHRSSYPNQV 825
R+++R + + N + + P ++
Sbjct: 212 IRRQERARDENTPTPRFTNVYVKNLPKEI 240
Score = 35.8 bits (81), Expect = 0.18
Identities = 14/48 (29%), Positives = 27/48 (56%)
Frame = +1
Query: 1 NILSCKIAADERSKSKGYGFVHFETEAAATNAIDAINGMLIKNKKVFV 144
N+ S K+ + + S+G+GFV + A A+ +NG +I K +++
Sbjct: 357 NVTSSKVMLNPQGMSRGFGFVAYSNPEEALRALSEMNGKMIGRKPLYI 404
>sp|P31209|PABP_SCHPO Polyadenylate-binding protein (Poly(A)-binding protein) (PABP)
Length = 653
Score = 283 bits (725), Expect = 4e-76
Identities = 139/264 (52%), Positives = 190/264 (71%), Gaps = 2/264 (0%)
Frame = +1
Query: 4 ILSCKIAADERSKSKGYGFVHFETEAAATNAIDAINGMLIKNKKVFVGRFIPRTSRANSD 183
ILSCK+A DE +KGYGFVHF++ +A AI+ +NGML+ +KKV+VG + R R +
Sbjct: 194 ILSCKVAVDELGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYVGHHVSRRERQSKV 253
Query: 184 SDVK--FTNCYIKNFGEDLDDEKLREMFLEFGEITSAKVMIDENGKSKGFGFVCFKDSET 357
+K FTN YIKN ++ +++ ++F +FGEITS ++ D+N K +GFGFV + + E
Sbjct: 254 EALKANFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHEC 313
Query: 358 AESAVKALNGKMFKDRQLYVGRAQKKNERLDELRSHFEKQRAERSSRYTQGVNLYVKNLD 537
A+ AV LN K +K ++LYVGRAQKK+ER +ELR +E+ + E+ ++Y QGVNL++KNL
Sbjct: 314 AQKAVDELNDKEYKGKKLYVGRAQKKHEREEELRKRYEQMKLEKMNKY-QGVNLFIKNLQ 372
Query: 538 DSIDDSRLKQEFVVFGNITSAKVMTDSNNRSKGFGFVCFSNPEEATKAVTEMNGKICGSK 717
D +DD RLK EF FG ITSAK+MTD +SKGFGFVC++ PEEA KAVTEMN ++ K
Sbjct: 373 DEVDDERLKAEFSAFGTITSAKIMTDEQGKSKGFGFVCYTTPEEANKAVTEMNQRMLAGK 432
Query: 718 PLYVALAQRKEDRKAHLASQYMQR 789
PLYVALAQRKE R++ L +Q R
Sbjct: 433 PLYVALAQRKEVRRSQLEAQIQAR 456
Score = 150 bits (380), Expect = 4e-36
Identities = 93/265 (35%), Positives = 141/265 (53%), Gaps = 3/265 (1%)
Frame = +1
Query: 1 NILSCKIAADERSKSKGYGFVHFETEAAATNAIDAINGMLIKNKKVFVGRFIPRTSRANS 180
+I C+ A RS GY +V+F A+D +N LIK + I + R S
Sbjct: 108 SIRVCRDAVTRRSL--GYAYVNFHNMEDGEKALDELNYTLIKGRPCR----IMWSQRDPS 161
Query: 181 DSDVKFTNCYIKNFGEDLDDEKLREMFLEFGEITSAKVMIDENGKSKGFGFVCFKDSETA 360
+ N +IKN +D++ L + F FG+I S KV +DE G +KG+GFV F E+A
Sbjct: 162 LRKMGTGNVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDELGNAKGYGFVHFDSVESA 221
Query: 361 ESAVKALNGKMFKDRQLYVGRAQKKNER---LDELRSHFEKQRAERSSRYTQGVNLYVKN 531
+A++ +NG + D+++YVG + ER ++ L+++F N+Y+KN
Sbjct: 222 NAAIEHVNGMLLNDKKVYVGHHVSRRERQSKVEALKANF--------------TNVYIKN 267
Query: 532 LDDSIDDSRLKQEFVVFGNITSAKVMTDSNNRSKGFGFVCFSNPEEATKAVTEMNGKICG 711
LD I + F FG ITS ++ D N++ +GFGFV ++N E A KAV E+N K
Sbjct: 268 LDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDELNDKEYK 327
Query: 712 SKPLYVALAQRKEDRKAHLASQYMQ 786
K LYV AQ+K +R+ L +Y Q
Sbjct: 328 GKKLYVGRAQKKHEREEELRKRYEQ 352
Score = 117 bits (293), Expect = 5e-26
Identities = 63/174 (36%), Positives = 92/174 (52%), Gaps = 12/174 (6%)
Frame = +1
Query: 4 ILSCKIAADERSKSKGYGFVHFETEAAATNAIDAINGMLIKNKKVFVGRFIPRTSRANS- 180
I S + D+ K +G+GFV++ A A+D +N K KK++VGR + R
Sbjct: 287 ITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDELNDKEYKGKKLYVGRAQKKHEREEEL 346
Query: 181 -----------DSDVKFTNCYIKNFGEDLDDEKLREMFLEFGEITSAKVMIDENGKSKGF 327
+ + N +IKN +++DDE+L+ F FG ITSAK+M DE GKSKGF
Sbjct: 347 RKRYEQMKLEKMNKYQGVNLFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQGKSKGF 406
Query: 328 GFVCFKDSETAESAVKALNGKMFKDRQLYVGRAQKKNERLDELRSHFEKQRAER 489
GFVC+ E A AV +N +M + LYV AQ+K R +L + + + R
Sbjct: 407 GFVCYTTPEEANKAVTEMNQRMLAGKPLYVALAQRKEVRRSQLEAQIQARNQFR 460
>sp|P04147|PABP_YEAST Polyadenylate-binding protein, cytoplasmic and nuclear
(Poly(A)-binding protein) (PABP) (ARS consensus binding
protein ACBP-67) (Polyadenylate tail-binding protein)
Length = 577
Score = 280 bits (716), Expect = 4e-75
Identities = 142/265 (53%), Positives = 185/265 (69%), Gaps = 2/265 (0%)
Frame = +1
Query: 1 NILSCKIAADERSKSKGYGFVHFETEAAATNAIDAINGMLIKNKKVFVGRFIPRTSRANS 180
+ILS KIA DE KSKG+GFVHFE E AA AIDA+NGML+ ++++V + R R +
Sbjct: 151 DILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAPHLSRKERDSQ 210
Query: 181 DSDVK--FTNCYIKNFGEDLDDEKLREMFLEFGEITSAKVMIDENGKSKGFGFVCFKDSE 354
+ K +TN Y+KN + DE+ +E+F +FG I SA + D +GK KGFGFV ++ E
Sbjct: 211 LEETKAHYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHE 270
Query: 355 TAESAVKALNGKMFKDRQLYVGRAQKKNERLDELRSHFEKQRAERSSRYTQGVNLYVKNL 534
A AV+ALN +LYVGRAQKKNER+ L+ +E R E+ ++Y QGVNL+VKNL
Sbjct: 271 DAVKAVEALNDSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKY-QGVNLFVKNL 329
Query: 535 DDSIDDSRLKQEFVVFGNITSAKVMTDSNNRSKGFGFVCFSNPEEATKAVTEMNGKICGS 714
DDS+DD +L++EF +G ITSAKVM N +SKGFGFVCFS PEEATKA+TE N +I
Sbjct: 330 DDSVDDEKLEEEFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAG 389
Query: 715 KPLYVALAQRKEDRKAHLASQYMQR 789
KPLYVA+AQRK+ R++ LA Q R
Sbjct: 390 KPLYVAIAQRKDVRRSQLAQQIQAR 414
Score = 151 bits (382), Expect = 2e-36
Identities = 92/263 (34%), Positives = 140/263 (53%), Gaps = 3/263 (1%)
Frame = +1
Query: 1 NILSCKIAADERSK-SKGYGFVHFETEAAATNAIDAINGMLIKNK--KVFVGRFIPRTSR 171
++ S ++ D +K S GY +V+F A AI+ +N IK + ++ + P +
Sbjct: 63 SVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAIEQLNYTPIKGRLCRIMWSQRDPSLRK 122
Query: 172 ANSDSDVKFTNCYIKNFGEDLDDEKLREMFLEFGEITSAKVMIDENGKSKGFGFVCFKDS 351
S N +IKN D+D++ L + F FG+I S+K+ DENGKSKGFGFV F++
Sbjct: 123 KGSG------NIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEE 176
Query: 352 ETAESAVKALNGKMFKDRQLYVGRAQKKNERLDELRSHFEKQRAERSSRYTQGVNLYVKN 531
A+ A+ ALNG + +++YV + ER + Q E + YT NLYVKN
Sbjct: 177 GAAKEAIDALNGMLLNGQEIYVAPHLSRKER--------DSQLEETKAHYT---NLYVKN 225
Query: 532 LDDSIDDSRLKQEFVVFGNITSAKVMTDSNNRSKGFGFVCFSNPEEATKAVTEMNGKICG 711
++ D + ++ F FG I SA + D++ + KGFGFV + E+A KAV +N
Sbjct: 226 INSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALNDSELN 285
Query: 712 SKPLYVALAQRKEDRKAHLASQY 780
+ LYV AQ+K +R L QY
Sbjct: 286 GEKLYVGRAQKKNERMHVLKKQY 308
Score = 115 bits (289), Expect = 1e-25
Identities = 67/180 (37%), Positives = 96/180 (53%), Gaps = 12/180 (6%)
Frame = +1
Query: 4 ILSCKIAADERSKSKGYGFVHFETEAAATNAIDAINGMLIKNKKVFVGRFIPRTSRANS- 180
I+S + D K KG+GFV++E A A++A+N + +K++VGR + R +
Sbjct: 245 IVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQKKNERMHVL 304
Query: 181 ---------DSDVKF--TNCYIKNFGEDLDDEKLREMFLEFGEITSAKVMIDENGKSKGF 327
+ K+ N ++KN + +DDEKL E F +G ITSAKVM ENGKSKGF
Sbjct: 305 KKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTENGKSKGF 364
Query: 328 GFVCFKDSETAESAVKALNGKMFKDRQLYVGRAQKKNERLDELRSHFEKQRAERSSRYTQ 507
GFVCF E A A+ N ++ + LYV AQ+K+ R +L + A RY Q
Sbjct: 365 GFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKDVRRSQLAQQIQ---ARNQMRYQQ 421
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.317 0.131 0.373
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 102,453,071
Number of Sequences: 369166
Number of extensions: 1959019
Number of successful extensions: 7529
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7002
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9750928390
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)